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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1vq6:1 (2.7) BS01 rna ? GO:0003723 ... P32410 16306996
    2 1vq6:2 (2.7) BS01 rna ? GO:0003735 ... P22452 16306996
    3 1vq6:3 (2.7) BS01 rna ? GO:0000049 ... P32411 16306996
    4 1vq6:3 (2.7) BS02 MG ? GO:0000049 ... P32411 16306996
    5 1vq6:A (2.7) BS01 rna ? GO:0002181 ... P20276 16306996
    6 1vq6:A (2.7) BS02 MG ? GO:0002181 ... P20276 16306996
    7 1vq6:B (2.7) BS01 rna ? GO:0003723 ... P20279 16306996
    8 1vq6:C (2.7) BS01 rna ? GO:0003723 ... P12735 16306996
    9 1vq6:D (2.7) BS01 rna ? GO:0000049 ... P14124 16306996
    10 1vq6:D (2.7) BS02 rna ? GO:0000049 ... P14124 16306996
    11 1vq6:E (2.7) BS01 rna ? GO:0002181 ... P14135 16306996
    12 1vq6:F (2.7) BS01 rna ? GO:0001682 ... P12743 16306996
    13 1vq6:H (2.7) BS01 rna ? GO:0000027 ... P60617 16306996
    14 1vq6:I (2.7) BS01 rna ? GO:0003735 ... P14122 16306996
    15 1vq6:J (2.7) BS01 rna ? GO:0003729 ... P29198 16306996
    16 1vq6:K (2.7) BS01 rna ? GO:0003735 ... P22450 16306996
    17 1vq6:L (2.7) BS01 rna ? GO:0003735 ... P12737 16306996
    18 1vq6:M (2.7) BS01 rna ? GO:0002181 ... P60618 16306996
    19 1vq6:N (2.7) BS01 rna ? GO:0000027 ... P14123 16306996
    20 1vq6:N (2.7) BS02 rna ? GO:0000027 ... P14123 16306996
    21 1vq6:O (2.7) BS01 rna ? GO:0003723 ... P12733 16306996
    22 1vq6:P (2.7) BS01 rna ? GO:0003723 ... P14119 16306996
    23 1vq6:Q (2.7) BS01 rna ? GO:0003735 ... P12734 16306996
    24 1vq6:Q (2.7) BS02 rna ? GO:0003735 ... P12734 16306996
    25 1vq6:R (2.7) BS01 rna ? GO:0002181 ... P10970 16306996
    26 1vq6:S (2.7) BS01 rna ? GO:0000027 ... P12732 16306996
    27 1vq6:T (2.7) BS01 rna ? GO:0002181 ... P10972 16306996
    28 1vq6:T (2.7) BS02 MG ? GO:0002181 ... P10972 16306996
    29 1vq6:U (2.7) BS01 rna ? GO:0003735 ... P14116 16306996
    30 1vq6:V (2.7) BS01 rna ? GO:0003735 ... P10971 16306996
    31 1vq6:W (2.7) BS01 rna ? GO:0000463 ... P14121 16306996
    32 1vq6:W (2.7) BS02 rna ? GO:0000463 ... P14121 16306996
    33 1vq6:X (2.7) BS01 rna ? GO:0002181 ... P18138 16306996
    34 1vq6:Y (2.7) BS01 rna ? GO:0000166 ... P12736 16306996
    35 1vq6:Y (2.7) BS02 MG ? GO:0000166 ... P12736 16306996
    36 1vq6:Z (2.7) BS01 rna ? GO:0003735 ... P60619 16306996
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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