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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    458401 9b22:A (1.3) BS05 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    458402 9b22:B (1.3) BS01 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    458403 9b22:B (1.3) BS04 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    458404 9b22:B (1.3) BS05 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    458405 9b27:A (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458406 9b27:B (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458407 9b27:C (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458408 9b27:D (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458409 9b27:E (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458410 9b27:F (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458411 9b2h:A (1.32) BS01 A1AIH N/A GO:0004190 ... Q5RZ08 38973505
    458412 9b2h:B (1.32) BS01 A1AIH N/A GO:0004190 ... Q5RZ08 38973505
    458413 9b35:A (3.4) BS01 GLU ? N/A P42260 38778115
    458414 9b35:B (3.4) BS01 GLU ? N/A P42260 38778115
    458415 9b35:C (3.4) BS01 GLU ? N/A P42260 38778115
    458416 9b35:D (3.4) BS01 GLU ? N/A P42260 38778115
    458417 9b36:A (4.29) BS01 GAL ? N/A P42260 38778115
    458418 9b36:A (4.29) BS02 2J9 ? N/A P42260 38778115
    458419 9b36:A (4.29) BS03 GLU ? N/A P42260 38778115
    458420 9b36:A (4.29) BS04 CLR ? N/A P42260 38778115
    458421 9b36:A (4.29) BS05 CLR ? N/A P42260 38778115
    458422 9b36:A (4.29) BS06 2J9 ? N/A P42260 38778115
    458423 9b36:B (4.29) BS01 2J9 ? N/A P42260 38778115
    458424 9b36:B (4.29) BS02 GLU ? N/A P42260 38778115
    458425 9b36:B (4.29) BS03 2J9 ? N/A P42260 38778115
    458426 9b36:C (4.29) BS01 MAN ? N/A P42260 38778115
    458427 9b36:C (4.29) BS02 2J9 ? N/A P42260 38778115
    458428 9b36:C (4.29) BS03 CLR ? N/A P42260 38778115
    458429 9b36:C (4.29) BS04 2J9 ? N/A P42260 38778115
    458430 9b36:C (4.29) BS05 GLU ? N/A P42260 38778115
    458431 9b36:C (4.29) BS06 CLR ? N/A P42260 38778115
    458432 9b36:D (4.29) BS01 2J9 ? N/A P42260 38778115
    458433 9b36:D (4.29) BS02 2J9 ? N/A P42260 38778115
    458434 9b36:D (4.29) BS03 GLU ? N/A P42260 38778115
    458435 9b36:E (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    458436 9b36:F (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    458437 9b36:G (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    458438 9b36:H (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    458439 9b37:A (6.66) BS01 2J9 ? N/A P42260 38778115
    458440 9b37:A (6.66) BS02 GLU ? N/A P42260 38778115
    458441 9b37:A (6.66) BS03 CLR ? N/A P42260 38778115
    458442 9b37:A (6.66) BS04 CLR ? N/A P42260 38778115
    458443 9b37:A (6.66) BS05 2J9 ? N/A P42260 38778115
    458444 9b37:B (6.66) BS01 2J9 ? N/A P42260 38778115
    458445 9b37:B (6.66) BS02 GLU ? N/A P42260 38778115
    458446 9b37:B (6.66) BS03 2J9 ? N/A P42260 38778115
    458447 9b37:C (6.66) BS01 2J9 ? N/A P42260 38778115
