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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    459201 9c0b:J (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    459202 9c0b:K (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    459203 9c0b:L (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    459204 9c0b:M (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    459205 9c0b:N (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    459206 9c0b:O (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    459207 9c0b:P (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    459208 9c0b:Q (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    459209 9c0b:R (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    459210 9c0b:S (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    459211 9c0b:T (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    459212 9c0b:U (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    459213 9c0j:A (3.17) BS04 TTP N/A N/A A0AA43TDM1 39208082
    459214 9c0y:A (1.4) BS01 A1ATR N/A N/A Q00610 N/A
    459215 9c0z:A (1.51) BS01 A1ATQ N/A N/A Q00610 N/A
    459216 9c11:A (1.95) BS01 THP N/A N/A P00644 N/A
    459217 9c11:B (1.95) BS01 THP N/A N/A P00644 N/A
    459218 9c1a:A (1.96) BS01 GDP N/A N/A O14807 39196705
    459219 9c1b:A (2.27) BS01 GDP N/A N/A O14807 39196705
    459220 9c1b:B (2.27) BS01 GDP N/A N/A O14807 39196705
    459221 9c1b:C (2.27) BS01 GDP N/A N/A O14807 39196705
    459222 9c1b:D (2.27) BS01 GDP N/A N/A O14807 39196705
    459223 9c1q:A (1.8) BS01 A1ATT N/A N/A Q9Y4B6 N/A
    459224 9c1r:A (1.59) BS01 A1ATS N/A N/A P08581 39088797
    459225 9c1w:A (2.0) BS01 XOO N/A N/A P31751 N/A
    459226 9c20:A (2.699) BS01 5N6 N/A N/A A0A0H2YT71 N/A
    459227 9c3s:A (2.16) BS04 FRU N/A N/A A0A8I1DKW0 39244607
    459228 9c3s:A (2.16) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    459229 9c3s:B (2.16) BS05 FRU N/A N/A A0A8I1DKW0 39244607
    459230 9c3s:B (2.16) BS06 SFG N/A N/A A0A8I1DKW0 39244607
    459231 9c3s:C (2.16) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    459232 9c3s:D (2.16) BS04 SFG N/A N/A A0A8I1DKW0 39244607
    459233 9c3t:A (2.37) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    459234 9c3t:B (2.37) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    459235 9c3t:C (2.37) BS04 SFG N/A N/A A0A8I1DKW0 39244607
    459236 9c3t:D (2.37) BS04 SFG N/A N/A A0A8I1DKW0 39244607
    459237 9c3u:A (2.77) BS04 FRU N/A N/A A0A8I1DKW0 39244607
    459238 9c3u:A (2.77) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    459239 9c3u:B (2.77) BS05 FRU N/A N/A A0A8I1DKW0 39244607
    459240 9c3u:B (2.77) BS06 SFG N/A N/A A0A8I1DKW0 39244607
    459241 9c3u:C (2.77) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    459242 9c3u:D (2.77) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    459243 9c4i:A (1.3) BS01 MMA N/A GO:0005537 ... C0HK20 N/A
    459244 9c4i:A (1.3) BS02 MAN N/A GO:0005537 ... C0HK20 N/A
    459245 9c4i:B (1.3) BS01 MMA N/A GO:0005537 ... C0HK20 N/A
    459246 9c4i:B (1.3) BS02 MAN N/A GO:0005537 ... C0HK20 N/A
