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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3j3w:0 (10.7) BS01 rna ? GO:0003735 ... O34687 23700310
    2 3j3w:2 (10.7) BS01 rna ? GO:0003735 ... P05647 23700310
    3 3j3w:5 (10.7) BS01 rna ? GO:0000049 ... Q06797 23700310
    4 3j3w:6 (10.7) BS01 rna ? GO:0003735 ... Q06796 23700310
    5 3j3w:C (10.7) BS01 rna ? GO:0002181 ... P42919 23700310
    6 3j3w:D (10.7) BS01 rna ? GO:0003735 ... P42920 23700310
    7 3j3w:E (10.7) BS01 rna ? GO:0003735 ... P42921 23700310
    8 3j3w:G (10.7) BS01 rna ? GO:0002181 ... P46898 23700310
    9 3j3w:J (10.7) BS01 rna ? GO:0003729 ... P70974 23700310
    10 3j3w:K (10.7) BS01 rna ? GO:0003735 ... P12875 23700310
    11 3j3w:L (10.7) BS01 rna ? GO:0003735 ... P19946 23700310
    12 3j3w:N (10.7) BS01 rna ? GO:0003735 ... P20277 23700310
    13 3j3w:P (10.7) BS01 rna ? GO:0003735 ... O31742 23700310
    14 3j3w:Q (10.7) BS01 rna ? GO:0000027 ... P55873 23700310
    15 3j3w:R (10.7) BS01 rna ? GO:0003723 ... P26908 23700310
    16 3j3w:S (10.7) BS01 rna ? GO:0003735 ... P42060 23700310
    17 3j3w:T (10.7) BS01 rna ? GO:0000027 ... P42924 23700310
    18 3j3w:U (10.7) BS01 rna ? GO:0003677 ... P0CI78 23700310
    19 3j3w:X (10.7) BS01 rna ? GO:0003735 ... P12873 23700310
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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