Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2dys:A (2.2) BS01 CU 7.1.1.9 GO:0004129 ... P00396 17332748
    2 2dys:A (2.2) BS02 MG 7.1.1.9 GO:0004129 ... P00396 17332748
    3 2dys:A (2.2) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 17332748
    4 2dys:A (2.2) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17332748
    5 2dys:A (2.2) BS05 PGV 7.1.1.9 GO:0004129 ... P00396 17332748
    6 2dys:A (2.2) BS06 PGV 7.1.1.9 GO:0004129 ... P00396 17332748
    7 2dys:A (2.2) BS07 PSC 7.1.1.9 GO:0004129 ... P00396 17332748
    8 2dys:A (2.2) BS08 DCW 7.1.1.9 GO:0004129 ... P00396 17332748
    9 2dys:A (2.2) BS09 CDL 7.1.1.9 GO:0004129 ... P00396 17332748
    10 2dys:B (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17332748
    11 2dys:B (2.2) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 17332748
    12 2dys:B (2.2) BS03 PSC 7.1.1.9 GO:0004129 ... P68530 17332748
    13 2dys:B (2.2) BS04 CDL 7.1.1.9 GO:0004129 ... P68530 17332748
    14 2dys:C (2.2) BS01 PGV 7.1.1.9 GO:0004129 ... P00415 17332748
    15 2dys:C (2.2) BS02 DCW 7.1.1.9 GO:0004129 ... P00415 17332748
    16 2dys:C (2.2) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 17332748
    17 2dys:C (2.2) BS04 PEK 7.1.1.9 GO:0004129 ... P00415 17332748
    18 2dys:C (2.2) BS05 PEK 7.1.1.9 GO:0004129 ... P00415 17332748
    19 2dys:C (2.2) BS06 PGV 7.1.1.9 GO:0004129 ... P00415 17332748
    20 2dys:C (2.2) BS07 PGV 7.1.1.9 GO:0004129 ... P00415 17332748
    21 2dys:C (2.2) BS08 CDL 7.1.1.9 GO:0004129 ... P00415 17332748
    22 2dys:C (2.2) BS09 CDL 7.1.1.9 GO:0004129 ... P00415 17332748
    23 2dys:C (2.2) BS10 PEK 7.1.1.9 GO:0004129 ... P00415 17332748
    24 2dys:D (2.2) BS01 PGV 1.9.3.1 GO:0006123 ... P00423 17332748
    25 2dys:E (2.2) BS01 PSC 1.9.3.1 GO:0005743 ... P00426 17332748
    26 2dys:F (2.2) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 17332748
    27 2dys:G (2.2) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 17332748
    28 2dys:G (2.2) BS02 PEK 1.9.3.1 GO:0005743 ... P07471 17332748
    29 2dys:G (2.2) BS03 PEK 1.9.3.1 GO:0005743 ... P07471 17332748
    30 2dys:G (2.2) BS04 CDL 1.9.3.1 GO:0005743 ... P07471 17332748
    31 2dys:G (2.2) BS05 PEK 1.9.3.1 GO:0005743 ... P07471 17332748
    32 2dys:I (2.2) BS01 PSC 1.9.3.1 GO:0005739 ... P04038 17332748
    33 2dys:M (2.2) BS01 PGV 1.9.3.1 GO:0006123 ... P10175 17332748
    34 2dys:M (2.2) BS02 DMU 1.9.3.1 GO:0006123 ... P10175 17332748
    35 2dys:N (2.2) BS01 CDL 7.1.1.9 GO:0004129 ... P00396 17332748
    36 2dys:N (2.2) BS02 CU 7.1.1.9 GO:0004129 ... P00396 17332748
    37 2dys:N (2.2) BS03 MG 7.1.1.9 GO:0004129 ... P00396 17332748
    38 2dys:N (2.2) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 17332748
    39 2dys:N (2.2) BS05 HEA 7.1.1.9 GO:0004129 ... P00396 17332748
    40 2dys:N (2.2) BS06 PGV 7.1.1.9 GO:0004129 ... P00396 17332748
    41 2dys:N (2.2) BS07 PGV 7.1.1.9 GO:0004129 ... P00396 17332748
    42 2dys:N (2.2) BS08 PSC 7.1.1.9 GO:0004129 ... P00396 17332748
    43 2dys:N (2.2) BS09 DCW 7.1.1.9 GO:0004129 ... P00396 17332748
    44 2dys:N (2.2) BS10 PEK 7.1.1.9 GO:0004129 ... P00396 17332748
    45 2dys:O (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 17332748
    46 2dys:O (2.2) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 17332748
    47 2dys:O (2.2) BS03 PSC 7.1.1.9 GO:0004129 ... P68530 17332748
    48 2dys:P (2.2) BS01 PEK 7.1.1.9 GO:0004129 ... P00415 17332748
    49 2dys:P (2.2) BS02 PGV 7.1.1.9 GO:0004129 ... P00415 17332748
    50 2dys:P (2.2) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 17332748
    51 2dys:P (2.2) BS04 DCW 7.1.1.9 GO:0004129 ... P00415 17332748
    52 2dys:P (2.2) BS05 PEK 7.1.1.9 GO:0004129 ... P00415 17332748
    53 2dys:P (2.2) BS06 PEK 7.1.1.9 GO:0004129 ... P00415 17332748
    54 2dys:P (2.2) BS07 PGV 7.1.1.9 GO:0004129 ... P00415 17332748
    55 2dys:P (2.2) BS08 PGV 7.1.1.9 GO:0004129 ... P00415 17332748
    56 2dys:P (2.2) BS09 CDL 7.1.1.9 GO:0004129 ... P00415 17332748
    57 2dys:P (2.2) BS10 CDL 7.1.1.9 GO:0004129 ... P00415 17332748
    58 2dys:R (2.2) BS01 PSC 1.9.3.1 GO:0005743 ... P00426 17332748
    59 2dys:S (2.2) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 17332748
    60 2dys:T (2.2) BS01 DMU 1.9.3.1 GO:0005743 ... P07471 17332748
    61 2dys:T (2.2) BS02 PEK 1.9.3.1 GO:0005743 ... P07471 17332748
    62 2dys:T (2.2) BS03 PEK 1.9.3.1 GO:0005743 ... P07471 17332748
    63 2dys:T (2.2) BS04 PEK 1.9.3.1 GO:0005743 ... P07471 17332748
    64 2dys:T (2.2) BS05 CDL 1.9.3.1 GO:0005743 ... P07471 17332748
    65 2dys:Z (2.2) BS01 PGV 1.9.3.1 GO:0006123 ... P10175 17332748
    66 2dys:Z (2.2) BS02 DMU 1.9.3.1 GO:0006123 ... P10175 17332748
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218