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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 160800 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    2901 1zho:A
    (2.6)    		 BS02 >1zho:H (identical to 1zho:B, 1zho:D, 1zho:F)
    gggagugaaggaggcuucggccgcgaaacuucacuccc
<<<<<<<<<<..<<<....>>>......>>>>>>>>>>
    		 ? GO:0000049 ... P27150 16330048 PDBbind: Kd=16.5nM
    2902 1zho:C
    (2.6)    		 BS01 >1zho:B (identical to 1zho:D, 1zho:F, 1zho:H)
    gggagugaaggaggcuucggccgcgaaacuucacuccc
<<<<<<<<<<..<<<....>>>......>>>>>>>>>>
    		 ? GO:0000049 ... P27150 16330048 PDBbind: Kd=16.5nM
    2903 1zho:C
    (2.6)    		 BS02 >1zho:D (identical to 1zho:B, 1zho:F, 1zho:H)
    gggagugaaggaggcuucggccgcgaaacuucacuccc
<<<<<<<<<<..<<<....>>>......>>>>>>>>>>
    		 ? GO:0000049 ... P27150 16330048 PDBbind: Kd=16.5nM
    2904 1zho:E
    (2.6)    		 BS01 >1zho:F (identical to 1zho:B, 1zho:D, 1zho:H)
    gggagugaaggaggcuucggccgcgaaacuucacuccc
<<<<<<<<<<..<<<<..>>>>......>>>>>>>>>>
    		 ? GO:0000049 ... P27150 16330048 PDBbind: Kd=16.5nM
    2905 1zho:G
    (2.6)    		 BS01 >1zho:H (identical to 1zho:B, 1zho:D, 1zho:F)
    gggagugaaggaggcuucggccgcgaaacuucacuccc
<<<<<<<<<<..<<<....>>>......>>>>>>>>>>
    		 ? GO:0000049 ... P27150 16330048 PDBbind: Kd=16.5nM
    2906 1zjw:A
    (2.5)    		 BS01 >1zjw:B (identical to 1gtr:B, 1gts:B, 1o0b:B, 1o0c:B, 1qrs:B, 1qrt:B, 1qru:B, 1qtq:B, 2rd2:B, 2re8:B, 4v7m:CW)
    gggguaucgccaagcgguaaggcaccggauucugauuccggcauuccgag
guucgaauccucguaccccagcca
<<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<<
<.......>>>>>>>>>>>.....
    		 6.1.1.18 GO:0000166 ... P00962 15845536
    2907 1zl3:A
    (2.8)    		 BS01 >1zl3:B (identical to 1k8w:B)
    ggcaacgguucgaucccguugc
.<<<<<<<.......>>>>>>>
    		 5.4.99.25 GO:0000049 ... P60340 15987897
    2908 1zn0:A
    (15.5)    		 BS01 >1zn0:C
    gucacaccaugggaguggguauucaugacuggggugaagu
<<..<<<<.<<<..<<<<<<>>>>>>..>>>.>>>>>..>
    		 ? GO:0002184 ... P0A805 15949441
    2909 1zse:A
    (3.0)    		 BS01 >1zse:R (identical to 2bs1:R)
    ugucuaagacag
<<<<...>>>>.
    		 ? GO:0003723 ... P03612 16531233
    2910 1zse:B
    (3.0)    		 BS01 >1zse:R (identical to 2bs1:R)
    ugucuaagacag
<<<<...>>>>.
    		 ? GO:0003723 ... P03612 16531233
    2911 1zzn:A
    (3.37)    		 BS01 >1zzn:B (identical to 3bo2:B, 3bo3:B, 3bo4:B, 3iin:B, 1u6b:B)
    ggccgugugccuugcgccgggaaaccacgcaagggauggugucaaauucg
gcgaaaccuaagcgcccgcccgggcguauggcaacgccgagccaagcuuc
gcagccauugcacuccggcugcgaugaagguguagagacuagacggcacc
caccuaaggcaaacgcuauggugaaggcauaguccagggaguggcga
.........<<<<<<<..<<....>>.>>>>>>>...<<<<<<....<<<
<<<...<<...<<<<<<....>>>>>>..>>...>>>>>><<<.....<<
<<<<<<..........>>>>>>>>....>>>.....(((((...>>>>>>
<<<<...<<<....>>>..>>>>......))))).............
