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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 160800 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    159101 8z8j:A
    (3.16)    		 BS01 >8z8j:D (identical to 8z8n:D)
    agagaaaucaa
.<<....>>..
    		 ? GO:0042025 ... P27194 38816392
    159102 8z8j:A
    (3.16)    		 BS02 >8z8j:E (identical to 8z8n:E, 8z9r:E)
    ugcu
....
    		 ? GO:0042025 ... P27194 38816392
    159103 8z8j:B
    (3.16)    		 BS01 >8z8j:D (identical to 8z8n:D)
    agagaaaucaa
.<<....>>..
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159104 8z8j:B
    (3.16)    		 BS02 >8z8j:E (identical to 8z8n:E, 8z9r:E)
    ugcu
....
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159105 8z8n:A
    (2.79)    		 BS01 >8z8n:D (identical to 8z8j:D)
    agagaaaucaa
.<<....>>..
    		 ? GO:0042025 ... P27194 38816392
    159106 8z8n:A
    (2.79)    		 BS02 >8z8n:E (identical to 8z8j:E, 8z9r:E)
    ugcu
....
    		 ? GO:0042025 ... P27194 38816392
    159107 8z8n:B
    (2.79)    		 BS01 >8z8n:D (identical to 8z8j:D)
    agagaaaucaa
.<<....>>..
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159108 8z8n:B
    (2.79)    		 BS02 >8z8n:E (identical to 8z8j:E, 8z9r:E)
    ugcu
....
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159109 8z8x:A
    (3.06)    		 BS01 >8z8x:D (identical to 8z90:D)
    agagaaaucaaggcaguu
.<<....>>.........
    		 ? GO:0042025 ... P27194 38816392
    159110 8z8x:A
    (3.06)    		 BS02 >8z8x:E (identical to 8z90:E)
    gacugccuguuuuugcu
.................
    		 ? GO:0042025 ... P27194 38816392
    159111 8z8x:B
    (3.06)    		 BS01 >8z8x:D (identical to 8z90:D)
    agagaaaucaaggcaguu
.<<....>>.........
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159112 8z8x:B
    (3.06)    		 BS02 >8z8x:E (identical to 8z90:E)
    gacugccuguuuuugcu
.................
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159113 8z8x:C
    (3.06)    		 BS01 >8z8x:E (identical to 8z90:E)
    gacugccuguuuuugcu
.................
    		 ? GO:0006370 ... Q9YNA4 38816392
    159114 8z90:A
    (2.87)    		 BS01 >8z90:D (identical to 8z8x:D)
    agagaaaucaaggcaguu
.<<....>>.........
    		 ? GO:0042025 ... P27194 38816392
    159115 8z90:A
    (2.87)    		 BS02 >8z90:E (identical to 8z8x:E)
    gacugccuguuuuugcu
.................
    		 ? GO:0042025 ... P27194 38816392
    159116 8z90:B
    (2.87)    		 BS01 >8z90:D (identical to 8z8x:D)
    agagaaaucaaggcaguu
.<<....>>.........
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159117 8z90:B
    (2.87)    		 BS02 >8z90:E (identical to 8z8x:E)
    gacugccuguuuuugcu
.................
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159118 8z90:C
    (2.87)    		 BS01 >8z90:E (identical to 8z8x:E)
    gacugccuguuuuugcu
.................
    		 ? GO:0006370 ... Q9YNA4 38816392
    159119 8z97:A
    (2.65)    		 BS01 >8z97:D (identical to 8p0b:V, 8p0u:V, 8z9h:D, 8z9r:D)
    agagaaaucaag
.<<....>>...
    		 ? GO:0042025 ... P27194 38816392
    159120 8z97:A
    (2.65)    		 BS02 >8z97:E (identical to 8z85:E, 8z9h:E)
    uugcu
.....
    		 ? GO:0042025 ... P27194 38816392
    159121 8z97:A
    (2.65)    		 BS03 >8z97:F (identical to 8z9h:F, 8z9r:F)
    gccuguuuuugcu
.............
