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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    460201 9f4y:A (1.4) BS01 W0S ? GO:0003676 ... P09651 N/A
    460202 9f4z:A (1.6) BS01 9KS ? GO:0003676 ... P09651 N/A
    460203 9f50:A (1.5) BS01 K2G ? GO:0003676 ... P09651 N/A
    460204 9f51:A (1.5) BS01 A1H9V ? GO:0003676 ... P09651 N/A
    460205 9f52:A (1.5) BS01 A1H9W ? GO:0003676 ... P09651 N/A
    460206 9f53:A (1.8) BS01 K3A ? GO:0003676 ... P09651 N/A
    460207 9f54:A (1.7) BS01 K3Y ? GO:0003676 ... P09651 N/A
    460208 9f55:A (1.55) BS01 A1H9U ? GO:0003676 ... P09651 N/A
    460209 9f55:A (1.55) BS02 A1H9U ? GO:0003676 ... P09651 N/A
    460210 9f5c:A (1.45) BS01 LJA ? GO:0003676 ... P09651 N/A
    460211 9f5d:A (1.6) BS01 A1H9X ? GO:0003676 ... P09651 N/A
    460212 9f5e:A (1.45) BS01 JFP ? GO:0003676 ... P09651 N/A
    460213 9f5f:A (1.4) BS01 W0J ? GO:0003676 ... P09651 N/A
    460214 9f5g:A (1.8) BS01 Z9I ? GO:0003676 ... P09651 N/A
    460215 9f5k:A (1.7) BS01 ONQ ? GO:0003676 ... P09651 N/A
    460216 9f5q:A (1.95) BS01 ACO N/A N/A Q38AU6 N/A
    460217 9f5q:B (1.95) BS01 ACO N/A N/A Q38AU6 N/A
    460218 9f6c:A (2.33) BS02 6I6 N/A N/A Q9BE39 39196032
    460219 9f6c:A (2.33) BS03 ADP N/A N/A Q9BE39 39196032
    460220 9f6c:B (2.33) BS02 6I6 N/A N/A Q9BE39 39196032
    460221 9f6c:B (2.33) BS03 ADP N/A N/A Q9BE39 39196032
    460222 9f6d:A (3.6) BS03 SF4 N/A N/A Q07864 39112807
    460223 9f6d:A (3.6) BS04 DDS N/A N/A Q07864 39112807
    460224 9f6e:A (3.74) BS03 SF4 N/A N/A Q07864 39112807
    460225 9f6e:A (3.74) BS04 DDS N/A N/A Q07864 39112807
    460226 9f6f:A (3.75) BS03 SF4 N/A N/A Q07864 39112807
    460227 9f6f:A (3.75) BS04 DDS N/A N/A Q07864 39112807
    460228 9f6i:A (3.3) BS03 SF4 N/A N/A Q07864 39112807
    460229 9f6i:A (3.3) BS04 DDS N/A N/A Q07864 39112807
    460230 9f6j:A (3.9) BS03 SF4 N/A N/A Q07864 39112807
    460231 9f6k:A (4.2) BS02 SF4 N/A N/A Q07864 39112807
    460232 9f6l:A (3.9) BS03 SF4 N/A N/A Q07864 39112807
    460233 9f7f:A (1.55) BS01 WNM ? GO:0003676 ... P09651 N/A
    460234 9f7h:A (1.43) BS01 JFM ? GO:0003676 ... P09651 N/A
    460235 9f7k:A (1.8) BS01 GSH N/A N/A Q7KK90 39062472
    460236 9f7k:A (1.8) BS02 GS8 N/A N/A Q7KK90 39062472
    460237 9f7k:B (1.8) BS01 GSH N/A N/A Q7KK90 39062472
    460238 9f7k:B (1.8) BS02 GS8 N/A N/A Q7KK90 39062472
    460239 9f7w:A (1.25) BS02 2OH N/A N/A P37231 38927044
    460240 9f7w:A (1.25) BS03 2OH N/A N/A P37231 38927044
    460241 9f7x:A (1.63) BS02 H3W N/A N/A P37231 38927044
    460242 9f8g:A (2.2) BS01 GTP N/A N/A P81947 39118608
    460243 9f8g:B (2.2) BS01 GTP N/A N/A Q6B856 39118608
    460244 9f8g:B (2.2) BS02 A1IBN N/A N/A Q6B856 39118608
    460245 9f8x:A (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    460246 9f8x:A (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    460247 9f8x:B (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    460248 9f8x:B (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    460249 9f8x:C (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    460250 9f8x:C (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    460251 9f8x:D (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    460252 9f8x:D (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    460253 9f99:A (2.803) BS01 A1IA5 N/A N/A Q96NY9 39015284