    		 ? GO:0003676 ... P09012 16141079
    2912 2a1r:A
    (2.6)    		 BS01 >2a1r:C (identical to 2a1r:D, 9ash:P, 6hyu:D, 8kbc:N, 8kbc:O, 8kbc:P, 8kbc:Q, 8kbf:C, 8kbf:D, 8kbh:J, 8kbh:K, 8kbh:L, 6m6v:E, 6m6v:F, 6m6v:G, 6o78:E, 6o79:C, 4oau:A, 8oiv:D, 6ov0:F, 6ov0:G, 6p7p:D, 6p7p:E, 6p7p:F, 8pe3:D, 8pe3:F, 6q1h:D, 6q1h:H, 7qqk:E, 7qqk:F, 7qqk:G, 7qqk:H, 7soq:B, 7sor:B, 7sor:D, 7sot:B, 7sou:B, 8tl0:E, 8tl0:F, 8tl0:G, 8tl0:H, 8tl0:J, 8tl0:M, 8tl0:N, 4tu0:F, 4tu0:G, 5udj:B, 6vm6:G, 6vm6:H, 6vm6:I, 6vm6:J, 6vm6:K, 6wan:G, 6wan:H, 6wan:I, 6wan:J, 6wan:K, 6wan:L, 6ywo:E, 6ywo:I, 6ywo:F, 6ywo:K, 7zgv:D)
    aaa
...
    		 3.1.13.4 GO:0003676 ... O95453 16281054
    2913 2a1r:B
    (2.6)    		 BS01 >2a1r:D (identical to 2a1r:C, 9ash:P, 6hyu:D, 8kbc:N, 8kbc:O, 8kbc:P, 8kbc:Q, 8kbf:C, 8kbf:D, 8kbh:J, 8kbh:K, 8kbh:L, 6m6v:E, 6m6v:F, 6m6v:G, 6o78:E, 6o79:C, 4oau:A, 8oiv:D, 6ov0:F, 6ov0:G, 6p7p:D, 6p7p:E, 6p7p:F, 8pe3:D, 8pe3:F, 6q1h:D, 6q1h:H, 7qqk:E, 7qqk:F, 7qqk:G, 7qqk:H, 7soq:B, 7sor:B, 7sor:D, 7sot:B, 7sou:B, 8tl0:E, 8tl0:F, 8tl0:G, 8tl0:H, 8tl0:J, 8tl0:M, 8tl0:N, 4tu0:F, 4tu0:G, 5udj:B, 6vm6:G, 6vm6:H, 6vm6:I, 6vm6:J, 6vm6:K, 6wan:G, 6wan:H, 6wan:I, 6wan:J, 6wan:K, 6wan:L, 6ywo:E, 6ywo:I, 6ywo:F, 6ywo:K, 7zgv:D)
    aaa
...
    		 3.1.13.4 GO:0003676 ... O95453 16281054
    2914 2a8v:A
    (2.4)    		 BS01 >2a8v:D (identical to 6fqr:C, 4x9e:G, 4x9e:H, 2xpj:D)
    ccc
...
    		 3.6.4.- GO:0003676 ... P0AG30 10230401
    2915 2a8v:B
    (2.4)    		 BS01 >2a8v:E (identical to 4uft:R)
    cccccc
......
    		 3.6.4.- GO:0003676 ... P0AG30 10230401
    2916 2ab4:A
    (2.4)    		 BS01 >2ab4:B
    ccacgguucgaauccguggc
<<<<<<.......>>>>>>.
    		 5.4.99.25 GO:0001522 ... Q9WZW0 16300397
    2917 2ad9:A
    (-1.00)    		 BS01 >2ad9:B (identical to 2adb:B, 2adc:B, 2adc:C)
    cucucu
......
    		 ? GO:0003676 ... P26599 16179478
    2918 2adb:A
    (-1.00)    		 BS01 >2adb:B (identical to 2ad9:B, 2adc:B, 2adc:C)
    cucucu
......
    		 ? GO:0003676 ... P26599 16179478
    2919 2adc:A
    (-1.00)    		 BS01 >2adc:B (identical to 2ad9:B, 2adb:B, 2adc:C)
    cucucu
......