    		 ? GO:0042025 ... P27194 38816392
    159122 8z97:B
    (2.65)    		 BS01 >8z97:D (identical to 8p0b:V, 8p0u:V, 8z9h:D, 8z9r:D)
    agagaaaucaag
.<<....>>...
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159123 8z97:B
    (2.65)    		 BS02 >8z97:E (identical to 8z85:E, 8z9h:E)
    uugcu
.....
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159124 8z97:B
    (2.65)    		 BS03 >8z97:F (identical to 8z9h:F, 8z9r:F)
    gccuguuuuugcu
.............
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159125 8z97:B
    (2.65)    		 BS04 >8z97:G (identical to 8z98:D, 8z9h:G, 8z9h:K)
    gcaaaaaca
.........
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159126 8z97:C
    (2.65)    		 BS01 >8z97:F (identical to 8z9h:F, 8z9r:F)
    gccuguuuuugcu
.............
    		 ? GO:0006370 ... Q9YNA4 38816392
    159127 8z97:C
    (2.65)    		 BS02 >8z97:G (identical to 8z98:D, 8z9h:G, 8z9h:K)
    gcaaaaaca
.........
    		 ? GO:0006370 ... Q9YNA4 38816392
    159128 8z98:A
    (2.52)    		 BS01 >8z98:D (identical to 8z97:G, 8z9h:G, 8z9h:K)
    gcaaaaaca
<......>.
    		 ? GO:0042025 ... P27194 38816392
    159129 8z98:B
    (2.52)    		 BS01 >8z98:D (identical to 8z97:G, 8z9h:G, 8z9h:K)
    gcaaaaaca
<......>.
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159130 8z99:A
    (3.2)    		 BS01 >8z99:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcgcuucgcguuua
aguc
..................................................
....
    		 N/A N/A N/A 39143216
    159131 8z99:B
    (3.2)    		 BS01 >8z99:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcgcuucgcguuua
aguc
..................................................
....
    		 N/A N/A N/A 39143216
    159132 8z99:B
    (3.2)    		 BS02 >8z99:N
    cagaaaaacgcgaagcgcaccuaauuucgaauccagcaugagaagc
..............................................
    		 N/A N/A N/A 39143216
    159133 8z99:C
    (3.2)    		 BS01 >8z99:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcgcuucgcguuua
aguc
..................................................
....
    		 N/A N/A N/A 39143216
    159134 8z99:C
    (3.2)    		 BS02 >8z99:N
    cagaaaaacgcgaagcgcaccuaauuucgaauccagcaugagaagc
..............................................
    		 N/A N/A N/A 39143216
    159135 8z99:D
    (3.2)    		 BS01 >8z99:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcgcuucgcguuua
aguc
..................................................
....
    		 N/A N/A N/A 39143216
    159136 8z99:D
    (3.2)    		 BS02 >8z99:N
    cagaaaaacgcgaagcgcaccuaauuucgaauccagcaugagaagc
..............................................
    		 N/A N/A N/A 39143216
    159137 8z99:E
    (3.2)    		 BS01 >8z99:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcgcuucgcguuua
aguc
..................................................
....
    		 N/A N/A N/A 39143216
    159138 8z99:E
    (3.2)    		 BS02 >8z99:N
    cagaaaaacgcgaagcgcaccuaauuucgaauccagcaugagaagc
..............................................
    		 N/A N/A N/A 39143216
    159139 8z99:F
    (3.2)    		 BS01 >8z99:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcgcuucgcguuua
aguc
..................................................
....
    		 N/A N/A N/A 39143216
    159140 8z99:F
    (3.2)    		 BS02 >8z99:N
    cagaaaaacgcgaagcgcaccuaauuucgaauccagcaugagaagc
..............................................
    		 N/A N/A N/A 39143216
    159141 8z99:G
    (3.2)    		 BS01 >8z99:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcgcuucgcguuua
aguc
..................................................