    459247 9c4m:A (2.48) BS01 IMP N/A N/A P31002 39235234
    459248 9c4m:A (2.48) BS02 A1AUF N/A N/A P31002 39235234
    459249 9c4m:A (2.48) BS03 A1AUF N/A N/A P31002 39235234
    459250 9c4m:B (2.48) BS01 A1AUF N/A N/A P31002 39235234
    459251 9c4m:B (2.48) BS02 IMP N/A N/A P31002 39235234
    459252 9c4m:B (2.48) BS03 A1AUF N/A N/A P31002 39235234
    459253 9c4m:C (2.48) BS01 A1AUF N/A N/A P31002 39235234
    459254 9c4m:C (2.48) BS02 IMP N/A N/A P31002 39235234
    459255 9c4m:C (2.48) BS03 A1AUF N/A N/A P31002 39235234
    459256 9c4m:D (2.48) BS01 A1AUF N/A N/A P31002 39235234
    459257 9c4m:D (2.48) BS02 IMP N/A N/A P31002 39235234
    459258 9c4m:D (2.48) BS03 A1AUF N/A N/A P31002 39235234
    459259 9c4m:E (2.48) BS01 IMP N/A N/A P31002 39235234
    459260 9c4m:E (2.48) BS02 A1AUF N/A N/A P31002 39235234
    459261 9c4m:E (2.48) BS03 A1AUF N/A N/A P31002 39235234
    459262 9c4m:F (2.48) BS01 A1AUF N/A N/A P31002 39235234
    459263 9c4m:F (2.48) BS02 IMP N/A N/A P31002 39235234
    459264 9c4m:F (2.48) BS03 A1AUF N/A N/A P31002 39235234
    459265 9c4m:G (2.48) BS01 A1AUF N/A N/A P31002 39235234
    459266 9c4m:G (2.48) BS02 IMP N/A N/A P31002 39235234
    459267 9c4m:G (2.48) BS03 A1AUF N/A N/A P31002 39235234
    459268 9c4m:H (2.48) BS01 A1AUF N/A N/A P31002 39235234
    459269 9c4m:H (2.48) BS02 IMP N/A N/A P31002 39235234
    459270 9c4m:H (2.48) BS03 A1AUF N/A N/A P31002 39235234
    459271 9c4o:A (1.99) BS02 PQQ N/A GO:0009279 ... P76115 N/A
    459272 9c55:A (2.36) BS01 527 N/A N/A P17706 39177701
    459273 9c56:A (2.43) BS01 FRJ N/A N/A P17706 39177701
    459274 9c57:A (2.75) BS01 AGS N/A N/A Q9Y265 39088653
    459275 9c57:B (2.75) BS01 AGS N/A N/A Q9Y230 39088653
    459276 9c57:C (2.75) BS01 AGS N/A N/A Q9Y265 39088653
    459277 9c57:D (2.75) BS01 AGS N/A N/A Q9Y230 39088653
    459278 9c57:E (2.75) BS01 AGS N/A N/A Q9Y265 39088653
    459279 9c57:F (2.75) BS01 AGS N/A N/A Q9Y230 39088653
    459280 9c57:G (2.75) BS01 AGS N/A N/A Q96L91 39088653
    459281 9c57:L (2.75) BS01 ATP N/A N/A O96019 39088653
    459282 9c5e:A (-1.00) BS03 4LJ N/A N/A Q7KTX7 39078678
    459283 9c61:A (2.6) BS01 A1AUU N/A N/A Q17RV3 N/A
    459284 9c61:B (2.6) BS01 A1AUU N/A N/A Q17RV3 N/A
    459285 9c62:A (5.28) BS01 ADP N/A N/A Q9Y265 39088653
    459286 9c62:B (5.28) BS01 ADP N/A N/A Q9Y230 39088653
    459287 9c62:C (5.28) BS01 ADP N/A N/A Q9Y265 39088653
    459288 9c62:D (5.28) BS01 ADP N/A N/A Q9Y230 39088653
    459289 9c62:E (5.28) BS01 ADP N/A N/A Q9Y265 39088653
    459290 9c62:F (5.28) BS01 ADP N/A N/A Q9Y230 39088653
    459291 9c6n:J (3.29) BS01 ATP N/A N/A P60709 39088653
    459292 9c6n:L (3.29) BS01 ATP N/A N/A O96019 39088653
    459293 9c6p:A (1.663) BS01 A1AUT N/A N/A P00811 N/A
    459294 9c6p:B (1.663) BS01 A1AUT N/A N/A P00811 N/A
    459295 9c81:A (1.7) BS01 A1AU0 N/A N/A P00811 N/A
    459296 9c81:B (1.7) BS01 A1AU0 N/A N/A P00811 N/A
    459297 9c83:A (2.9) BS01 A1AUZ N/A N/A P00811 N/A
    459298 9c83:B (2.9) BS01 A1AUZ N/A N/A P00811 N/A
    459299 9c84:A (1.7) BS01 A1AU1 N/A N/A P00811 N/A