    		 ? GO:0003676 ... P26599 16179478
    2920 2adc:A
    (-1.00)    		 BS02 >2adc:C (identical to 2ad9:B, 2adb:B, 2adc:B)
    cucucu
......
    		 ? GO:0003676 ... P26599 16179478
    2921 2ake:A
    (3.1)    		 BS01 >2ake:B (identical to 2azx:C, 2azx:D)
    gaccucguggcgcaaugguagcgcgucugacuccagaucagaagguugcg
uguucgaaucacgucgggguca
<<<<<<<..<<<.........>>>.<<<<<.......>>>>>.....<<<
<<.......>>>>>>>>>>>>.
    		 6.1.1.2 GO:0000166 ... P23381 16798914
    2922 2ann:A
    (2.3)    		 BS01 >2ann:B
    cgcggaucagucacccaagcgcg
<<<...............>>>..
    		 ? GO:0003676 ... P51513 21742260
    2923 2anr:A
    (1.94)    		 BS01 >2anr:B
    cucgcggaucagucacccaagcgag
<<<<<...............>>>>>
    		 ? GO:0003676 ... P51513 21742260
    2924 2asb:A
    (1.5)    		 BS01 >2asb:B
    gaacucaauag
...........
    		 ? GO:0003676 ... P9WIV3 16193062
    2925 2atw:A
    (2.25)    		 BS01 >2atw:B (identical to 2atw:D)
    agaacucaauag
............
    		 ? GO:0003676 ... P9WIV3 16193062
    2926 2atw:C
    (2.25)    		 BS01 >2atw:D (identical to 2atw:B)
    agaacucaauag
............
    		 ? GO:0003676 ... P9WIV3 16193062
    2927 2az0:A
    (2.6)    		 BS01 >2az0:C (identical to 2az0:D, 2az2:C, 2az2:D)
    gcauggacgcguccaugc
..................
    		 ? N/A P68831 16228003 PDBbind: Kd=1.4nM
    2928 2az0:A
    (2.6)    		 BS02 >2az0:D (identical to 2az0:C, 2az2:C, 2az2:D)
    gcauggacgcguccaugc
..................
    		 ? N/A P68831 16228003 PDBbind: Kd=1.4nM
    2929 2az0:B
    (2.6)    		 BS01 >2az0:C (identical to 2az0:D, 2az2:C, 2az2:D)
    gcauggacgcguccaugc
..................
    		 ? N/A P68831 16228003 PDBbind: Kd=1.4nM
    2930 2az0:B
    (2.6)    		 BS02 >2az0:D (identical to 2az0:C, 2az2:C, 2az2:D)
    gcauggacgcguccaugc
..................
    		 ? N/A P68831 16228003 PDBbind: Kd=1.4nM
    2931 2az2:A
    (2.6)    		 BS01 >2az2:C (identical to 2az0:C, 2az0:D, 2az2:D)
    gcauggacgcguccaugc
..................
    		 ? N/A P68831 16228003 PDBbind: Kd=1.4nM
    2932 2az2:A
    (2.6)    		 BS02 >2az2:D (identical to 2az0:C, 2az0:D, 2az2:C)
    gcauggacgcguccaugc
..................
    		 ? N/A P68831 16228003 PDBbind: Kd=1.4nM
    2933 2az2:B
    (2.6)    		 BS01 >2az2:C (identical to 2az0:C, 2az0:D, 2az2:D)
    gcauggacgcguccaugc
..................
    		 ? N/A P68831 16228003 PDBbind: Kd=1.4nM
    2934 2az2:B
    (2.6)    		 BS02 >2az2:D (identical to 2az0:C, 2az0:D, 2az2:C)
    gcauggacgcguccaugc
..................
    		 ? N/A P68831 16228003 PDBbind: Kd=1.4nM
    2935 2azx:A
    (2.8)    		 BS01 >2azx:C (identical to 2ake:B, 2azx:D)
    gaccucguggcgcaaugguagcgcgucugacuccagaucagaagguugcg
uguucgaaucacgucgggguca
<<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<
<<.......>>>>>>>>>>>>.
    		 6.1.1.2 GO:0000166 ... P23381 16724112
    2936 2azx:B
    (2.8)    		 BS01 >2azx:D (identical to 2ake:B, 2azx:C)
    gaccucguggcgcaaugguagcgcgucugacuccagaucagaagguugcg
uguucgaaucacgucgggguca
<.<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<
<<.......>>>>>>>>>>.>.
