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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    459601 9emc:E (3.26) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y230 N/A
    459602 9emc:E (3.26) BS02 ATP 3.6.4.12 GO:0000492 ... Q9Y230 N/A
    459603 9emc:F (3.26) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y230 N/A
    459604 9emc:F (3.26) BS02 ATP 3.6.4.12 GO:0000492 ... Q9Y230 N/A
    459605 9emj:A (1.79) BS01 TO1 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    459606 9emj:A (1.79) BS02 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    459607 9emj:A (1.79) BS03 MGP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    459608 9eml:A (2.4) BS01 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    459609 9eml:A (2.4) BS02 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    459610 9eml:A (2.4) BS03 EDT 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    459611 9eml:A (2.4) BS04 V9G 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    459612 9emu:A (1.4) BS01 RS3 N/A N/A K4R812 39097184
    459613 9emu:A (1.4) BS02 PO4 N/A N/A K4R812 39097184
    459614 9emu:A (1.4) BS03 RS3 N/A N/A K4R812 39097184
    459615 9emu:B (1.4) BS01 RS3 N/A N/A K4R812 39097184
    459616 9emu:B (1.4) BS02 RS3 N/A N/A K4R812 39097184
    459617 9emu:B (1.4) BS03 PO4 N/A N/A K4R812 39097184
    459618 9emu:C (1.4) BS01 RS3 N/A N/A K4R812 39097184
    459619 9emu:C (1.4) BS02 PO4 N/A N/A K4R812 39097184
    459620 9emu:C (1.4) BS03 RS3 N/A N/A K4R812 39097184
    459621 9emu:D (1.4) BS01 RS3 N/A N/A K4R812 39097184
    459622 9emu:D (1.4) BS02 RS3 N/A N/A K4R812 39097184
    459623 9emu:D (1.4) BS03 PO4 N/A N/A K4R812 39097184
    459624 9emv:A (2.34) BS01 SGV 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    459625 9emv:A (2.34) BS02 GTA 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    459626 9emv:A (2.34) BS03 SAH 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    459627 9emv:A (2.34) BS04 V9G 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    459628 9end:A (1.95) BS01 NDP N/A GO:0004459 ... Q8TWG5 N/A
    459629 9end:B (1.95) BS01 NDP N/A GO:0004459 ... Q8TWG5 N/A
    459630 9eng:A (2.2) BS03 A1H55 N/A N/A A6T5R0 39236497
    459631 9enh:A (2.3) BS01 FAD N/A N/A S4S6Z0 39152524
    459632 9enh:B (2.3) BS01 FAD N/A N/A S4S6Z0 39152524
    459633 9enh:C (2.3) BS01 FAD N/A N/A S4S6Z0 39152524
    459634 9enh:D (2.3) BS01 FAD N/A N/A S4S6Z0 39152524
    459635 9eni:A (2.1) BS01 FDA N/A N/A S4S6Z0 39152524
    459636 9eni:A (2.1) BS02 GLN N/A N/A S4S6Z0 39152524
    459637 9eni:B (2.1) BS01 FDA N/A N/A S4S6Z0 39152524
    459638 9eni:B (2.1) BS02 GLN N/A N/A S4S6Z0 39152524
    459639 9eni:C (2.1) BS01 FDA N/A N/A S4S6Z0 39152524
    459640 9eni:C (2.1) BS02 GLN N/A N/A S4S6Z0 39152524
    459641 9eni:D (2.1) BS01 FDA N/A N/A S4S6Z0 39152524
    459642 9eni:D (2.1) BS02 GLN N/A N/A S4S6Z0 39152524
    459643 9enj:A (2.1) BS01 FDA N/A N/A S4S6Z0 39152524
    459644 9enj:A (2.1) BS02 GLU N/A N/A S4S6Z0 39152524
    459645 9enj:B (2.1) BS01 FDA N/A N/A S4S6Z0 39152524