....
    		 N/A N/A N/A 39143216
    159142 8z99:H
    (3.2)    		 BS01 >8z99:N
    cagaaaaacgcgaagcgcaccuaauuucgaauccagcaugagaagc
..............................................
    		 N/A N/A N/A 39143216
    159143 8z99:I
    (3.2)    		 BS01 >8z99:N
    cagaaaaacgcgaagcgcaccuaauuucgaauccagcaugagaagc
..............................................
    		 N/A N/A N/A 39143216
    159144 8z99:J
    (3.2)    		 BS01 >8z99:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcgcuucgcguuua
aguc
..................................................
....
    		 N/A N/A N/A 39143216
    159145 8z99:J
    (3.2)    		 BS02 >8z99:N
    cagaaaaacgcgaagcgcaccuaauuucgaauccagcaugagaagc
..............................................
    		 N/A N/A N/A 39143216
    159146 8z99:K
    (3.2)    		 BS01 >8z99:N
    cagaaaaacgcgaagcgcaccuaauuucgaauccagcaugagaagc
..............................................
    		 N/A N/A N/A 39143216
    159147 8z99:L
    (3.2)    		 BS01 >8z99:N
    cagaaaaacgcgaagcgcaccuaauuucgaauccagcaugagaagc
..............................................
    		 N/A N/A N/A 39143216
    159148 8z99:P
    (3.2)    		 BS01 >8z99:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcgcuucgcguuua
aguc
..................................................
....
    		 N/A N/A N/A 39143216
    159149 8z99:P
    (3.2)    		 BS02 >8z99:N
    cagaaaaacgcgaagcgcaccuaauuucgaauccagcaugagaagc
..............................................
    		 N/A N/A N/A 39143216
    159150 8z9c:A
    (3.01)    		 BS01 >8z9c:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcgcuucgcguu
................................................
    		 N/A N/A N/A 39143216
    159151 8z9c:A
    (3.01)    		 BS02 >8z9c:N
    cagaacgaagcgcaccuaauuucgaauccagcaugagaagc
.........................................
    		 N/A N/A N/A 39143216
    159152 8z9c:B
    (3.01)    		 BS01 >8z9c:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcgcuucgcguu
................................................
    		 N/A N/A N/A 39143216
    159153 8z9c:B
    (3.01)    		 BS02 >8z9c:N
    cagaacgaagcgcaccuaauuucgaauccagcaugagaagc
.........................................
    		 N/A N/A N/A 39143216
    159154 8z9c:C
    (3.01)    		 BS01 >8z9c:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcgcuucgcguu
................................................
    		 N/A N/A N/A 39143216
    159155 8z9c:C
    (3.01)    		 BS02 >8z9c:N
    cagaacgaagcgcaccuaauuucgaauccagcaugagaagc
.........................................
    		 N/A N/A N/A 39143216
    159156 8z9c:D
    (3.01)    		 BS01 >8z9c:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcgcuucgcguu
................................................
    		 N/A N/A N/A 39143216
    159157 8z9c:D
    (3.01)    		 BS02 >8z9c:N
    cagaacgaagcgcaccuaauuucgaauccagcaugagaagc
.........................................
    		 N/A N/A N/A 39143216
    159158 8z9c:E
    (3.01)    		 BS01 >8z9c:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcgcuucgcguu
................................................
    		 N/A N/A N/A 39143216
    159159 8z9c:E
    (3.01)    		 BS02 >8z9c:N
    cagaacgaagcgcaccuaauuucgaauccagcaugagaagc
.........................................
    		 N/A N/A N/A 39143216
    159160 8z9c:F
    (3.01)    		 BS01 >8z9c:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcgcuucgcguu
................................................
    		 N/A N/A N/A 39143216
    159161 8z9c:F
    (3.01)    		 BS02 >8z9c:N
    cagaacgaagcgcaccuaauuucgaauccagcaugagaagc
.........................................