    458448 9b37:C (6.66) BS02 CLR ? N/A P42260 38778115
    458449 9b37:C (6.66) BS03 2J9 ? N/A P42260 38778115
    458450 9b37:C (6.66) BS04 GLU ? N/A P42260 38778115
    458451 9b37:C (6.66) BS05 CLR ? N/A P42260 38778115
    458452 9b37:D (6.66) BS01 2J9 ? N/A P42260 38778115
    458453 9b37:D (6.66) BS02 CLR ? N/A P42260 38778115
    458454 9b37:D (6.66) BS03 2J9 ? N/A P42260 38778115
    458455 9b37:D (6.66) BS04 GLU ? N/A P42260 38778115
    458456 9b37:F (6.66) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    458457 9b38:A (3.36) BS01 GLU ? N/A P42260 38778115
    458458 9b38:A (3.36) BS02 MAN ? N/A P42260 38778115
    458459 9b38:B (3.36) BS01 GLU ? N/A P42260 38778115
    458460 9b38:C (3.36) BS01 GLU ? N/A P42260 38778115
    458461 9b38:C (3.36) BS02 MAN ? N/A P42260 38778115
    458462 9b38:D (3.36) BS01 GLU ? N/A P42260 38778115
    458463 9b39:A (3.84) BS01 MAN ? N/A P42260 38778115
    458464 9b39:A (3.84) BS02 GLU ? N/A P42260 38778115
    458465 9b39:B (3.84) BS01 GLU ? N/A P42260 38778115
    458466 9b39:C (3.84) BS01 GLU ? N/A P42260 38778115
    458467 9b39:D (3.84) BS01 GLU ? N/A P42260 38778115
    458468 9b3b:A (1.62) BS01 A1AIM N/A N/A Q9NUW8 N/A
    458469 9b3b:B (1.62) BS01 A1AIM N/A N/A Q9NUW8 N/A
    458470 9b3d:A (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458471 9b3d:B (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458472 9b3d:C (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458473 9b3d:D (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458474 9b3d:E (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458475 9b3d:F (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458476 9b3q:A (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    458477 9b3q:D (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    458478 9b3q:E (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    458479 9b3r:A (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    458480 9b3r:D (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    458481 9b3r:E (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    458482 9b4e:A (2.7) BS01 P5S N/A N/A P48651 39208797
    458483 9b4e:A (2.7) BS02 P5S N/A N/A P48651 39208797
    458484 9b4e:A (2.7) BS03 LBN N/A N/A P48651 39208797
    458485 9b4e:A (2.7) BS04 A1AIS N/A N/A P48651 39208797
    458486 9b4e:A (2.7) BS05 6OU N/A N/A P48651 39208797
    458487 9b4e:A (2.7) BS07 LBN N/A N/A P48651 39208797
    458488 9b4e:A (2.7) BS08 LBN N/A N/A P48651 39208797
    458489 9b4e:B (2.7) BS01 LBN N/A N/A P48651 39208797
    458490 9b4e:B (2.7) BS02 LBN N/A N/A P48651 39208797
    458491 9b4e:B (2.7) BS03 P5S N/A N/A P48651 39208797
    458492 9b4e:B (2.7) BS04 P5S N/A N/A P48651 39208797
    458493 9b4e:B (2.7) BS05 LBN N/A N/A P48651 39208797
    458494 9b4e:B (2.7) BS06 A1AIS N/A N/A P48651 39208797
    458495 9b4e:B (2.7) BS07 6OU N/A N/A P48651 39208797
    458496 9b4g:A (2.87) BS01 P5S N/A N/A P48651 39208797
    458497 9b4g:A (2.87) BS02 P5S N/A N/A P48651 39208797