    459646 9enj:B (2.1) BS02 GLU N/A N/A S4S6Z0 39152524
    459647 9enj:C (2.1) BS01 FDA N/A N/A S4S6Z0 39152524
    459648 9enj:C (2.1) BS02 GLU N/A N/A S4S6Z0 39152524
    459649 9enj:D (2.1) BS01 FDA N/A N/A S4S6Z0 39152524
    459650 9enj:D (2.1) BS02 GLU N/A N/A S4S6Z0 39152524
    459651 9enk:A (2.2) BS01 FDA N/A N/A S4S6Z0 39152524
    459652 9enk:A (2.2) BS02 PHE N/A N/A S4S6Z0 39152524
    459653 9enk:B (2.2) BS01 FDA N/A N/A S4S6Z0 39152524
    459654 9enk:B (2.2) BS02 PHE N/A N/A S4S6Z0 39152524
    459655 9enk:C (2.2) BS01 FDA N/A N/A S4S6Z0 39152524
    459656 9enk:C (2.2) BS02 PHE N/A N/A S4S6Z0 39152524
    459657 9enk:D (2.2) BS01 FDA N/A N/A S4S6Z0 39152524
    459658 9enk:D (2.2) BS02 PHE N/A N/A S4S6Z0 39152524
    459659 9enn:A (1.8) BS01 FDA N/A N/A S4S6Z0 39152524
    459660 9enn:A (1.8) BS02 ALY N/A N/A S4S6Z0 39152524
    459661 9enn:B (1.8) BS01 FDA N/A N/A S4S6Z0 39152524
    459662 9enn:B (1.8) BS02 ALY N/A N/A S4S6Z0 39152524
    459663 9enn:C (1.8) BS01 FDA N/A N/A S4S6Z0 39152524
    459664 9enn:C (1.8) BS02 ALY N/A N/A S4S6Z0 39152524
    459665 9enn:D (1.8) BS01 FDA N/A N/A S4S6Z0 39152524
    459666 9enn:D (1.8) BS02 ALY N/A N/A S4S6Z0 39152524
    459667 9ent:A (2.2) BS01 5JK N/A N/A Q64610 39008358
    459668 9eo0:A (2.5) BS01 A1H56 N/A N/A Q9NZQ7 38894909
    459669 9eo0:B (2.5) BS01 A1H56 N/A N/A Q9NZQ7 38894909
    459670 9eo0:C (2.5) BS01 A1H56 N/A N/A Q9NZQ7 38894909
    459671 9eo0:D (2.5) BS01 A1H56 N/A N/A Q9NZQ7 38894909
    459672 9eo0:E (2.5) BS01 A1H56 N/A N/A Q9NZQ7 38894909
    459673 9eo0:F (2.5) BS01 A1H56 N/A N/A Q9NZQ7 38894909
    459674 9eo4:B (2.66) BS01 CLR N/A GO:0001504 ... Q01959 39112703
    459675 9eo4:B (2.66) BS02 Y01 N/A GO:0001504 ... Q01959 39112703
    459676 9eo4:B (2.66) BS03 CLR N/A GO:0001504 ... Q01959 39112703
    459677 9eo4:B (2.66) BS04 CLR N/A GO:0001504 ... Q01959 39112703
    459678 9eo4:B (2.66) BS06 COC N/A GO:0001504 ... Q01959 39112703
    459679 9eo8:BBB (1.76) BS01 NH3 4.6.1.18 GO:0004519 ... P61824 38727007
    459680 9eoy:C (2.1) BS01 A1H6K N/A N/A Q9UQM7 39275999
    459681 9eoy:D (2.1) BS01 A1H6K N/A N/A Q9UQM7 39275999
    459682 9ep8:A (2.63) BS01 A1H6L N/A N/A O75116 N/A
    459683 9ep8:B (2.63) BS01 A1H6L N/A N/A O75116 N/A
    459684 9ep8:C (2.63) BS01 A1H6L N/A N/A O75116 N/A
    459685 9ep8:D (2.63) BS01 A1H6L N/A N/A O75116 N/A
    459686 9epv:A (2.3) BS01 A1H6H 2.7.11.1 GO:0004672 ... P68400 39067440
    459687 9epv:B (2.3) BS01 A1H6H 2.7.11.1 GO:0004672 ... P68400 39067440
    459688 9epw:B (2.3) BS01 A1H6F 2.7.11.1 GO:0004672 ... P68400 39067440
    459689 9epx:A (2.6) BS01 A1H6E 2.7.11.1 GO:0004672 ... P68400 N/A
    459690 9epx:B (2.6) BS01 A1H6E 2.7.11.1 GO:0004672 ... P68400 N/A
    459691 9epy:A (2.65) BS01 A1H6G 2.7.11.1 GO:0004672 ... P68400 39067440
    459692 9epy:B (2.65) BS01 A1H6G 2.7.11.1 GO:0004672 ... P68400 39067440
    459693 9epz:A (2.65) BS01 A1H6I 2.7.11.1 GO:0004672 ... P68400 39067440
    459694 9epz:B (2.65) BS01 A1H6I 2.7.11.1 GO:0004672 ... P68400 39067440
