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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    459001 9bjy:A (1.58) BS01 TMO N/A N/A Q9HUA0 N/A
    459002 9bk2:A (1.85) BS01 A1AQ0 N/A GO:0004459 ... P00338 38925013
    459003 9bk2:D (1.85) BS01 A1AQ0 N/A GO:0004459 ... P00338 38925013
    459004 9bk3:D (2.4) BS01 A1AR0 N/A GO:0004459 ... P00338 38925013
    459005 9bk4:A (2.08) BS01 PYR N/A N/A A0A069Q0R8 N/A
    459006 9bk4:B (2.08) BS01 PYR N/A N/A A0A069Q0R8 N/A
    459007 9bk8:A (1.67) BS01 2KT N/A N/A A0A069Q0R8 N/A
    459008 9bkm:A (2.08) BS01 FMN N/A GO:0004151 ... Q02127 38889244
    459009 9bkm:A (2.08) BS02 A1AQM N/A GO:0004151 ... Q02127 38889244
    459010 9bkn:A (1.3) BS01 FMN N/A GO:0004151 ... Q02127 38889244
    459011 9bkn:A (1.3) BS02 A1AQK N/A GO:0004151 ... Q02127 38889244
    459012 9bko:A (1.44) BS01 FMN N/A GO:0004151 ... Q02127 38889244
    459013 9bko:A (1.44) BS02 A1AQL N/A GO:0004151 ... Q02127 38889244
    459014 9bkq:A (2.1) BS01 A1AQN N/A N/A A0A068EGP0 39197447
    459015 9bkq:D (2.1) BS01 A1AQN N/A N/A A0A068EGP0 39197447
    459016 9bkr:A (1.4) BS01 ATP N/A N/A Q14669 N/A
    459017 9bks:A (1.17) BS01 ADP N/A N/A Q14669 N/A
    459018 9bkz:A (2.35) BS01 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    459019 9bkz:A (2.35) BS02 COA 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    459020 9bkz:B (2.35) BS01 COA 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    459021 9bkz:B (2.35) BS02 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    459022 9blg:A (2.06) BS01 A1AQ1 3.1.3.48 N/A Q06124 37269335
    459023 9blg:B (2.06) BS01 A1AQ1 3.1.3.48 N/A Q06124 37269335
    459024 9bn8:A (1.35) BS01 UMA 6.3.2.9 GO:0005515 ... P14900 N/A
    459025 9bn8:A (1.35) BS02 A1AQS 6.3.2.9 GO:0005515 ... P14900 N/A
    459026 9bn9:A (1.23) BS01 UMA 6.3.2.9 GO:0005515 ... P14900 N/A
    459027 9bn9:A (1.23) BS02 A1AQS 6.3.2.9 GO:0005515 ... P14900 N/A
    459028 9bn9:A (1.23) BS03 A1AQS 6.3.2.9 GO:0005515 ... P14900 N/A
    459029 9bnj:A (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    459030 9bnj:A (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    459031 9bnj:A (1.51) BS03 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    459032 9bnj:B (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    459033 9bnj:B (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    459034 9bnj:C (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    459035 9bnj:C (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    459036 9bnj:D (1.51) BS01 BZI 4.1.99.1 GO:0006569 ... P28796 N/A
    459037 9bnj:D (1.51) BS02 0JO 4.1.99.1 GO:0006569 ... P28796 N/A
    459038 9bnq:A (1.09) BS01 A1AQU N/A GO:0001516 ... P14174 38977403
    459039 9bnq:B (1.09) BS01 A1AQU N/A GO:0001516 ... P14174 38977403
    459040 9bnq:C (1.09) BS01 A1AQU N/A GO:0001516 ... P14174 38977403
    459041 9bnr:A (1.53) BS01 A1AQT N/A GO:0001516 ... P14174 38977403
    459042 9bnr:B (1.53) BS01 A1AQT N/A GO:0001516 ... P14174 38977403
    459043 9bnr:C (1.53) BS01 A1AQT N/A GO:0001516 ... P14174 38977403
    459044 9boh:A (2.0) BS01 A1AQW N/A N/A Q5SI56 39148791
    459045 9boh:A (2.0) BS02 FFO N/A N/A Q5SI56 39148791