    		 6.1.1.2 GO:0000166 ... P23381 16724112
    2937 2b2d:A
    (2.9)    		 BS01 >2b2d:R (identical to 2bs0:S)
    gucuaagac
<<<...>>>
    		 ? GO:0003723 ... P03612 16531233
    2938 2b2d:B
    (2.9)    		 BS01 >2b2d:R (identical to 2bs0:S)
    gucuaagac
<<<...>>>
    		 ? GO:0003723 ... P03612 16531233
    2939 2b2d:C
    (2.9)    		 BS01 >2b2d:S (identical to 8kbd:N, 8kbd:O, 8kbd:P, 8kbd:Q, 6m7k:B)
    aag
...
    		 ? GO:0003723 ... P03612 16531233
    2940 2b2e:A
    (3.15)    		 BS01 >2b2e:R (identical to 1aq3:R, 1aq4:R, 2b2g:R, 1zdi:R)
    augaggauuacccaug
<<<.<<....>>>>>.
    		 ? GO:0003723 ... P03612 16531233
    2941 2b2e:B
    (3.15)    		 BS01 >2b2e:R (identical to 1aq3:R, 1aq4:R, 2b2g:R, 1zdi:R)
    augaggauuacccaug
<<<.<<....>>>>>.
    		 ? GO:0003723 ... P03612 16531233
    2942 2b2e:C
    (3.15)    		 BS01 >2b2e:S
    ugaggauuacccau
<<.<<....>>>>.
    		 ? GO:0003723 ... P03612 16531233
    2943 2b2g:A
    (3.02)    		 BS01 >2b2g:R (identical to 1aq3:R, 1aq4:R, 2b2e:R, 1zdi:R)
    augaggauuacccaug
<<<.<<....>>>>>.
    		 ? GO:0003723 ... P03612 16531233
    2944 2b2g:B
    (3.02)    		 BS01 >2b2g:R (identical to 1aq3:R, 1aq4:R, 2b2e:R, 1zdi:R)
    augaggauuacccaug
<<<.<<....>>>>>.
    		 ? GO:0003723 ... P03612 16531233
    2945 2b2g:C
    (3.02)    		 BS01 >2b2g:S (identical to 2bny:R, 2iz9:R, 2iz9:S)
    augaggauuacccau
<<<.<<....>>>>>
    		 ? GO:0003723 ... P03612 16531233
    2946 2b3j:A
    (2.0)    		 BS01 >2b3j:E (identical to 2b3j:F)
    uugacuacggaucaa
<<<<.......>>>>
    		 3.5.4.33 GO:0002100 ... Q99W51 16415880
    2947 2b3j:A
    (2.0)    		 BS02 >2b3j:F (identical to 2b3j:E)
    uugacuacggaucaa
<<<<.......>>>>
    		 3.5.4.33 GO:0002100 ... Q99W51 16415880
    2948 2b3j:B
    (2.0)    		 BS01 >2b3j:E (identical to 2b3j:F)
    uugacuacggaucaa
<<<<.......>>>>
    		 3.5.4.33 GO:0002100 ... Q99W51 16415880
    2949 2b3j:B
    (2.0)    		 BS02 >2b3j:F (identical to 2b3j:E)
    uugacuacggaucaa
<<<<.......>>>>
    		 3.5.4.33 GO:0002100 ... Q99W51 16415880
    2950 2b3j:C
    (2.0)    		 BS01 >2b3j:G
    gacuacgg
........
    		 3.5.4.33 GO:0002100 ... Q99W51 16415880
    2951 2b3j:C
    (2.0)    		 BS02 >2b3j:H
    uuugacuacggaucaa
.<<<<.......>>>>
    		 3.5.4.33 GO:0002100 ... Q99W51 16415880
    2952 2b3j:D
    (2.0)    		 BS01 >2b3j:H
    uuugacuacggaucaa
.<<<<.......>>>>
    		 3.5.4.33 GO:0002100 ... Q99W51 16415880
    2953 2b63:A
    (3.8)    		 BS01 >2b63:R
    cagcacugauugcggucgagguagcuugaug
..<<<.....>>>.<<<<<<....>>>>>>.