    458498 9b4g:A (2.87) BS03 LBN N/A N/A P48651 39208797
    458499 9b4g:A (2.87) BS04 A1AIS N/A N/A P48651 39208797
    458500 9b4g:A (2.87) BS05 6OU N/A N/A P48651 39208797
    458501 9b4g:A (2.87) BS07 A1AIT N/A N/A P48651 39208797
    458502 9b4g:A (2.87) BS08 LBN N/A N/A P48651 39208797
    458503 9b4g:A (2.87) BS09 LBN N/A N/A P48651 39208797
    458504 9b4g:B (2.87) BS01 LBN N/A N/A P48651 39208797
    458505 9b4g:B (2.87) BS02 LBN N/A N/A P48651 39208797
    458506 9b4g:B (2.87) BS03 P5S N/A N/A P48651 39208797
    458507 9b4g:B (2.87) BS04 P5S N/A N/A P48651 39208797
    458508 9b4g:B (2.87) BS05 LBN N/A N/A P48651 39208797
    458509 9b4g:B (2.87) BS06 A1AIS N/A N/A P48651 39208797
    458510 9b4g:B (2.87) BS07 6OU N/A N/A P48651 39208797
    458511 9b4g:B (2.87) BS09 A1AIT N/A N/A P48651 39208797
    458512 9b4h:A (3.1) BS01 FUB ? N/A A8J9H7 38552624
    458513 9b4h:A (3.1) BS02 FUB ? N/A A8J9H7 38552624
    458514 9b4h:A (3.1) BS03 FUB ? N/A A8J9H7 38552624
    458515 9b4h:A (3.1) BS04 FUB ? N/A A8J9H7 38552624
    458516 9b4h:A (3.1) BS05 FUB ? N/A A8J9H7 38552624
    458517 9b4h:A (3.1) BS06 FUB ? N/A A8J9H7 38552624
    458518 9b4h:A (3.1) BS07 FUB ? N/A A8J9H7 38552624
    458519 9b4h:A (3.1) BS08 FUB ? N/A A8J9H7 38552624
    458520 9b4h:A (3.1) BS09 FUB ? N/A A8J9H7 38552624
    458521 9b4h:A (3.1) BS10 FUB ? N/A A8J9H7 38552624
    458522 9b4h:A (3.1) BS11 FUB ? N/A A8J9H7 38552624
    458523 9b4h:A (3.1) BS12 FUB ? N/A A8J9H7 38552624
    458524 9b4h:A (3.1) BS13 FUB ? N/A A8J9H7 38552624
    458525 9b4h:A (3.1) BS14 FUB ? N/A A8J9H7 38552624
    458526 9b4h:A (3.1) BS15 FUB ? N/A A8J9H7 38552624
    458527 9b4h:A (3.1) BS16 FUB ? N/A A8J9H7 38552624
    458528 9b4h:A (3.1) BS17 FUB ? N/A A8J9H7 38552624
    458529 9b4h:A (3.1) BS18 FUB ? N/A A8J9H7 38552624
    458530 9b4h:A (3.1) BS19 FUB ? N/A A8J9H7 38552624
    458531 9b4h:A (3.1) BS20 A1AIO ? N/A A8J9H7 38552624
    458532 9b4h:A (3.1) BS21 A1AIO ? N/A A8J9H7 38552624
    458533 9b4h:A (3.1) BS22 A1AIO ? N/A A8J9H7 38552624
    458534 9b4h:A (3.1) BS23 A1AIO ? N/A A8J9H7 38552624
    458535 9b4h:A (3.1) BS24 A1AIO ? N/A A8J9H7 38552624
    458536 9b4h:A (3.1) BS25 A1AIO ? N/A A8J9H7 38552624
    458537 9b4h:A (3.1) BS26 A1AIO ? N/A A8J9H7 38552624
    458538 9b4h:A (3.1) BS27 A1AIO ? N/A A8J9H7 38552624
    458539 9b4h:A (3.1) BS28 GLA ? N/A A8J9H7 38552624
    458540 9b4h:A (3.1) BS29 GLA ? N/A A8J9H7 38552624
    458541 9b4h:A (3.1) BS30 GLA ? N/A A8J9H7 38552624
    458542 9b4h:A (3.1) BS31 GLA ? N/A A8J9H7 38552624
    458543 9b4h:A (3.1) BS32 GLA ? N/A A8J9H7 38552624
    458544 9b4h:A (3.1) BS33 GLA ? N/A A8J9H7 38552624
    458545 9b4h:A (3.1) BS34 GLA ? N/A A8J9H7 38552624
    458546 9b4h:A (3.1) BS35 GLA ? N/A A8J9H7 38552624
    458547 9b4h:A (3.1) BS36 GLA ? N/A A8J9H7 38552624
    458548 9b4h:A (3.1) BS37 GLA ? N/A A8J9H7 38552624
    458549 9b4h:A (3.1) BS38 GLA ? N/A A8J9H7 38552624
    458550 9b4h:B (3.1) BS01 34V ? N/A A8J9H7 38552624
