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BioLiP
Download all results in tab-seperated text for 41 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1rvv:1 (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    2 1rvv:2 (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    3 1rvv:2 (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    4 1rvv:3 (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    5 1rvv:4 (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    6 1rvv:4 (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    7 1rvv:A (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    8 1rvv:B (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    9 1rvv:C (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    10 1rvv:D (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    11 1rvv:D (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    12 1rvv:E (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    13 1rvv:E (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    14 1rvv:F (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    15 1rvv:F (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    16 1rvv:G (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    17 1rvv:G (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    18 1rvv:H (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    19 1rvv:I (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    20 1rvv:J (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    21 1rvv:K (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    22 1rvv:K (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    23 1rvv:L (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    24 1rvv:M (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    25 1rvv:M (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    26 1rvv:N (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    27 1rvv:O (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    28 1rvv:O (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    29 1rvv:P (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    30 1rvv:Q (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    31 1rvv:R (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    32 1rvv:S (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    33 1rvv:S (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    34 1rvv:T (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    35 1rvv:U (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    36 1rvv:V (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    37 1rvv:V (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    38 1rvv:W (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    39 1rvv:X (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    40 1rvv:Y (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    41 1rvv:Z (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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