    		 2.7.7.6 GO:0000428 ... P04050 16341226 PDBbind: Kd=33nM
    2954 2b63:B
    (3.8)    		 BS01 >2b63:R
    cagcacugauugcggucgagguagcuugaug
..<<<.....>>>.<<<<<<....>>>>>>.
    		 2.7.7.6 GO:0000428 ... P08518 16341226 PDBbind: Kd=33nM
    2955 2b6g:A
    (-1.00)    		 BS01 >2b6g:B
    ggaggcucuggcagcuuuc
<<<<<<<.....>>>>>>>
    		 ? GO:0003729 ... Q08831 16429155 PDBbind: Kd=30nM
    2956 2bbv:C
    (2.8)    		 BS01 >2bbv:N
    ucuuauaucu
..........
    		 3.4.23.44 GO:0004190 ... P04329 8289282
    2957 2bgg:A
    (2.2)    		 BS01 >2bgg:P (identical to 2bgg:R)
    uucgacgc
........
    		 ? GO:0003676 ... O28951 15800628
    2958 2bgg:A
    (2.2)    		 BS02 >2bgg:Q
    gucgaauu
........
    		 ? GO:0003676 ... O28951 15800628
    2959 2bgg:B
    (2.2)    		 BS01 >2bgg:R (identical to 2bgg:P)
    uucgacgc
........
    		 ? GO:0003676 ... O28951 15800628
    2960 2bh2:A
    (2.15)    		 BS01 >2bh2:C (identical to 2bh2:D)
    agcgaaauuccuugucggguaaguuccgac
.............<<<<<<.....>>>>>>
    		 2.1.1.190 GO:0003723 ... P55135 15766524
    2961 2bh2:B
    (2.15)    		 BS01 >2bh2:D (identical to 2bh2:C)
    agcgaaauuccuugucggguaaguuccgac
.............<<<<<<.....>>>>>>
    		 2.1.1.190 GO:0003723 ... P55135 15766524
    2962 2bny:A
    (3.0)    		 BS01 >2bny:R (identical to 2b2g:S, 2iz9:R, 2iz9:S)
    augaggauuacccau
<<<.<<....>>>>>
    		 ? GO:0003723 ... P03612 16531233
    2963 2bny:B
    (3.0)    		 BS01 >2bny:R (identical to 2b2g:S, 2iz9:R, 2iz9:S)
    augaggauuacccau
<<<.<<....>>>>>
    		 ? GO:0003723 ... P03612 16531233
    2964 2bny:C
    (3.0)    		 BS01 >2bny:S (identical to 2c4y:S, 2c4z:S, 1zdi:S)
    ugaggauuaccca
<<.<<....>>>>
    		 ? GO:0003723 ... P03612 16531233
    2965 2bq5:A
    (2.91)    		 BS01 >2bq5:R
    acaugaggauuacccaugu
<<<<<.<<....>>>>>>>
    		 ? GO:0003723 ... P03612 16531233
    2966 2bq5:B
    (2.91)    		 BS01 >2bq5:R
    acaugaggauuacccaugu
<<<<<.<<....>>>>>>>
    		 ? GO:0003723 ... P03612 16531233
    2967 2bq5:C
    (2.91)    		 BS01 >2bq5:S (identical to 2bu1:R, 2bu1:S, 2c4q:R, 2c4q:S, 2c4y:R, 2c4z:R)
    caugaggauuacccaug
<<<<.<<....>>>>>>
    		 ? GO:0003723 ... P03612 16531233
    2968 2bs0:A
    (2.45)    		 BS01 >2bs0:R
    ugucuaagacug
.<<<...>>>..
    		 ? GO:0003723 ... P03612 16531233
    2969 2bs0:B
    (2.45)    		 BS01 >2bs0:R
    ugucuaagacug
.<<<...>>>..
    		 ? GO:0003723 ... P03612 16531233
    2970 2bs0:C
    (2.45)    		 BS01 >2bs0:S (identical to 2b2d:R)
    gucuaagac
<<<...>>>
    		 ? GO:0003723 ... P03612 16531233
    2971 2bs1:A
    (2.8)    		 BS01 >2bs1:R (identical to 1zse:R)
    ugucuaagacag
<<<<...>>>>.
    		 ? GO:0003723 ... P03612 16531233
    2972 2bs1:B
    (2.8)    		 BS01 >2bs1:R (identical to 1zse:R)
    ugucuaagacag
<<<<...>>>>.