    459695 9eq0:A (3.15) BS01 A1H6D 2.7.11.1 GO:0004672 ... P68400 39067440
    459696 9eq0:B (3.15) BS01 A1H6D 2.7.11.1 GO:0004672 ... P68400 39067440
    459697 9eq1:A (3.0) BS01 A1H6J 2.7.11.1 GO:0004672 ... P68400 39067440
    459698 9eq1:B (3.0) BS01 A1H6J 2.7.11.1 GO:0004672 ... P68400 39067440
    459699 9eq5:A (2.17) BS01 PPH N/A N/A F0SIS6 38713131
    459700 9eq5:A (2.17) BS02 PPH N/A N/A F0SIS6 38713131
    459701 9eq5:B (2.17) BS01 PPH N/A N/A F0SIS6 38713131
    459702 9eq5:B (2.17) BS02 PPH N/A N/A F0SIS6 38713131
    459703 9eq5:C (2.17) BS01 PPH N/A N/A F0SIS6 38713131
    459704 9eq5:C (2.17) BS02 PPH N/A N/A F0SIS6 38713131
    459705 9eq5:D (2.17) BS01 PPH N/A N/A F0SIS6 38713131
    459706 9eq5:D (2.17) BS02 PPH N/A N/A F0SIS6 38713131
    459707 9eq7:A (3.23) BS01 BGC N/A N/A N/A 38992036
    459708 9eq7:A (3.23) BS02 BGC N/A N/A N/A 38992036
    459709 9eq7:B (3.23) BS01 BGC N/A N/A N/A 38992036
    459710 9eq7:B (3.23) BS02 BGC N/A N/A N/A 38992036
    459711 9eq7:C (3.23) BS01 BGC N/A N/A N/A 38992036
    459712 9eq7:C (3.23) BS02 BGC N/A N/A N/A 38992036
    459713 9eq7:D (3.23) BS01 BGC N/A N/A N/A 38992036
    459714 9eq7:D (3.23) BS02 BGC N/A N/A N/A 38992036
    459715 9eq7:E (3.23) BS01 BGC N/A N/A N/A 38992036
    459716 9eq7:E (3.23) BS02 BGC N/A N/A N/A 38992036
    459717 9eq7:F (3.23) BS01 BGC N/A N/A N/A 38992036
    459718 9eq7:F (3.23) BS02 BGC N/A N/A N/A 38992036
    459719 9eq7:G (3.23) BS01 BGC N/A N/A N/A 38992036
    459720 9eq7:G (3.23) BS02 BGC N/A N/A N/A 38992036
    459721 9eq7:H (3.23) BS01 BGC N/A N/A N/A 38992036
    459722 9eq7:H (3.23) BS02 BGC N/A N/A N/A 38992036
    459723 9eq7:I (3.23) BS01 BGC N/A N/A N/A 38992036
    459724 9eq7:I (3.23) BS02 BDP N/A N/A N/A 38992036
    459725 9eq7:I (3.23) BS03 BGC N/A N/A N/A 38992036
    459726 9eq7:J (3.23) BS01 BGC N/A N/A N/A 38992036
    459727 9eq7:J (3.23) BS02 BGC N/A N/A N/A 38992036
    459728 9eq7:K (3.23) BS01 BGC N/A N/A N/A 38992036
    459729 9eq7:K (3.23) BS02 BGC N/A N/A N/A 38992036
    459730 9eq7:L (3.23) BS01 BGC N/A N/A N/A 38992036
    459731 9eq7:L (3.23) BS02 BGC N/A N/A N/A 38992036
    459732 9eq7:M (3.23) BS01 BGC N/A N/A N/A 38992036
    459733 9eq7:M (3.23) BS02 BGC N/A N/A N/A 38992036
    459734 9eq7:N (3.23) BS01 BGC N/A N/A N/A 38992036
    459735 9eq7:N (3.23) BS02 BGC N/A N/A N/A 38992036
    459736 9eq7:O (3.23) BS01 BGC N/A N/A N/A 38992036
    459737 9eq7:O (3.23) BS02 BGC N/A N/A N/A 38992036
    459738 9eq7:P (3.23) BS01 BGC N/A N/A N/A 38992036
    459739 9eq7:P (3.23) BS02 BGC N/A N/A N/A 38992036
    459740 9eq7:Q (3.23) BS01 BGC N/A N/A N/A 38992036
    459741 9eq7:Q (3.23) BS02 BGC N/A N/A N/A 38992036
    459742 9eq7:R (3.23) BS01 BGC N/A N/A N/A 38992036
    459743 9eq7:R (3.23) BS02 BGC N/A N/A N/A 38992036
    459744 9eq7:S (3.23) BS01 BGC N/A N/A N/A 38992036
    459745 9eq7:S (3.23) BS02 BGC N/A N/A N/A 38992036
    459746 9eq7:T (3.23) BS01 BGC N/A N/A N/A 38992036
    459747 9eq7:T (3.23) BS02 BGC N/A N/A N/A 38992036
    459748 9eq7:U (3.23) BS01 BGC N/A N/A N/A 38992036