    460254 9f99:C (2.803) BS01 A1IA5 N/A N/A Q96NY9 39015284
    460255 9f99:E (2.803) BS01 A1IA5 N/A N/A Q96NY9 39015284
    460256 9f99:E (2.803) BS02 A1IA5 N/A N/A Q96NY9 39015284
    460257 9f99:G (2.803) BS01 A1IA5 N/A N/A Q96NY9 39015284
    460258 9f99:G (2.803) BS02 A1IA5 N/A N/A Q96NY9 39015284
    460259 9f9a:A (2.911) BS01 A1IA6 N/A N/A Q96NY9 39015284
    460260 9f9a:C (2.911) BS01 A1IA6 N/A N/A Q96NY9 39015284
    460261 9f9a:E (2.911) BS01 A1IA6 N/A N/A Q96NY9 39015284
    460262 9f9a:E (2.911) BS02 A1IA6 N/A N/A Q96NY9 39015284
    460263 9f9a:G (2.911) BS01 A1IA6 N/A N/A Q96NY9 39015284
    460264 9f9a:G (2.911) BS02 A1IA6 N/A N/A Q96NY9 39015284
    460265 9f9k:A (2.728) BS02 A1IA7 N/A N/A Q96NY9 39015284
    460266 9f9k:A (2.728) BS03 A1IA7 N/A N/A Q96NY9 39015284
    460267 9f9l:A (2.02) BS02 A1IA8 N/A N/A Q96NY9 39015284
    460268 9f9l:C (2.02) BS02 A1IA8 N/A N/A Q96NY9 39015284
    460269 9f9m:A (2.469) BS03 A1IA4 N/A N/A Q96NY9 39015284
    460270 9f9m:C (2.469) BS02 A1IA4 N/A N/A Q96NY9 39015284
    460271 9f9z:A (2.279) BS01 A1IBI N/A GO:0004336 ... P04062 38932616
    460272 9fa3:A (1.36) BS01 A1IBC N/A N/A P04062 38932616
    460273 9fa6:A (1.49) BS01 A1IBE N/A N/A P04062 38932616
    460274 9fa6:A (1.49) BS02 A1IBG N/A N/A P04062 38932616
    460275 9fa6:A (1.49) BS03 A1IBE N/A N/A P04062 38932616
    460276 9fad:A (1.8) BS01 A1IBD N/A N/A P04062 38932616
    460277 9fal:A (1.39) BS01 A1IBQ N/A N/A P04062 38932616
    460278 9fal:A (1.39) BS02 BAQ N/A N/A P04062 38932616
    460279 9fay:A (1.4) BS01 A1IBR N/A N/A P04062 38932616
    460280 9faz:A (1.63) BS01 A1IBP N/A N/A P04062 38932616
    460281 9fb2:A (1.14) BS01 A1IBO N/A N/A P04062 38932616
    460282 9fb8:A (1.727) BS01 ANP N/A N/A Q9H611 N/A
    460283 9fb8:A (1.727) BS02 O0J N/A N/A Q9H611 N/A
    460284 9fb8:A (1.727) BS03 O0J N/A N/A Q9H611 N/A
    460285 9fbf:A (3.01) BS02 A1IBM N/A N/A Q9PTN2 38858308
    460286 9fbx:A (1.602) BS01 A1IBV N/A N/A P25440 38866424
    460287 9fby:A (1.853) BS01 A1IB5 N/A N/A O60885 38866424
    460288 9fcd:A (1.5) BS01 SAH N/A N/A A0A1W6R556 39121999
    460289 9fce:A (1.95) BS01 SAM N/A N/A A0A1W6R583 39121999
    460290 9fce:A (1.95) BS03 BU3 N/A N/A A0A1W6R583 39121999
    460291 9fce:B (1.95) BS01 SAM N/A N/A A0A1W6R583 39121999
    460292 9fcf:A (2.36) BS01 GUO N/A N/A G7IFI7 39186852
    460293 9fcg:A (1.54) BS01 2ER N/A N/A G7IFI7 39186852
    460294 9fcg:A (1.54) BS02 2ER N/A N/A G7IFI7 39186852
    460295 9fci:D (3.2) BS02 A1IB8 N/A N/A O94782 39190802
    460296 9fcj:D (2.7) BS02 JDA N/A N/A O94782 39190802
    460297 9fcl:A (1.75) BS01 SAM N/A N/A A0A1W6R556 39121999
    460298 9fcq:A (1.4) BS01 SAH N/A N/A A0A1W6R556 39121999
    460299 9fcs:A (1.6) BS01 SAH N/A N/A A0A1W6R556 39121999
    460300 9fcs:B (1.6) BS01 SAH N/A N/A A0A1W6R556 39121999
    460301 9fcu:A (1.85) BS01 SAH N/A N/A A0A1W6R556 39121999
    460302 9fcu:B (1.85) BS01 SAH N/A N/A A0A1W6R556 39121999
    460303 9fcu:C (1.85) BS01 SAH N/A N/A A0A1W6R556 39121999
    460304 9fcu:D (1.85) BS01 SAH N/A N/A A0A1W6R556 39121999
    460305 9fcx:A (1.8) BS01 SAH N/A N/A A0A1W6R556 39121999
