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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    458201 9axf:Q (3.5) BS05 9IG ? GO:0004930 ... P41180 38632411
    458202 9axf:Q (3.5) BS06 Y01 ? GO:0004930 ... P41180 38632411
    458203 9axf:Q (3.5) BS07 CLR ? GO:0004930 ... P41180 38632411
    458204 9axf:Q (3.5) BS08 CLR ? GO:0004930 ... P41180 38632411
    458205 9axf:R (3.5) BS01 TCR ? GO:0004930 ... P41180 38632411
    458206 9axf:R (3.5) BS03 9IG ? GO:0004930 ... P41180 38632411
    458207 9axf:R (3.5) BS04 AV0 ? GO:0004930 ... P41180 38632411
    458208 9axf:R (3.5) BS05 Y01 ? GO:0004930 ... P41180 38632411
    458209 9axf:R (3.5) BS06 Y01 ? GO:0004930 ... P41180 38632411
    458210 9axf:R (3.5) BS07 CLR ? GO:0004930 ... P41180 38632411
    458211 9axh:A (2.81) BS01 A1AHE 2.7.12.2 GO:0004672 ... Q02750 38588399
    458212 9axh:A (2.81) BS02 ANP 2.7.12.2 GO:0004672 ... Q02750 38588399
    458213 9axh:B (2.81) BS01 A1AHE 2.7.12.2 GO:0004672 ... Q02750 38588399
    458214 9axh:B (2.81) BS02 ANP 2.7.12.2 GO:0004672 ... Q02750 38588399
    458215 9axh:C (2.81) BS01 ANP 2.7.11.1 GO:0004672 ... Q8IVT5 38588399
    458216 9axh:D (2.81) BS01 ANP 2.7.11.1 GO:0004672 ... Q8IVT5 38588399
    458217 9axh:D (2.81) BS02 ANP 2.7.11.1 GO:0004672 ... Q8IVT5 38588399
    458218 9axm:A (2.42) BS01 A1AHE 2.7.12.2 GO:0004672 ... Q02750 38588399
    458219 9axm:A (2.42) BS03 ANP 2.7.12.2 GO:0004672 ... Q02750 38588399
    458220 9axm:B (2.42) BS01 A1AHE 2.7.11.1 GO:0004672 ... P10398 38588399
    458221 9axm:B (2.42) BS03 ANP 2.7.11.1 GO:0004672 ... P10398 38588399
    458222 9axm:C (2.42) BS01 A1AHE 2.7.12.2 GO:0004672 ... Q02750 38588399
    458223 9axx:A (2.07) BS01 A1AHE 2.7.12.2 GO:0004672 ... Q02750 38588399
    458224 9axx:A (2.07) BS02 ANP 2.7.12.2 GO:0004672 ... Q02750 38588399
    458225 9axx:B (2.07) BS01 ANP 2.7.11.1 GO:0004672 ... P15056 38588399
    458226 9axx:C (2.07) BS01 A1AHE 2.7.12.2 GO:0004672 ... Q02750 38588399
    458227 9axx:C (2.07) BS02 ANP 2.7.12.2 GO:0004672 ... Q02750 38588399
    458228 9axy:A (3.6) BS01 ANP 2.7.11.1 GO:0004672 ... P15056 38588399
    458229 9axy:B (3.6) BS01 A1AHE 2.7.12.2 GO:0000165 ... Q02750 38588399
    458230 9axy:B (3.6) BS02 ANP 2.7.12.2 GO:0000165 ... Q02750 38588399
    458231 9ay7:A (2.41) BS01 ANP 2.7.11.1 GO:0004672 ... P04049 38588399
    458232 9ay7:B (2.41) BS01 A1AHE 2.7.12.2 GO:0000165 ... Q02750 38588399
    458233 9ay7:B (2.41) BS02 ANP 2.7.12.2 GO:0000165 ... Q02750 38588399
    458234 9aya:B (2.59) BS01 A1AHE 2.7.12.2 GO:0004672 ... Q02750 38588399
    458235 9aya:B (2.59) BS02 ANP 2.7.12.2 GO:0004672 ... Q02750 38588399
    458236 9aya:D (2.59) BS01 A1AHE 2.7.12.2 GO:0004672 ... Q02750 38588399
    458237 9aya:D (2.59) BS02 ANP 2.7.12.2 GO:0004672 ... Q02750 38588399
    458238 9ayf:Q (3.6) BS01 TCR ? GO:0004930 ... P41180 38632411
    458239 9ayf:Q (3.6) BS05 9IG ? GO:0004930 ... P41180 38632411
