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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9401 1gt6:A (2.2) BS01 OLA 3.1.1.3 GO:0004806 ... O59952 11895431
    9402 1gt6:B (2.2) BS01 OLA 3.1.1.3 GO:0004806 ... O59952 11895431
    9403 1gt7:A (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9404 1gt7:B (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9405 1gt7:C (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9406 1gt7:D (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9407 1gt7:E (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9408 1gt7:F (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9409 1gt7:G (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9410 1gt7:H (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9411 1gt7:I (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9412 1gt7:J (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9413 1gt7:K (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9414 1gt7:L (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9415 1gt7:M (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9416 1gt7:N (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9417 1gt7:O (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9418 1gt7:P (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9419 1gt7:Q (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9420 1gt7:R (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9421 1gt7:S (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9422 1gt7:T (2.7) BS02 PGH 4.1.2.19 GO:0005737 ... P32169 11976494
    9423 1gt8:A (3.3) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9424 1gt8:A (3.3) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9425 1gt8:A (3.3) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9426 1gt8:A (3.3) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9427 1gt8:A (3.3) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    9428 1gt8:A (3.3) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    9429 1gt8:A (3.3) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    9430 1gt8:A (3.3) BS08 UAA 1.3.1.2 GO:0000166 ... Q28943 11796730
    9431 1gt8:B (3.3) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9432 1gt8:B (3.3) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9433 1gt8:B (3.3) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9434 1gt8:B (3.3) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9435 1gt8:B (3.3) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    9436 1gt8:B (3.3) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    9437 1gt8:B (3.3) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    9438 1gt8:B (3.3) BS08 UAA 1.3.1.2 GO:0000166 ... Q28943 11796730
    9439 1gt8:C (3.3) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9440 1gt8:C (3.3) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9441 1gt8:C (3.3) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9442 1gt8:C (3.3) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9443 1gt8:C (3.3) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    9444 1gt8:C (3.3) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    9445 1gt8:C (3.3) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    9446 1gt8:C (3.3) BS08 UAA 1.3.1.2 GO:0000166 ... Q28943 11796730
    9447 1gt8:D (3.3) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9448 1gt8:D (3.3) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9449 1gt8:D (3.3) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9450 1gt8:D (3.3) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9451 1gt8:D (3.3) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    9452 1gt8:D (3.3) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    9453 1gt8:D (3.3) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    9454 1gt8:D (3.3) BS08 UAA 1.3.1.2 GO:0000166 ... Q28943 11796730
    9455 1gtb:A (2.6) BS01 PZQ 2.5.1.18 GO:0004364 ... P08515 7853399
    9456 1gte:A (1.65) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9457 1gte:A (1.65) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9458 1gte:A (1.65) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9459 1gte:A (1.65) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9460 1gte:A (1.65) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    9461 1gte:A (1.65) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    9462 1gte:A (1.65) BS07 IUR 1.3.1.2 GO:0000166 ... Q28943 11796730
    9463 1gte:B (1.65) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9464 1gte:B (1.65) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9465 1gte:B (1.65) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9466 1gte:B (1.65) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9467 1gte:B (1.65) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    9468 1gte:B (1.65) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    9469 1gte:B (1.65) BS07 IUR 1.3.1.2 GO:0000166 ... Q28943 11796730
    9470 1gte:C (1.65) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9471 1gte:C (1.65) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9472 1gte:C (1.65) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9473 1gte:C (1.65) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9474 1gte:C (1.65) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    9475 1gte:C (1.65) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    9476 1gte:C (1.65) BS07 IUR 1.3.1.2 GO:0000166 ... Q28943 11796730
    9477 1gte:D (1.65) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9478 1gte:D (1.65) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9479 1gte:D (1.65) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9480 1gte:D (1.65) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9481 1gte:D (1.65) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    9482 1gte:D (1.65) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    9483 1gte:D (1.65) BS07 IUR 1.3.1.2 GO:0000166 ... Q28943 11796730
