Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3hqp:A (2.3) BS01 MG 2.7.1.40 GO:0000287 ... Q27686 20123988
    2 3hqp:A (2.3) BS02 OXL 2.7.1.40 GO:0000287 ... Q27686 20123988
    3 3hqp:A (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    4 3hqp:A (2.3) BS04 ATP 2.7.1.40 GO:0000287 ... Q27686 20123988
    5 3hqp:B (2.3) BS01 MG 2.7.1.40 GO:0000287 ... Q27686 20123988
    6 3hqp:B (2.3) BS02 OXL 2.7.1.40 GO:0000287 ... Q27686 20123988
    7 3hqp:B (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    8 3hqp:B (2.3) BS04 ATP 2.7.1.40 GO:0000287 ... Q27686 20123988
    9 3hqp:C (2.3) BS01 MG 2.7.1.40 GO:0000287 ... Q27686 20123988
    10 3hqp:C (2.3) BS02 OXL 2.7.1.40 GO:0000287 ... Q27686 20123988
    11 3hqp:C (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    12 3hqp:C (2.3) BS04 ATP 2.7.1.40 GO:0000287 ... Q27686 20123988
    13 3hqp:D (2.3) BS01 MG 2.7.1.40 GO:0000287 ... Q27686 20123988
    14 3hqp:D (2.3) BS02 OXL 2.7.1.40 GO:0000287 ... Q27686 20123988
    15 3hqp:D (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    16 3hqp:D (2.3) BS04 ATP 2.7.1.40 GO:0000287 ... Q27686 20123988
    17 3hqp:E (2.3) BS01 MG 2.7.1.40 GO:0000287 ... Q27686 20123988
    18 3hqp:E (2.3) BS02 OXL 2.7.1.40 GO:0000287 ... Q27686 20123988
    19 3hqp:E (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    20 3hqp:E (2.3) BS04 ATP 2.7.1.40 GO:0000287 ... Q27686 20123988
    21 3hqp:F (2.3) BS01 MG 2.7.1.40 GO:0000287 ... Q27686 20123988
    22 3hqp:F (2.3) BS02 OXL 2.7.1.40 GO:0000287 ... Q27686 20123988
    23 3hqp:F (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    24 3hqp:F (2.3) BS04 ATP 2.7.1.40 GO:0000287 ... Q27686 20123988
    25 3hqp:G (2.3) BS01 MG 2.7.1.40 GO:0000287 ... Q27686 20123988
    26 3hqp:G (2.3) BS02 OXL 2.7.1.40 GO:0000287 ... Q27686 20123988
    27 3hqp:G (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    28 3hqp:G (2.3) BS04 ATP 2.7.1.40 GO:0000287 ... Q27686 20123988
    29 3hqp:H (2.3) BS01 MG 2.7.1.40 GO:0000287 ... Q27686 20123988
    30 3hqp:H (2.3) BS02 OXL 2.7.1.40 GO:0000287 ... Q27686 20123988
    31 3hqp:H (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    32 3hqp:H (2.3) BS04 ATP 2.7.1.40 GO:0000287 ... Q27686 20123988
    33 3hqp:I (2.3) BS01 MG 2.7.1.40 GO:0000287 ... Q27686 20123988
    34 3hqp:I (2.3) BS02 OXL 2.7.1.40 GO:0000287 ... Q27686 20123988
    35 3hqp:I (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    36 3hqp:I (2.3) BS04 ATP 2.7.1.40 GO:0000287 ... Q27686 20123988
    37 3hqp:J (2.3) BS01 MG 2.7.1.40 GO:0000287 ... Q27686 20123988
    38 3hqp:J (2.3) BS02 OXL 2.7.1.40 GO:0000287 ... Q27686 20123988
    39 3hqp:J (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    40 3hqp:J (2.3) BS04 ATP 2.7.1.40 GO:0000287 ... Q27686 20123988
    41 3hqp:K (2.3) BS01 MG 2.7.1.40 GO:0000287 ... Q27686 20123988
    42 3hqp:K (2.3) BS02 OXL 2.7.1.40 GO:0000287 ... Q27686 20123988
    43 3hqp:K (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    44 3hqp:K (2.3) BS04 ATP 2.7.1.40 GO:0000287 ... Q27686 20123988
    45 3hqp:L (2.3) BS01 MG 2.7.1.40 GO:0000287 ... Q27686 20123988
    46 3hqp:L (2.3) BS02 OXL 2.7.1.40 GO:0000287 ... Q27686 20123988
    47 3hqp:L (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    48 3hqp:L (2.3) BS04 ATP 2.7.1.40 GO:0000287 ... Q27686 20123988
    49 3hqp:M (2.3) BS01 MG 2.7.1.40 GO:0000287 ... Q27686 20123988
    50 3hqp:M (2.3) BS02 OXL 2.7.1.40 GO:0000287 ... Q27686 20123988
    51 3hqp:M (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    52 3hqp:M (2.3) BS04 ATP 2.7.1.40 GO:0000287 ... Q27686 20123988
    53 3hqp:N (2.3) BS01 MG 2.7.1.40 GO:0000287 ... Q27686 20123988
    54 3hqp:N (2.3) BS02 OXL 2.7.1.40 GO:0000287 ... Q27686 20123988
    55 3hqp:N (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    56 3hqp:N (2.3) BS04 ATP 2.7.1.40 GO:0000287 ... Q27686 20123988
    57 3hqp:O (2.3) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    58 3hqp:P (2.3) BS01 MG 2.7.1.40 GO:0000287 ... Q27686 20123988
    59 3hqp:P (2.3) BS02 OXL 2.7.1.40 GO:0000287 ... Q27686 20123988
    60 3hqp:P (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    61 3hqp:P (2.3) BS04 ATP 2.7.1.40 GO:0000287 ... Q27686 20123988
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218