    459300 9c84:B (1.7) BS01 A1AU1 N/A N/A P00811 N/A
    459301 9c8j:A (1.55) BS01 A1AU5 N/A N/A P00811 N/A
    459302 9c8j:B (1.55) BS01 A1AU5 N/A N/A P00811 N/A
    459303 9c8s:A (2.37) BS01 WTA N/A GO:0003987 ... J9VFT1 N/A
    459304 9c8s:B (2.37) BS01 WTA N/A GO:0003987 ... J9VFT1 N/A
    459305 9c8s:C (2.37) BS01 WTA N/A GO:0003987 ... J9VFT1 N/A
    459306 9c8v:B (3.39) BS01 SF4 N/A N/A P49643 N/A
    459307 9c9m:A (2.01) BS07 DLU N/A N/A P12497 39066328
    459308 9c9m:I (2.01) BS07 DLU N/A N/A P12497 39066328
    459309 9c9v:A (2.63) BS01 A1AVK N/A N/A L7R9I1 39231272
    459310 9c9v:B (2.63) BS01 A1AVK N/A N/A L7R9I1 39231272
    459311 9c9v:C (2.63) BS01 A1AVK N/A N/A L7R9I1 39231272
    459312 9c9v:D (2.63) BS01 A1AVK N/A N/A L7R9I1 39231272
    459313 9c9v:E (2.63) BS01 A1AVK N/A N/A L7R9I1 39231272
    459314 9c9v:F (2.63) BS01 A1AVK N/A N/A L7R9I1 39231272
    459315 9cbf:A (2.26) BS01 A1AVR N/A N/A F1QCV2 N/A
    459316 9cbg:A (2.6) BS01 A1AVN N/A N/A F1QCV2 N/A
    459317 9cbh:A (2.8) BS01 A1AVM N/A N/A F1QCV2 N/A
    459318 9cbi:A (2.5) BS01 A1AVQ N/A N/A F1QCV2 N/A
    459319 9cbj:A (2.48) BS01 A1AVP N/A N/A F1QCV2 N/A
    459320 9cbk:A (1.46) BS01 A1AVM N/A N/A A7YT55 N/A
    459321 9cbk:B (1.46) BS01 A1AVM N/A N/A A7YT55 N/A
    459322 9cbl:R (2.8) BS01 ALE N/A N/A P00720
    P08913    		 39218975
    459323 9cbm:R (3.2) BS01 CZX N/A N/A P00720
    P08913    		 39218975
    459324 9cbt:A (1.95) BS02 5IA N/A N/A Q9NTG7 N/A
    459325 9cbt:A (1.95) BS03 5I7 N/A N/A Q9NTG7 N/A
    459326 9cbt:B (1.95) BS01 5IA N/A N/A Q9NTG7 N/A
    459327 9cbt:B (1.95) BS03 5I7 N/A N/A Q9NTG7 N/A
    459328 9cc0:A (3.31) BS02 ATP N/A N/A P36776 38979310
    459329 9cc0:B (3.31) BS01 ATP N/A N/A P36776 38979310
    459330 9cc0:C (3.31) BS02 ATP N/A N/A P36776 38979310
    459331 9cc0:D (3.31) BS01 ATP N/A N/A P36776 38979310
    459332 9cc0:D (3.31) BS02 ATP N/A N/A P36776 38979310
    459333 9cc0:E (3.31) BS02 ADP N/A N/A P36776 38979310
    459334 9cc0:F (3.31) BS01 ADP N/A N/A P36776 38979310
    459335 9cc3:B (3.23) BS01 ADP N/A N/A P36776 38979310
    459336 9cc3:C (3.23) BS01 ADP N/A N/A P36776 38979310
    459337 9cc3:D (3.23) BS01 ADP N/A N/A P36776 38979310
    459338 9cc3:E (3.23) BS01 ADP N/A N/A P36776 38979310
    459339 9cc8:A (2.66) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    459340 9cc8:B (2.66) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    459341 9cc8:C (2.66) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    459342 9cc8:D (2.66) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    459343 9cc8:E (2.66) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    459344 9cc8:F (2.66) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    459345 9cc9:A (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    459346 9cc9:B (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    459347 9cc9:C (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    459348 9cc9:D (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    459349 9cc9:E (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    459350 9cc9:F (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    459351 9cc9:G (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    459352 9cc9:H (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    459353 9cc9:I (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    459354 9cc9:J (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    459355 9cc9:K (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    459356 9cc9:L (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    459357 9cd5:A (2.939) BS01 A1AV2 N/A N/A P11362 39258897
    459358 9cd5:B (2.939) BS01 A1AV2 N/A N/A P11362 39258897
    459359 9cd7:A (2.53) BS01 A1AV2 N/A N/A P22607 39258897
    459360 9cd7:B (2.53) BS01 A1AV2 N/A N/A P22607 39258897
    459361 9cd7:C (2.53) BS01 A1AV2 N/A N/A P22607 39258897
    459362 9ce4:A (1.31) BS01 A1AV4 N/A N/A O14757 39231262
    459363 9cg5:K (2.59) BS02 IAS N/A N/A C3SR57 39222680
    459364 9cg6:K (2.61) BS02 IAS N/A N/A C3SR57 39222680
    459365 9cg7:K (2.75) BS02 IAS N/A N/A C3SR57 39222680
    459366 9cgl:A (3.1) BS01 A1AWE N/A N/A Q9ZGI2 N/A
    459367 9cgl:B (3.1) BS01 A1AWE N/A N/A Q9ZGI2 N/A
    459368 9cgn:A (2.8) BS01 A1AWF N/A N/A Q9ZGI2 N/A
    459369 9cgn:B (2.8) BS01 A1AWF N/A N/A Q9ZGI2 N/A
    459370 9cgt:A (2.5) BS01 Z9E 2.4.1.19 GO:0003824 ... P30920 9738912
    459371 9cgt:A (2.5) BS02 4SG 2.4.1.19 GO:0003824 ... P30920 9738912
    459372 9cgt:A (2.5) BS03 GLC 2.4.1.19 GO:0003824 ... P30920 9738912
    459373 9cgt:A (2.5) BS04 4SG 2.4.1.19 GO:0003824 ... P30920 9738912
    459374 9chw:A (2.16) BS03 DZ4 N/A N/A Q9Y253 39259676
    459375 9ci9:A (2.09) BS03 0KX N/A N/A Q9Y253 39259676
    459376 9cia:m (3.39) BS03 CLR N/A N/A A0A075B6X2 N/A
    459377 9cih:A (2.15) BS03 0KX N/A N/A Q9Y253 39259676
    459378 9cii:A (1.85) BS01 THP N/A N/A Q5HHM4 N/A
    459379 9cij:A (1.9) BS01 THP N/A N/A Q5HHM4 N/A
    459380 9cik:A (1.95) BS01 THP N/A N/A Q5HHM4 N/A
    459381 9cil:A (2.0) BS01 THP N/A N/A Q5HHM4 N/A
    459382 9ciq:A (2.8) BS03 A1ANT N/A N/A Q9Y253 39259676
    459383 9ciw:A (2.4) BS01 A1AWU N/A N/A A0A068EGP0 39197447
    459384 9ciw:D (2.4) BS01 A1AWU N/A N/A A0A068EGP0 39197447
    459385 9cj0:A (1.3) BS01 EP1 N/A N/A N/A N/A
    459386 9cj7:A (3.0) BS01 MAN N/A N/A P08669 39243373
    459387 9cj7:B (3.0) BS01 MAN N/A N/A P08669 39243373
    459388 9cj7:C (3.0) BS01 MAN N/A N/A P08669 39243373
    459389 9cj7:L (3.0) BS01 BMA N/A N/A N/A 39243373
    459390 9cj7:L (3.0) BS02 FUC N/A N/A N/A 39243373
    459391 9cj9:A (2.98) BS03 DZ4 N/A N/A Q9Y253 39259676
    459392 9ck0:A (2.6) BS02 EDK N/A N/A P37231 N/A
    459393 9ck8:A (3.04) BS01 FUC N/A N/A P08669 39243373
    459394 9ck8:C (3.04) BS01 FUC N/A N/A P08669 39243373
    459395 9ck8:b (3.04) BS01 BMA N/A N/A P08669 39243373
    459396 9ckv:A (3.19) BS01 MAN N/A N/A P08648 N/A
    459397 9ckv:A (3.19) BS02 MAN N/A N/A P08648 N/A
    459398 9cly:A (2.16) BS01 NDP N/A N/A Q8E0R2 N/A
    459399 9cly:B (2.16) BS01 NDP N/A N/A Q8E0R2 N/A
    459400 9cmi:A (2.83) BS01 AV0 N/A N/A O14493 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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