    459046 9boh:B (2.0) BS01 A1AQW N/A N/A Q5SI56 39148791
    459047 9boh:B (2.0) BS02 FFO N/A N/A Q5SI56 39148791
    459048 9bol:C (1.99) BS01 A1ARP ? N/A P40337 N/A
    459049 9bol:F (1.99) BS01 A1ARP ? N/A P40337 N/A
    459050 9boo:A (1.5) BS01 YDL N/A N/A K9N638 39211604
    459051 9boq:A (3.33) BS01 ADP N/A N/A P55072 39122922
    459052 9boq:A (3.33) BS02 ADP N/A N/A P55072 39122922
    459053 9boq:A (3.33) BS03 XKM N/A N/A P55072 39122922
    459054 9boq:B (3.33) BS01 ADP N/A N/A P55072 39122922
    459055 9boq:B (3.33) BS02 ADP N/A N/A P55072 39122922
    459056 9boq:B (3.33) BS03 XKM N/A N/A P55072 39122922
    459057 9boq:C (3.33) BS01 ADP N/A N/A P55072 39122922
    459058 9boq:C (3.33) BS02 ADP N/A N/A P55072 39122922
    459059 9boq:C (3.33) BS03 XKM N/A N/A P55072 39122922
    459060 9boq:D (3.33) BS01 ADP N/A N/A P55072 39122922
    459061 9boq:D (3.33) BS02 ADP N/A N/A P55072 39122922
    459062 9boq:D (3.33) BS03 XKM N/A N/A P55072 39122922
    459063 9boq:E (3.33) BS01 ADP N/A N/A P55072 39122922
    459064 9boq:E (3.33) BS02 ADP N/A N/A P55072 39122922
    459065 9boq:E (3.33) BS03 XKM N/A N/A P55072 39122922
    459066 9boq:F (3.33) BS01 ADP N/A N/A P55072 39122922
    459067 9boq:F (3.33) BS02 ADP N/A N/A P55072 39122922
    459068 9boq:F (3.33) BS03 XKM N/A N/A P55072 39122922
    459069 9boq:G (3.33) BS01 ADP N/A N/A P55072 39122922
    459070 9boq:G (3.33) BS02 ADP N/A N/A P55072 39122922
    459071 9boq:G (3.33) BS03 XKM N/A N/A P55072 39122922
    459072 9boq:H (3.33) BS01 ADP N/A N/A P55072 39122922
    459073 9boq:H (3.33) BS02 ADP N/A N/A P55072 39122922
    459074 9boq:H (3.33) BS03 XKM N/A N/A P55072 39122922
    459075 9boq:I (3.33) BS01 ADP N/A N/A P55072 39122922
    459076 9boq:I (3.33) BS02 ADP N/A N/A P55072 39122922
    459077 9boq:I (3.33) BS03 XKM N/A N/A P55072 39122922
    459078 9boq:J (3.33) BS01 ADP N/A N/A P55072 39122922
    459079 9boq:J (3.33) BS02 ADP N/A N/A P55072 39122922
    459080 9boq:J (3.33) BS03 XKM N/A N/A P55072 39122922
    459081 9boq:K (3.33) BS01 ADP N/A N/A P55072 39122922
    459082 9boq:K (3.33) BS02 ADP N/A N/A P55072 39122922
    459083 9boq:K (3.33) BS03 XKM N/A N/A P55072 39122922
    459084 9boq:L (3.33) BS01 ADP N/A N/A P55072 39122922
    459085 9boq:L (3.33) BS02 ADP N/A N/A P55072 39122922
    459086 9boq:L (3.33) BS03 XKM N/A N/A P55072 39122922
    459087 9bow:A (1.8) BS01 SER N/A N/A Q5SI56 39148791
    459088 9bow:A (1.8) BS02 KOU N/A N/A Q5SI56 39148791
    459089 9bow:A (1.8) BS03 FFO N/A N/A Q5SI56 39148791
    459090 9bow:B (1.8) BS01 SER N/A N/A Q5SI56 39148791
    459091 9bow:B (1.8) BS02 KOU N/A N/A Q5SI56 39148791
    459092 9bow:B (1.8) BS03 FFO N/A N/A Q5SI56 39148791
    459093 9box:A (2.1) BS01 A1AQW N/A N/A P34897 39148791
    459094 9box:A (2.1) BS02 FFO N/A N/A P34897 39148791
    459095 9box:A (2.1) BS03 A1AQW N/A N/A P34897 39148791
    459096 9box:A (2.1) BS04 FFO N/A N/A P34897 39148791
    459097 9box:B (2.1) BS01 A1AQW N/A N/A P34897 39148791
    459098 9box:B (2.1) BS02 FFO N/A N/A P34897 39148791
    459099 9box:B (2.1) BS03 A1AQW N/A N/A P34897 39148791
    459100 9box:B (2.1) BS04 FFO N/A N/A P34897 39148791
    459101 9box:C (2.1) BS01 A1AQW N/A N/A P34897 39148791