    460306 9fcx:B (1.8) BS01 SAH N/A N/A A0A1W6R556 39121999
    460307 9fcy:A (1.85) BS01 ADE N/A N/A A0A1W6R556 39121999
    460308 9fcy:B (1.85) BS01 ADE N/A N/A A0A1W6R556 39121999
    460309 9fcy:C (1.85) BS01 ADE N/A N/A A0A1W6R556 39121999
    460310 9fcy:D (1.85) BS01 ADE N/A N/A A0A1W6R556 39121999
    460311 9fd3:A (1.4) BS01 SAH N/A N/A A0A1W6R556 39121999
    460312 9fdd:A (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    460313 9fdd:B (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    460314 9fdd:C (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    460315 9fdd:D (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    460316 9fdd:E (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    460317 9fdd:F (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    460318 9fdd:G (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    460319 9fdd:H (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    460320 9fdi:A (1.41) BS01 A1IB1 N/A N/A P04062 38932616
    460321 9fdi:A (1.41) BS02 A1IB1 N/A N/A P04062 38932616
    460322 9fdj:A (1.7) BS01 FES N/A GO:0003954 ... O66842 38960077
    460323 9fdj:B (1.7) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460324 9fdj:B (1.7) BS02 FMN N/A GO:0046872 ... O66841 38960077
    460325 9fdj:B (1.7) BS03 NAI N/A GO:0046872 ... O66841 38960077
    460326 9fdj:C (1.7) BS01 FES N/A GO:0003954 ... O66842 38960077
    460327 9fdj:D (1.7) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460328 9fdj:D (1.7) BS02 FMN N/A GO:0046872 ... O66841 38960077
    460329 9fdj:D (1.7) BS03 NAI N/A GO:0046872 ... O66841 38960077
    460330 9fdk:A (1.8) BS01 FES N/A GO:0003954 ... O66842 38960077
    460331 9fdk:B (1.8) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460332 9fdk:B (1.8) BS02 FMN N/A GO:0046872 ... O66841 38960077
    460333 9fdk:C (1.8) BS01 FES N/A GO:0003954 ... O66842 38960077
    460334 9fdk:D (1.8) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460335 9fdk:D (1.8) BS02 FMN N/A GO:0046872 ... O66841 38960077
    460336 9fdv:A (1.986) BS01 FES N/A GO:0003954 ... O66842 38960077
    460337 9fdv:B (1.986) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460338 9fdv:B (1.986) BS02 FNR N/A GO:0046872 ... O66841 38960077
    460339 9fdv:C (1.986) BS01 FES N/A GO:0003954 ... O66842 38960077
    460340 9fdv:D (1.986) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460341 9fdv:D (1.986) BS02 FNR N/A GO:0046872 ... O66841 38960077
    460342 9fe0:A (2.2) BS01 FES N/A GO:0003954 ... O66842 38960077
    460343 9fe0:B (2.2) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460344 9fe0:B (2.2) BS02 FNR N/A GO:0046872 ... O66841 38960077
    460345 9fe0:B (2.2) BS03 NAD N/A GO:0046872 ... O66841 38960077
    460346 9fe0:C (2.2) BS01 FES N/A GO:0003954 ... O66842 38960077
    460347 9fe0:D (2.2) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460348 9fe0:D (2.2) BS02 FNR N/A GO:0046872 ... O66841 38960077
    460349 9fe0:D (2.2) BS03 NAD N/A GO:0046872 ... O66841 38960077
    460350 9fe5:A (2.1) BS01 FES N/A GO:0003954 ... O66842 38960077
    460351 9fe5:B (2.1) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460352 9fe5:B (2.1) BS02 FNR N/A GO:0046872 ... O66841 38960077
    460353 9fe5:B (2.1) BS03 NAI N/A GO:0046872 ... O66841 38960077
