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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3j7q:1 (3.4) BS01 rna N/A GO:0015031 ... N/A 24930395
    2 3j7q:A (3.4) BS01 rna N/A GO:0003723 ... N/A 24930395
    3 3j7q:B (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    4 3j7q:C (3.4) BS01 rna ? GO:0003735 ... F1SJJ5 24930395
    5 3j7q:C (3.4) BS02 rna ? GO:0003735 ... F1SJJ5 24930395
    6 3j7q:D (3.4) BS01 rna ? GO:0003735 ... A0A287ASD0 24930395
    7 3j7q:D (3.4) BS02 rna ? GO:0003735 ... A0A287ASD0 24930395
    8 3j7q:E (3.4) BS01 rna ? GO:0003735 ... Q2YGT9 24930395
    9 3j7q:F (3.4) BS01 rna N/A GO:0000463 ... N/A 24930395
    10 3j7q:F (3.4) BS02 rna N/A GO:0000463 ... N/A 24930395
    11 3j7q:G (3.4) BS01 rna ? GO:0042254 ... A0A4X1W808 24930395
    12 3j7q:G (3.4) BS02 rna ? GO:0042254 ... A0A4X1W808 24930395
    13 3j7q:H (3.4) BS01 rna ? GO:0003735 ... I3LP78 24930395
    14 3j7q:I (3.4) BS01 rna ? GO:0000027 ... Q29195 24930395
    15 3j7q:I (3.4) BS02 rna ? GO:0000027 ... Q29195 24930395
    16 3j7q:J (3.4) BS01 rna ? GO:0003723 ... Q29205 24930395
    17 3j7q:J (3.4) BS02 rna ? GO:0003723 ... Q29205 24930395
    18 3j7q:L (3.4) BS01 rna ? GO:0003735 ... A0A4X1TBV3 24930395
    19 3j7q:L (3.4) BS02 rna ? GO:0003735 ... A0A4X1TBV3 24930395
    20 3j7q:M (3.4) BS01 rna ? GO:0003723 ... A1XQU3 24930395
    21 3j7q:N (3.4) BS01 rna ? GO:0002181 ... A0A286ZL65 24930395
    22 3j7q:N (3.4) BS02 rna ? GO:0002181 ... A0A286ZL65 24930395
    23 3j7q:O (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    24 3j7q:P (3.4) BS01 rna ? GO:0003735 ... A0A287B386 24930395
    25 3j7q:P (3.4) BS02 rna ? GO:0003735 ... A0A287B386 24930395
    26 3j7q:Q (3.4) BS01 rna ? GO:0003735 ... A0A4X1W0N5 24930395
    27 3j7q:R (3.4) BS01 rna N/A GO:0003723 ... N/A 24930395
    28 3j7q:S (3.4) BS01 rna ? GO:0003735 ... A0A287APR1 24930395
    29 3j7q:S (3.4) BS02 rna ? GO:0003735 ... A0A287APR1 24930395
    30 3j7q:T (3.4) BS01 rna ? GO:0003735 ... P49666 24930395
    31 3j7q:T (3.4) BS02 rna ? GO:0003735 ... P49666 24930395
    32 3j7q:U (3.4) BS01 rna ? GO:0002181 ... P67985 24930395
    33 3j7q:V (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    34 3j7q:W (3.4) BS01 rna ? GO:0005737 ... A0A4X1SH42 24930395
    35 3j7q:X (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    36 3j7q:X (3.4) BS02 rna N/A GO:0003735 ... N/A 24930395
    37 3j7q:Y (3.4) BS01 rna ? GO:0003723 ... A0A4X1V977 24930395
    38 3j7q:Y (3.4) BS02 rna ? GO:0003723 ... A0A4X1V977 24930395
    39 3j7q:Z (3.4) BS01 rna ? GO:0003735 ... A1XQU5 24930395
    40 3j7q:a (3.4) BS01 rna ? GO:0003735 ... A0A4X1SN08 24930395
    41 3j7q:b (3.4) BS01 rna ? GO:0002181 ... Q95281 24930395
    42 3j7q:c (3.4) BS01 rna ? GO:0003723 ... A0A4X1TXJ8 24930395
    43 3j7q:d (3.4) BS01 rna ? GO:0002181 ... P62901 24930395
    44 3j7q:e (3.4) BS01 rna ? GO:0002181 ... Q6QAT0 24930395
    45 3j7q:f (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    46 3j7q:g (3.4) BS01 rna ? GO:0003735 ... Q29223 24930395
    47 3j7q:h (3.4) BS01 rna ? GO:0000463 ... Q29361 24930395
    48 3j7q:h (3.4) BS02 rna ? GO:0000463 ... Q29361 24930395
    49 3j7q:i (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    50 3j7q:j (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    51 3j7q:j (3.4) BS02 rna N/A GO:0003735 ... N/A 24930395
    52 3j7q:j (3.4) BS03 ZN N/A GO:0003735 ... N/A 24930395
    53 3j7q:k (3.4) BS01 rna ? GO:0003735 ... A0A4X1VLH7 24930395
    54 3j7q:l (3.4) BS01 rna ? GO:0002181 ... K7GP63 24930395
    55 3j7q:l (3.4) BS02 rna ? GO:0002181 ... K7GP63 24930395
    56 3j7q:m (3.4) BS01 rna ? GO:0003735 ... P63053 24930395
    57 3j7q:m (3.4) BS02 ZN ? GO:0003735 ... P63053 24930395
    58 3j7q:o (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    59 3j7q:o (3.4) BS02 ZN N/A GO:0003735 ... N/A 24930395
    60 3j7q:p (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    61 3j7q:r (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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