    459102 9box:C (2.1) BS02 FFO N/A N/A P34897 39148791
    459103 9box:C (2.1) BS03 A1AQW N/A N/A P34897 39148791
    459104 9box:C (2.1) BS04 FFO N/A N/A P34897 39148791
    459105 9box:D (2.1) BS01 A1AQW N/A N/A P34897 39148791
    459106 9box:D (2.1) BS02 FFO N/A N/A P34897 39148791
    459107 9box:D (2.1) BS03 A1AQW N/A N/A P34897 39148791
    459108 9box:D (2.1) BS04 FFO N/A N/A P34897 39148791
    459109 9bp6:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    459110 9bp6:B (3.1) BS01 G2P ? GO:0000226 ... P07437 N/A
    459111 9bp6:I (3.1) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    459112 9bp6:Q (3.1) BS01 G2P ? GO:0000226 ... P07437 N/A
    459113 9bp9:A (3.21) BS01 WCN N/A N/A O75417 39143110
    459114 9bp9:C (3.21) BS01 WCN N/A N/A O75417 39143110
    459115 9bpa:A (3.21) BS01 WCN N/A N/A O75417 39143110
    459116 9bpa:C (3.21) BS01 WCN N/A N/A O75417 39143110
    459117 9bpa:E (3.21) BS01 WCN N/A N/A O75417 39143110
    459118 9bpa:G (3.21) BS01 WCN N/A N/A O75417 39143110
    459119 9bpe:A (2.0) BS01 FFO N/A N/A Q5SI56 39148791
    459120 9bpe:B (2.0) BS01 FFO N/A N/A Q5SI56 39148791
    459121 9bpf:A (2.0) BS01 YDL N/A N/A P0DTD1 39211604
    459122 9bpf:B (2.0) BS01 YDL N/A N/A P0DTD1 39211604
    459123 9bqe:A (1.98) BS01 TV3 N/A N/A P03372 N/A
    459124 9bqe:B (1.98) BS01 TV3 N/A N/A P03372 N/A
    459125 9bqj:D (3.3) BS01 A1AQ2 N/A N/A P42866 39220695
    459126 9br7:A (2.08) BS01 A1ATL N/A N/A Q9HAC7 38915184
    459127 9br7:C (2.08) BS01 A1ATL N/A N/A Q9HAC7 38915184
    459128 9br7:D (2.08) BS01 A1ATL N/A N/A Q9HAC7 38915184
    459129 9br7:D (2.08) BS02 A1ATL N/A N/A Q9HAC7 38915184
    459130 9brd:A (3.5) BS01 ADP N/A GO:0000221 ... D4A133 38900912
    459131 9brd:a (3.5) BS01 BMA N/A GO:0000220 ... P25286 38900912
    459132 9brd:a (3.5) BS02 MAN N/A GO:0000220 ... P25286 38900912
    459133 9brd:a (3.5) BS03 GLC N/A GO:0000220 ... P25286 38900912
    459134 9brd:a (3.5) BS04 GLC N/A GO:0000220 ... P25286 38900912
    459135 9brd:a (3.5) BS05 WJP N/A GO:0000220 ... P25286 38900912
    459136 9brd:a (3.5) BS06 LP3 N/A GO:0000220 ... P25286 38900912
    459137 9brd:f (3.5) BS01 LP3 N/A N/A A0A8J8YMT9 38900912
    459138 9brd:h (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    459139 9brd:i (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    459140 9brd:i (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    459141 9brd:i (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    459142 9brd:j (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    459143 9brd:j (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    459144 9brd:k (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    459145 9brd:k (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    459146 9brd:l (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    459147 9brd:l (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    459148 9brd:l (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    459149 9brd:m (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    459150 9brd:m (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    459151 9brd:m (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    459152 9brd:n (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    459153 9brd:n (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    459154 9brd:n (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    459155 9brd:n (3.5) BS04 CLR N/A GO:0000220 ... P63081 38900912