    458240 9ayf:Q (3.6) BS06 AV0 ? GO:0004930 ... P41180 38632411
    458241 9ayf:R (3.6) BS01 TCR ? GO:0004930 ... P41180 38632411
    458242 9ayf:R (3.6) BS04 AV0 ? GO:0004930 ... P41180 38632411
    458243 9ayf:R (3.6) BS05 9IG ? GO:0004930 ... P41180 38632411
    458244 9ayg:A (3.0) BS02 LPE ? GO:0005216 ... O95180 38605177
    458245 9ayg:A (3.0) BS03 Y01 ? GO:0005216 ... O95180 38605177
    458246 9ayg:A (3.0) BS04 JL3 ? GO:0005216 ... O95180 38605177
    458247 9ayg:A (3.0) BS05 Y01 ? GO:0005216 ... O95180 38605177
    458248 9ayg:A (3.0) BS06 JL3 ? GO:0005216 ... O95180 38605177
    458249 9ayg:A (3.0) BS07 JL3 ? GO:0005216 ... O95180 38605177
    458250 9ayg:A (3.0) BS08 JL3 ? GO:0005216 ... O95180 38605177
    458251 9ayg:A (3.0) BS09 Y01 ? GO:0005216 ... O95180 38605177
    458252 9ayg:A (3.0) BS10 Y01 ? GO:0005216 ... O95180 38605177
    458253 9ayh:A (3.1) BS01 A1AHH ? GO:0005216 ... O95180 38605177
    458254 9ayh:A (3.1) BS03 LPE ? GO:0005216 ... O95180 38605177
    458255 9ayh:A (3.1) BS04 Y01 ? GO:0005216 ... O95180 38605177
    458256 9ayh:A (3.1) BS05 JL3 ? GO:0005216 ... O95180 38605177
    458257 9ayh:A (3.1) BS06 Y01 ? GO:0005216 ... O95180 38605177
    458258 9ayh:A (3.1) BS07 JL3 ? GO:0005216 ... O95180 38605177
    458259 9ayh:A (3.1) BS08 JL3 ? GO:0005216 ... O95180 38605177
    458260 9ayh:A (3.1) BS09 Y01 ? GO:0005216 ... O95180 38605177
    458261 9ayh:A (3.1) BS10 Y01 ? GO:0005216 ... O95180 38605177
    458262 9ayj:A (3.2) BS01 A1AHI ? GO:0005216 ... O95180 38605177
    458263 9ayj:A (3.2) BS03 LPE ? GO:0005216 ... O95180 38605177
    458264 9ayj:A (3.2) BS04 Y01 ? GO:0005216 ... O95180 38605177
    458265 9ayj:A (3.2) BS05 JL3 ? GO:0005216 ... O95180 38605177
    458266 9ayj:A (3.2) BS06 Y01 ? GO:0005216 ... O95180 38605177
    458267 9ayj:A (3.2) BS07 JL3 ? GO:0005216 ... O95180 38605177
    458268 9ayj:A (3.2) BS08 JL3 ? GO:0005216 ... O95180 38605177
    458269 9ayj:A (3.2) BS09 JL3 ? GO:0005216 ... O95180 38605177
    458270 9ayj:A (3.2) BS10 Y01 ? GO:0005216 ... O95180 38605177
    458271 9ayj:A (3.2) BS11 Y01 ? GO:0005216 ... O95180 38605177
    458272 9ayk:A (3.0) BS01 A1AHJ ? GO:0005216 ... O95180 38605177
    458273 9ayk:A (3.0) BS03 LPE ? GO:0005216 ... O95180 38605177
    458274 9ayk:A (3.0) BS04 Y01 ? GO:0005216 ... O95180 38605177
    458275 9ayk:A (3.0) BS05 JL3 ? GO:0005216 ... O95180 38605177
    458276 9ayk:A (3.0) BS06 Y01 ? GO:0005216 ... O95180 38605177
    458277 9ayk:A (3.0) BS07 JL3 ? GO:0005216 ... O95180 38605177
    458278 9ayk:A (3.0) BS08 JL3 ? GO:0005216 ... O95180 38605177
    458279 9ayk:A (3.0) BS09 JL3 ? GO:0005216 ... O95180 38605177
    458280 9ayk:A (3.0) BS10 Y01 ? GO:0005216 ... O95180 38605177
    458281 9ayk:A (3.0) BS11 Y01 ? GO:0005216 ... O95180 38605177
    458282 9ayl:A (2.8) BS01 A1AHK ? GO:0005216 ... O95180 38605177
    458283 9ayl:A (2.8) BS03 LPE ? GO:0005216 ... O95180 38605177
    458284 9ayl:A (2.8) BS04 Y01 ? GO:0005216 ... O95180 38605177