    		 ? GO:0003723 ... P03612 16531233
    2973 2bs1:C
    (2.8)    		 BS01 >2bs1:S
    ugucuaagaca
<<<<...>>>>
    		 ? GO:0003723 ... P03612 16531233
    2974 2bte:A
    (2.9)    		 BS01 >2bte:B (identical to 2bte:E, 2byt:B, 2byt:E)
    gccgggguggcggaauggguagacgcgcaugacaucaugugcgcaagcgu
gcggguucaagucccgcccccggcacca
<<<<<<<..<<<...........>>><<<<<<..>>>>>><<....>>..
<<<<<.......>>>>>>>>>>>>....
    		 6.1.1.4 GO:0000166 ... Q7SIE4 16155583
    2975 2bte:D
    (2.9)    		 BS01 >2bte:E (identical to 2bte:B, 2byt:B, 2byt:E)
    gccgggguggcggaauggguagacgcgcaugacaucaugugcgcaagcgu
gcggguucaagucccgcccccggcacca
<<<<<<<..<<<...........>>><<<<<<..>>>>>><<....>>..
<<<<<.......>>>>>>>>>>>>....
    		 6.1.1.4 GO:0000166 ... Q7SIE4 16155583
    2976 2bu1:A
    (2.2)    		 BS01 >2bu1:R (identical to 2bq5:S, 2bu1:S, 2c4q:R, 2c4q:S, 2c4y:R, 2c4z:R)
    caugaggauuacccaug
<<<<.<<....>>>>>>
    		 ? GO:0003723 ... P03612 11720290 PDBbind: Kd=18nM
    2977 2bu1:B
    (2.2)    		 BS01 >2bu1:R (identical to 2bq5:S, 2bu1:S, 2c4q:R, 2c4q:S, 2c4y:R, 2c4z:R)
    caugaggauuacccaug
<<<<.<<....>>>>>>
    		 ? GO:0003723 ... P03612 11720290 PDBbind: Kd=18nM
    2978 2bu1:C
    (2.2)    		 BS01 >2bu1:S (identical to 2bq5:S, 2bu1:R, 2c4q:R, 2c4q:S, 2c4y:R, 2c4z:R)
    caugaggauuacccaug
<<<<.<<....>>>>>>
    		 ? GO:0003723 ... P03612 11720290 PDBbind: Kd=18nM
    2979 2bx2:L
    (2.85)    		 BS01 >2bx2:R
    uuuacaguauuugu
..............
    		 3.1.26.12 GO:0003676 ... P21513 16237448
    2980 2byt:A
    (3.3)    		 BS01 >2byt:B (identical to 2bte:B, 2bte:E, 2byt:E)
    gccgggguggcggaauggguagacgcgcaugacaucaugugcgcaagcgu
gcggguucaagucccgcccccggcacca
<<<<<<<..<<<...........>>><<<<<<..>>>>>><<....>>..
<<<<<.......>>>>>>>>>>>>....
    		 6.1.1.4 GO:0000166 ... Q7SIE4 16155583
    2981 2byt:D
    (3.3)    		 BS01 >2byt:E (identical to 2bte:B, 2bte:E, 2byt:B)
    gccgggguggcggaauggguagacgcgcaugacaucaugugcgcaagcgu
gcggguucaagucccgcccccggcacca
<<<<<<<..<<<...........>>><<<<<<..>>>>>><<....>>..
<<<<<.......>>>>>>>>>>>>....
    		 6.1.1.4 GO:0000166 ... Q7SIE4 16155583
    2982 2c06:A
    (-1.00)    		 BS01 >2c06:C
    auaca
.....
    		 3.1.-.- GO:0003677 ... P13976 16413033
    2983 2c06:B
    (-1.00)    		 BS01 >2c06:C
    auaca
.....
    		 3.1.-.- GO:0003677 ... P13976 16413033
    2984 2c0b:L
    (3.18)    		 BS01 >2c0b:R
    uuuacaguauu
...........