    459156 9brd:o (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    459157 9brd:o (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    459158 9brd:o (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    459159 9brd:o (3.5) BS04 CLR N/A GO:0000220 ... P63081 38900912
    459160 9brv:A (2.6) BS01 A1ASK N/A N/A P0DTD1 39140055
    459161 9brv:A (2.6) BS03 A1ASK N/A N/A P0DTD1 39140055
    459162 9brv:B (2.6) BS01 A1ASK N/A N/A P0DTD1 39140055
    459163 9brv:B (2.6) BS02 A1ASK N/A N/A P0DTD1 39140055
    459164 9brw:A (2.5) BS01 A1ARL N/A N/A P0DTC1 39140055
    459165 9brw:B (2.5) BS01 A1ARL N/A N/A P0DTC1 39140055
    459166 9brw:C (2.5) BS01 A1ARL N/A N/A P0DTC1 39140055
    459167 9brw:D (2.5) BS01 A1ARL N/A N/A P0DTC1 39140055
    459168 9brx:AA (1.8) BS01 A1ASL N/A N/A P0DTC1 39140055
    459169 9bry:c (3.6) BS01 BMA N/A N/A Q9R1Q9 38838737
    459170 9bs3:A (2.69) BS04 AMP N/A N/A P18858 39159820
    459171 9bs3:E (2.69) BS04 AMP N/A N/A P18858 39159820
    459172 9bs4:A (2.4) BS04 AMP N/A N/A P18858 39159820
    459173 9bs4:E (2.4) BS04 AMP N/A N/A P18858 39159820
    459174 9bts:A (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    459175 9bts:B (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    459176 9bts:C (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    459177 9bts:D (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    459178 9bts:E (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    459179 9bts:F (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    459180 9bts:G (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    459181 9bts:H (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    459182 9bts:a (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    459183 9bts:b (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    459184 9bts:c (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    459185 9bts:d (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    459186 9bts:e (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    459187 9bts:f (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    459188 9bts:g (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    459189 9bts:h (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    459190 9bu1:A (1.75) BS01 A1ASN N/A N/A P03372 N/A
    459191 9bu1:B (1.75) BS01 A1ASN N/A N/A P03372 N/A
    459192 9bul:A (2.1) BS02 NIO N/A GO:0003677 ... Q9X1T8 N/A
    459193 9bul:A (2.1) BS03 PRO N/A GO:0003677 ... Q9X1T8 N/A
    459194 9bwt:A (2.5) BS01 ATP N/A N/A J3QSS1 39143061
    459195 9bwt:A (2.5) BS02 HCZ N/A N/A J3QSS1 39143061
    459196 9bwt:B (2.5) BS01 ATP N/A N/A J3QSS1 39143061
    459197 9bzq:A (1.47) BS01 NXL 3.5.2.6 N/A A0A0H3LUA9 N/A
    459198 9bzr:A (1.4) BS01 TEM 3.5.2.6 N/A A0A0H3LUA9 N/A
    459199 9c0b:H (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    459200 9c0b:I (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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