    9484 1gtf:A (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9485 1gtf:A (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9486 1gtf:B (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9487 1gtf:B (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9488 1gtf:C (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9489 1gtf:C (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9490 1gtf:D (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9491 1gtf:D (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9492 1gtf:E (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9493 1gtf:E (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9494 1gtf:F (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9495 1gtf:F (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9496 1gtf:G (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9497 1gtf:G (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9498 1gtf:H (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9499 1gtf:H (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9500 1gtf:I (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9501 1gtf:I (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9502 1gtf:J (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9503 1gtf:J (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9504 1gtf:K (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9505 1gtf:K (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9506 1gtf:L (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9507 1gtf:L (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    9508 1gtf:M (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9509 1gtf:M (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    9510 1gtf:N (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9511 1gtf:N (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    9512 1gtf:O (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9513 1gtf:O (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    9514 1gtf:P (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9515 1gtf:P (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    9516 1gtf:Q (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9517 1gtf:Q (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    9518 1gtf:R (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9519 1gtf:R (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    9520 1gtf:S (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9521 1gtf:S (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    9522 1gtf:T (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9523 1gtf:T (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    9524 1gtf:U (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9525 1gtf:U (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    9526 1gtf:V (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9527 1gtf:V (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    9528 1gth:A (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9529 1gth:A (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9530 1gth:A (2.25) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9531 1gth:A (2.25) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9532 1gth:A (2.25) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    9533 1gth:A (2.25) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    9534 1gth:A (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    9535 1gth:A (2.25) BS08 IDH 1.3.1.2 GO:0000166 ... Q28943 11796730
    9536 1gth:B (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9537 1gth:B (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9538 1gth:B (2.25) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9539 1gth:B (2.25) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9540 1gth:B (2.25) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    9541 1gth:B (2.25) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    9542 1gth:B (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    9543 1gth:B (2.25) BS08 IDH 1.3.1.2 GO:0000166 ... Q28943 11796730
    9544 1gth:C (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9545 1gth:C (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9546 1gth:C (2.25) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9547 1gth:C (2.25) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9548 1gth:C (2.25) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    9549 1gth:C (2.25) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    9550 1gth:C (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    9551 1gth:C (2.25) BS08 IUR 1.3.1.2 GO:0000166 ... Q28943 11796730
    9552 1gth:D (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9553 1gth:D (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9554 1gth:D (2.25) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9555 1gth:D (2.25) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    9556 1gth:D (2.25) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    9557 1gth:D (2.25) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    9558 1gth:D (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    9559 1gth:D (2.25) BS08 URA 1.3.1.2 GO:0000166 ... Q28943 11796730
    9560 1gti:A (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    9561 1gti:B (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    9562 1gti:C (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    9563 1gti:D (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    9564 1gti:E (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    9565 1gti:F (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    9566 1gtk:A (1.66) BS01 DPM 2.5.1.61 GO:0004418 ... P06983 12555854
    9567 1gtn:A (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9568 1gtn:A (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9569 1gtn:A (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    9570 1gtn:B (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9571 1gtn:B (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9572 1gtn:C (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9573 1gtn:C (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9574 1gtn:D (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9575 1gtn:D (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9576 1gtn:E (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9577 1gtn:E (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9578 1gtn:F (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9579 1gtn:F (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9580 1gtn:G (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9581 1gtn:G (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9582 1gtn:H (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9583 1gtn:H (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9584 1gtn:I (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9585 1gtn:I (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9586 1gtn:J (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9587 1gtn:J (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9588 1gtn:K (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9589 1gtn:K (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9590 1gtn:L (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9591 1gtn:L (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    9592 1gtn:M (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9593 1gtn:M (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    9594 1gtn:N (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9595 1gtn:N (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    9596 1gtn:O (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9597 1gtn:O (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    9598 1gtn:P (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    9599 1gtn:P (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    9600 1gtn:Q (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218