    460354 9fe5:C (2.1) BS01 FES N/A GO:0003954 ... O66842 38960077
    460355 9fe5:D (2.1) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460356 9fe5:D (2.1) BS02 FNR N/A GO:0046872 ... O66841 38960077
    460357 9fe5:D (2.1) BS03 NAI N/A GO:0046872 ... O66841 38960077
    460358 9fe7:A (2.28) BS01 FES N/A GO:0003954 ... O66842 38960077
    460359 9fe7:B (2.28) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460360 9fe7:B (2.28) BS02 FMN N/A GO:0046872 ... O66841 38960077
    460361 9fe7:C (2.28) BS01 FES N/A GO:0003954 ... O66842 38960077
    460362 9fe7:D (2.28) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460363 9fe7:D (2.28) BS02 FMN N/A GO:0046872 ... O66841 38960077
    460364 9fe8:A (2.34) BS01 FES N/A GO:0003954 ... O66842 38960077
    460365 9fe8:B (2.34) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460366 9fe8:B (2.34) BS02 FNR N/A GO:0046872 ... O66841 38960077
    460367 9fe8:C (2.34) BS01 FES N/A GO:0003954 ... O66842 38960077
    460368 9fe8:D (2.34) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460369 9fe8:D (2.34) BS02 FNR N/A GO:0046872 ... O66841 38960077
    460370 9fea:A (1.66) BS01 FES N/A GO:0003954 ... O66842 38960077
    460371 9fea:B (1.66) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460372 9fea:B (1.66) BS02 FNR N/A GO:0046872 ... O66841 38960077
    460373 9fea:B (1.66) BS03 NAD N/A GO:0046872 ... O66841 38960077
    460374 9fea:C (1.66) BS01 FES N/A GO:0003954 ... O66842 38960077
    460375 9fea:D (1.66) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460376 9fea:D (1.66) BS02 FNR N/A GO:0046872 ... O66841 38960077
    460377 9fea:D (1.66) BS03 NAD N/A GO:0046872 ... O66841 38960077
    460378 9feb:A (1.698) BS01 NAP N/A N/A A0A7C5VFX3 N/A
    460379 9feb:B (1.698) BS01 NAP N/A N/A A0A7C5VFX3 N/A
    460380 9feb:C (1.698) BS01 NAP N/A N/A A0A7C5VFX3 N/A
    460381 9feb:D (1.698) BS02 NAP N/A N/A A0A7C5VFX3 N/A
    460382 9feh:A (1.99) BS01 A1IB6 N/A N/A P0DTD1
    P41212    		 39188530
    460383 9fet:A (2.4) BS01 REB N/A N/A Q86Y07 N/A
    460384 9ffd:A (1.75) BS01 NAP N/A N/A P42330 39140045
    460385 9ffd:A (1.75) BS02 A1ICG N/A N/A P42330 39140045
    460386 9ffd:B (1.75) BS01 NAP N/A N/A P42330 39140045
    460387 9ffd:B (1.75) BS02 A1ICG N/A N/A P42330 39140045
    460388 9fhd:A (1.845) BS01 A1ICK N/A N/A P50053 39179180
    460389 9fhd:B (1.845) BS01 A1ICK N/A N/A P50053 39179180
    460390 9fhe:A (2.313) BS01 A1ICK N/A N/A P50053 39179180
    460391 9fhe:B (2.313) BS01 A1ICK N/A N/A P50053 39179180
    460392 9fif:A (1.77) BS01 FES N/A GO:0003954 ... O66842 38960077
    460393 9fif:B (1.77) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460394 9fif:B (1.77) BS02 FMN N/A GO:0046872 ... O66841 38960077
    460395 9fif:B (1.77) BS03 NAI N/A GO:0046872 ... O66841 38960077
    460396 9fif:C (1.77) BS01 FES N/A GO:0003954 ... O66842 38960077
    460397 9fif:D (1.77) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    460398 9fif:D (1.77) BS02 FMN N/A GO:0046872 ... O66841 38960077
    460399 9fih:A (2.08) BS01 FES N/A GO:0003954 ... O66842 38960077
    460400 9fih:B (2.08) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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