    		 3.1.26.12 GO:0003676 ... P21513 16237448
    2985 2c4q:A
    (2.38)    		 BS01 >2c4q:R (identical to 2bq5:S, 2bu1:R, 2bu1:S, 2c4q:S, 2c4y:R, 2c4z:R)
    caugaggauuacccaug
<<<<.<<....>>>>>>
    		 ? GO:0003723 ... P03612 11720290 PDBbind: Kd=1.2nM
    2986 2c4q:B
    (2.38)    		 BS01 >2c4q:R (identical to 2bq5:S, 2bu1:R, 2bu1:S, 2c4q:S, 2c4y:R, 2c4z:R)
    caugaggauuacccaug
<<<<.<<....>>>>>>
    		 ? GO:0003723 ... P03612 11720290 PDBbind: Kd=1.2nM
    2987 2c4q:C
    (2.38)    		 BS01 >2c4q:S (identical to 2bq5:S, 2bu1:R, 2bu1:S, 2c4q:R, 2c4y:R, 2c4z:R)
    caugaggauuacccaug
<<<<.<<....>>>>>>
    		 ? GO:0003723 ... P03612 11720290 PDBbind: Kd=1.2nM
    2988 2c4r:L
    (3.6)    		 BS01 >2c4r:R
    acaguauuug
..........
    		 3.1.26.12 GO:0003676 ... P21513 16237448
    2989 2c4y:A
    (2.68)    		 BS01 >2c4y:R (identical to 2bq5:S, 2bu1:R, 2bu1:S, 2c4q:R, 2c4q:S, 2c4z:R)
    caugaggauuacccaug
<<<<.<<....>>>>>>
    		 ? GO:0003723 ... P03612 11720290 PDBbind: Kd=0.6nM
    2990 2c4y:B
    (2.68)    		 BS01 >2c4y:R (identical to 2bq5:S, 2bu1:R, 2bu1:S, 2c4q:R, 2c4q:S, 2c4z:R)
    caugaggauuacccaug
<<<<.<<....>>>>>>
    		 ? GO:0003723 ... P03612 11720290 PDBbind: Kd=0.6nM
    2991 2c4y:C
    (2.68)    		 BS01 >2c4y:S (identical to 2bny:S, 2c4z:S, 1zdi:S)
    ugaggauuaccca
<<.<<....>>>>
    		 ? GO:0003723 ... P03612 11720290 PDBbind: Kd=0.6nM
    2992 2c4z:A
    (2.6)    		 BS01 >2c4z:R (identical to 2bq5:S, 2bu1:R, 2bu1:S, 2c4q:R, 2c4q:S, 2c4y:R)
    caugaggauuacccaug
<<<<.<<....>>>>>>
    		 ? GO:0003723 ... P03612 11720290
    2993 2c4z:B
    (2.6)    		 BS01 >2c4z:R (identical to 2bq5:S, 2bu1:R, 2bu1:S, 2c4q:R, 2c4q:S, 2c4y:R)
    caugaggauuacccaug
<<<<.<<....>>>>>>
    		 ? GO:0003723 ... P03612 11720290
    2994 2c4z:C
    (2.6)    		 BS01 >2c4z:S (identical to 2bny:S, 2c4y:S, 1zdi:S)
    ugaggauuaccca
<<.<<....>>>>
    		 ? GO:0003723 ... P03612 11720290
    2995 2c50:A
    (2.65)    		 BS01 >2c50:R
    augaggauaaccca
.<<.<<....>>>>
    		 ? GO:0003723 ... P03612 11720290 PDBbind: Kd=0.06nM
    2996 2c50:B
    (2.65)    		 BS01 >2c50:R
    augaggauaaccca
.<<.<<....>>>>
    		 ? GO:0003723 ... P03612 11720290 PDBbind: Kd=0.06nM
    2997 2c50:C
    (2.65)    		 BS01 >2c50:S
    ugaggauaaccca
<<.<<....>>>>
    		 ? GO:0003723 ... P03612 11720290 PDBbind: Kd=0.06nM
    2998 2c51:A
    (2.8)    		 BS01 >2c51:R
    augaggaugacccau
<<<.<<....>>>>>
    		 ? GO:0003723 ... P03612 11720290
    2999 2c51:B
    (2.8)    		 BS01 >2c51:R
    augaggaugacccau
<<<.<<....>>>>>
    		 ? GO:0003723 ... P03612 11720290
    3000 2c51:C
    (2.8)    		 BS01 >2c51:S
    ugaggaugaccca
<<.<<....>>>>
    		 ? GO:0003723 ... P03612 11720290
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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