    459749 9eq7:U (3.23) BS02 BGC N/A N/A N/A 38992036
    459750 9eq7:V (3.23) BS01 BGC N/A N/A N/A 38992036
    459751 9eq7:V (3.23) BS02 BGC N/A N/A N/A 38992036
    459752 9eq7:W (3.23) BS01 BGC N/A N/A N/A 38992036
    459753 9eq7:W (3.23) BS02 BGC N/A N/A N/A 38992036
    459754 9eq7:X (3.23) BS01 BGC N/A N/A N/A 38992036
    459755 9eq7:X (3.23) BS02 BGC N/A N/A N/A 38992036
    459756 9eq7:Y (3.23) BS01 BGC N/A N/A N/A 38992036
    459757 9eq7:Y (3.23) BS02 BGC N/A N/A N/A 38992036
    459758 9eq7:Z (3.23) BS01 BGC N/A N/A N/A 38992036
    459759 9eq7:Z (3.23) BS02 BGC N/A N/A N/A 38992036
    459760 9eqf:A (1.6) BS02 ARG N/A GO:0016020 ... Q6WZB0 39114090
    459761 9eqg:A (2.4) BS01 PGW N/A N/A P14867 39261733
    459762 9eqg:A (2.4) BS02 PT5 N/A N/A P14867 39261733
    459763 9eqg:A (2.4) BS03 ABU N/A N/A P14867 39261733
    459764 9eqg:B (2.4) BS01 ABU N/A N/A P28472 39261733
    459765 9eqg:C (2.4) BS01 MAN N/A N/A P18507 39261733
    459766 9eqg:C (2.4) BS02 A1H6W N/A N/A P18507 39261733
    459767 9eqg:D (2.4) BS01 MAN N/A N/A P14867 39261733
    459768 9eqg:D (2.4) BS02 PGW N/A N/A P14867 39261733
    459769 9eqg:D (2.4) BS03 A1H6W N/A N/A P14867 39261733
    459770 9eqg:D (2.4) BS04 PT5 N/A N/A P14867 39261733
    459771 9eqg:E (2.4) BS01 PGW N/A N/A P28472 39261733
    459772 9eqg:E (2.4) BS02 ABU N/A N/A P28472 39261733
    459773 9eqj:C (2.05) BS01 A1H6O N/A N/A P40337 38942127
    459774 9eqj:F (2.05) BS01 A1H6O N/A N/A P40337 38942127
    459775 9eqm:C (2.19) BS01 A1H9F N/A N/A P40337 38942127
    459776 9erx:R (2.9) BS01 A1H66 N/A GO:0002866 ... P21554 38826401
    459777 9ery:A (2.7) BS01 VVH N/A N/A Q9NZQ7 39032403
    459778 9ery:B (2.7) BS01 VVH N/A N/A Q9NZQ7 39032403
    459779 9esm:A (3.06) BS01 BGC N/A N/A N/A 38992036
    459780 9esm:A (3.06) BS02 BGC N/A N/A N/A 38992036
    459781 9esm:B (3.06) BS01 BGC N/A N/A N/A 38992036
    459782 9esm:C (3.06) BS01 BGC N/A N/A N/A 38992036
    459783 9esm:D (3.06) BS01 BGC N/A N/A N/A 38992036
    459784 9esm:E (3.06) BS01 BGC N/A N/A N/A 38992036
    459785 9esm:E (3.06) BS02 BGC N/A N/A N/A 38992036
    459786 9esm:F (3.06) BS01 BGC N/A N/A N/A 38992036
    459787 9esm:G (3.06) BS01 BGC N/A N/A N/A 38992036
    459788 9esm:G (3.06) BS02 BDP N/A N/A N/A 38992036
    459789 9esm:G (3.06) BS03 BGC N/A N/A N/A 38992036
    459790 9esm:H (3.06) BS01 BGC N/A N/A N/A 38992036
    459791 9esm:H (3.06) BS02 BGC N/A N/A N/A 38992036
    459792 9esm:I (3.06) BS01 BGC N/A N/A N/A 38992036
    459793 9esm:I (3.06) BS02 BGC N/A N/A N/A 38992036
    459794 9esm:J (3.06) BS01 BGC N/A N/A N/A 38992036
    459795 9esm:J (3.06) BS02 BGC N/A N/A N/A 38992036
    459796 9esm:K (3.06) BS01 BDP N/A N/A N/A 38992036
    459797 9esm:K (3.06) BS02 BGC N/A N/A N/A 38992036
    459798 9esm:K (3.06) BS03 BGC N/A N/A N/A 38992036
    459799 9esm:L (3.06) BS01 BGC N/A N/A N/A 38992036
    459800 9esm:L (3.06) BS02 BGC N/A N/A N/A 38992036
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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