    		 N/A N/A N/A 39143216
    159162 8z9c:G
    (3.01)    		 BS01 >8z9c:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcgcuucgcguu
................................................
    		 N/A N/A N/A 39143216
    159163 8z9c:H
    (3.01)    		 BS01 >8z9c:N
    cagaacgaagcgcaccuaauuucgaauccagcaugagaagc
.........................................
    		 N/A N/A N/A 39143216
    159164 8z9c:I
    (3.01)    		 BS01 >8z9c:N
    cagaacgaagcgcaccuaauuucgaauccagcaugagaagc
.........................................
    		 N/A N/A N/A 39143216
    159165 8z9c:J
    (3.01)    		 BS01 >8z9c:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcgcuucgcguu
................................................
    		 N/A N/A N/A 39143216
    159166 8z9c:J
    (3.01)    		 BS02 >8z9c:N
    cagaacgaagcgcaccuaauuucgaauccagcaugagaagc
.........................................
    		 N/A N/A N/A 39143216
    159167 8z9c:K
    (3.01)    		 BS01 >8z9c:N
    cagaacgaagcgcaccuaauuucgaauccagcaugagaagc
.........................................
    		 N/A N/A N/A 39143216
    159168 8z9c:L
    (3.01)    		 BS01 >8z9c:N
    cagaacgaagcgcaccuaauuucgaauccagcaugagaagc
.........................................
    		 N/A N/A N/A 39143216
    159169 8z9e:B
    (3.13)    		 BS01 >8z9e:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcg
.......................................
    		 N/A N/A N/A 39143216
    159170 8z9e:C
    (3.13)    		 BS01 >8z9e:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcg
.......................................
    		 N/A N/A N/A 39143216
    159171 8z9e:C
    (3.13)    		 BS02 >8z9e:N (identical to 8z4j:N)
    cagaacaccuaauuucgaauccagcaugagaagc
..................................
    		 N/A N/A N/A 39143216
    159172 8z9e:D
    (3.13)    		 BS01 >8z9e:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcg
.......................................
    		 N/A N/A N/A 39143216
    159173 8z9e:D
    (3.13)    		 BS02 >8z9e:N (identical to 8z4j:N)
    cagaacaccuaauuucgaauccagcaugagaagc
..................................
    		 N/A N/A N/A 39143216
    159174 8z9e:E
    (3.13)    		 BS01 >8z9e:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcg
.......................................
    		 N/A N/A N/A 39143216
    159175 8z9e:E
    (3.13)    		 BS02 >8z9e:N (identical to 8z4j:N)
    cagaacaccuaauuucgaauccagcaugagaagc
..................................
    		 N/A N/A N/A 39143216
    159176 8z9e:F
    (3.13)    		 BS01 >8z9e:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcg
.......................................
    		 N/A N/A N/A 39143216
    159177 8z9e:F
    (3.13)    		 BS02 >8z9e:N (identical to 8z4j:N)
    cagaacaccuaauuucgaauccagcaugagaagc
..................................
    		 N/A N/A N/A 39143216
    159178 8z9e:G
    (3.13)    		 BS01 >8z9e:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcg
.......................................
    		 N/A N/A N/A 39143216
    159179 8z9e:H
    (3.13)    		 BS01 >8z9e:N (identical to 8z4j:N)
    cagaacaccuaauuucgaauccagcaugagaagc
..................................
    		 N/A N/A N/A 39143216
    159180 8z9e:I
    (3.13)    		 BS01 >8z9e:N (identical to 8z4j:N)
    cagaacaccuaauuucgaauccagcaugagaagc
..................................
    		 N/A N/A N/A 39143216
    159181 8z9e:J
    (3.13)    		 BS01 >8z9e:M
    guuaaaacucuucucaugcuggauucgaaauuaggugcg
.......................................
    		 N/A N/A N/A 39143216
    159182 8z9e:J
    (3.13)    		 BS02 >8z9e:N (identical to 8z4j:N)
    cagaacaccuaauuucgaauccagcaugagaagc
..................................