    458551 9b4h:B (3.1) BS02 FUB ? N/A A8J9H7 38552624
    458552 9b4h:B (3.1) BS03 FUB ? N/A A8J9H7 38552624
    458553 9b4h:B (3.1) BS04 FUB ? N/A A8J9H7 38552624
    458554 9b4h:B (3.1) BS05 FUB ? N/A A8J9H7 38552624
    458555 9b4h:B (3.1) BS06 FUB ? N/A A8J9H7 38552624
    458556 9b4h:B (3.1) BS07 FUB ? N/A A8J9H7 38552624
    458557 9b4h:B (3.1) BS08 FUB ? N/A A8J9H7 38552624
    458558 9b4h:B (3.1) BS09 FUB ? N/A A8J9H7 38552624
    458559 9b4h:B (3.1) BS10 FUB ? N/A A8J9H7 38552624
    458560 9b4h:B (3.1) BS11 FUB ? N/A A8J9H7 38552624
    458561 9b4h:B (3.1) BS12 FUB ? N/A A8J9H7 38552624
    458562 9b4h:B (3.1) BS13 FUB ? N/A A8J9H7 38552624
    458563 9b4h:B (3.1) BS14 FUB ? N/A A8J9H7 38552624
    458564 9b4h:B (3.1) BS15 FUB ? N/A A8J9H7 38552624
    458565 9b4h:B (3.1) BS16 FUB ? N/A A8J9H7 38552624
    458566 9b4h:B (3.1) BS17 FUB ? N/A A8J9H7 38552624
    458567 9b4h:B (3.1) BS18 FUB ? N/A A8J9H7 38552624
    458568 9b4h:B (3.1) BS19 FUB ? N/A A8J9H7 38552624
    458569 9b4h:B (3.1) BS20 FUB ? N/A A8J9H7 38552624
    458570 9b4h:B (3.1) BS21 FUB ? N/A A8J9H7 38552624
    458571 9b4h:B (3.1) BS22 A1AIO ? N/A A8J9H7 38552624
    458572 9b4h:B (3.1) BS23 A1AIO ? N/A A8J9H7 38552624
    458573 9b4h:B (3.1) BS24 A1AIO ? N/A A8J9H7 38552624
    458574 9b4h:B (3.1) BS25 A1AIO ? N/A A8J9H7 38552624
    458575 9b4h:B (3.1) BS26 A1AIO ? N/A A8J9H7 38552624
    458576 9b4h:B (3.1) BS27 A1AIO ? N/A A8J9H7 38552624
    458577 9b4h:B (3.1) BS28 A1AIO ? N/A A8J9H7 38552624
    458578 9b4h:B (3.1) BS29 A1AIO ? N/A A8J9H7 38552624
    458579 9b4h:B (3.1) BS30 GLA ? N/A A8J9H7 38552624
    458580 9b4h:B (3.1) BS31 GLA ? N/A A8J9H7 38552624
    458581 9b4h:B (3.1) BS32 GLA ? N/A A8J9H7 38552624
    458582 9b4h:B (3.1) BS33 GLA ? N/A A8J9H7 38552624
    458583 9b4h:B (3.1) BS34 GLA ? N/A A8J9H7 38552624
    458584 9b4h:B (3.1) BS35 GLA ? N/A A8J9H7 38552624
    458585 9b4h:B (3.1) BS36 GLA ? N/A A8J9H7 38552624
    458586 9b4h:B (3.1) BS37 GLA ? N/A A8J9H7 38552624
    458587 9b4h:B (3.1) BS38 GLA ? N/A A8J9H7 38552624
    458588 9b4h:B (3.1) BS39 GLA ? N/A A8J9H7 38552624
    458589 9b55:B (3.23) BS01 A1AIV ? N/A P0CH07 39143218
    458590 9b56:A (3.35) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    458591 9b56:B (3.35) BS01 A1AIV ? N/A P0CH07 39143218
    458592 9b57:B (3.37) BS01 A1AIV ? N/A P0CH07 39143218
    458593 9b58:A (3.39) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    458594 9b59:C (3.49) BS01 A1AIV 2.3.2.26 N/A Q9UTG2 39143218
    458595 9b5a:C (3.65) BS01 A1AIV 2.3.2.26 N/A Q9UTG2 39143218
    458596 9b5b:C (3.31) BS01 A1AIV 2.3.2.26 N/A Q9UTG2 39143218
    458597 9b5c:A (2.5) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    458598 9b5c:A (2.5) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    458599 9b5c:C (2.5) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    458600 9b5d:A (2.8) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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