    		 N/A N/A N/A 39143216
    159183 8z9e:K
    (3.13)    		 BS01 >8z9e:N (identical to 8z4j:N)
    cagaacaccuaauuucgaauccagcaugagaagc
..................................
    		 N/A N/A N/A 39143216
    159184 8z9e:L
    (3.13)    		 BS01 >8z9e:N (identical to 8z4j:N)
    cagaacaccuaauuucgaauccagcaugagaagc
..................................
    		 N/A N/A N/A 39143216
    159185 8z9h:A
    (2.7)    		 BS01 >8z9h:D (identical to 8p0b:V, 8p0u:V, 8z97:D, 8z9r:D)
    agagaaaucaag
.<<....>>...
    		 ? GO:0042025 ... P27194 38816392
    159186 8z9h:A
    (2.7)    		 BS02 >8z9h:E (identical to 8z85:E, 8z97:E)
    uugcu
.....
    		 ? GO:0042025 ... P27194 38816392
    159187 8z9h:A
    (2.7)    		 BS03 >8z9h:F (identical to 8z97:F, 8z9r:F)
    gccuguuuuugcu
.............
    		 ? GO:0042025 ... P27194 38816392
    159188 8z9h:B
    (2.7)    		 BS01 >8z9h:D (identical to 8p0b:V, 8p0u:V, 8z97:D, 8z9r:D)
    agagaaaucaag
.<<....>>...
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159189 8z9h:B
    (2.7)    		 BS02 >8z9h:E (identical to 8z85:E, 8z97:E)
    uugcu
.....
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159190 8z9h:B
    (2.7)    		 BS03 >8z9h:F (identical to 8z97:F, 8z9r:F)
    gccuguuuuugcu
.............
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159191 8z9h:B
    (2.7)    		 BS04 >8z9h:G (identical to 8z97:G, 8z98:D, 8z9h:K)
    gcaaaaaca
.........
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159192 8z9h:C
    (2.7)    		 BS01 >8z9h:F (identical to 8z97:F, 8z9r:F)
    gccuguuuuugcu
.............
    		 ? GO:0006370 ... Q9YNA4 38816392
    159193 8z9h:C
    (2.7)    		 BS02 >8z9h:G (identical to 8z97:G, 8z98:D, 8z9h:K)
    gcaaaaaca
.........
    		 ? GO:0006370 ... Q9YNA4 38816392
    159194 8z9h:H
    (2.7)    		 BS01 >8z9h:K (identical to 8z97:G, 8z98:D, 8z9h:G)
    gcaaaaaca
<......>.
    		 ? GO:0042025 ... P27194 38816392
    159195 8z9h:I
    (2.7)    		 BS01 >8z9h:K (identical to 8z97:G, 8z98:D, 8z9h:G)
    gcaaaaaca
<......>.
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159196 8z9q:A
    (2.33)    		 BS01 >8z9q:D (identical to 8z9r:G, 8z9r:K)
    agcaaaaaca
.<......>.
    		 ? GO:0042025 ... P27194 38816392
    159197 8z9q:B
    (2.33)    		 BS01 >8z9q:D (identical to 8z9r:G, 8z9r:K)
    agcaaaaaca
.<......>.
    		 2.7.7.48 GO:0000166 ... O41353 38816392
    159198 8z9r:A
    (2.58)    		 BS01 >8z9r:D (identical to 8p0b:V, 8p0u:V, 8z97:D, 8z9h:D)
    agagaaaucaag
.<<....>>...
    		 ? GO:0042025 ... P27194 38816392
    159199 8z9r:A
    (2.58)    		 BS02 >8z9r:E (identical to 8z8j:E, 8z8n:E)
    ugcu
....
    		 ? GO:0042025 ... P27194 38816392
    159200 8z9r:A
    (2.58)    		 BS03 >8z9r:F (identical to 8z97:F, 8z9h:F)
    gccuguuuuugcu
.............
    		 ? GO:0042025 ... P27194 38816392
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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