    458285 9ayl:A (2.8) BS05 JL3 ? GO:0005216 ... O95180 38605177
    458286 9ayl:A (2.8) BS06 Y01 ? GO:0005216 ... O95180 38605177
    458287 9ayl:A (2.8) BS07 JL3 ? GO:0005216 ... O95180 38605177
    458288 9ayl:A (2.8) BS08 JL3 ? GO:0005216 ... O95180 38605177
    458289 9ayl:A (2.8) BS09 JL3 ? GO:0005216 ... O95180 38605177
    458290 9ayl:A (2.8) BS10 Y01 ? GO:0005216 ... O95180 38605177
    458291 9ayl:A (2.8) BS11 Y01 ? GO:0005216 ... O95180 38605177
    458292 9aym:A (3.29) BS01 A1AHN N/A N/A G0S273 38585770
    458293 9aym:B (3.29) BS01 A1AHN N/A N/A G0S273 38585770
    458294 9az4:A (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458295 9az4:B (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458296 9az4:C (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458297 9az4:D (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458298 9az4:E (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458299 9az4:F (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458300 9az7:A (2.0) BS01 CL ? GO:0006355 ... P16113 38595979
    458301 9aza:A (2.84) BS01 PLP N/A GO:0008483 ... A0A0A2J6G6 39001849
    458302 9azb:A (2.9) BS01 PLP N/A GO:0008483 ... A0A0A2J6G6 39001849
    458303 9azo:A (2.34) BS01 NAP N/A N/A Q93PS4 39222681
    458304 9azo:B (2.34) BS01 NAP N/A N/A Q93PS4 39222681
    458305 9azo:C (2.34) BS01 NAP N/A N/A Q93PS4 39222681
    458306 9azo:D (2.34) BS01 NAP N/A N/A Q93PS4 39222681
    458307 9azo:E (2.34) BS01 NAP N/A N/A Q93PS4 39222681
    458308 9azo:F (2.34) BS01 NAP N/A N/A Q93PS4 39222681
    458309 9azp:A (3.79) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458310 9azp:B (3.79) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458311 9azp:C (3.79) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458312 9azp:D (3.79) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458313 9azp:E (3.79) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458314 9azp:F (3.79) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458315 9azp:I (3.79) BS01 ATP 3.6.4.- GO:0000287 ... P68135 38843827
    458316 9azq:A (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458317 9azq:B (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458318 9azq:C (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458319 9azq:D (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458320 9azq:E (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458321 9azq:F (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458322 9azq:I (3.82) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458323 9azx:A (1.395) BS01 A1AH3 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 38646883
    458324 9azx:B (1.395) BS01 A1AH3 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 38646883
    458325 9azx:C (1.395) BS01 A1AH3 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 38646883
    458326 9b00:1d (2.8) BS02 SF4 N/A N/A P80373 39019034
    458327 9b00:2d (2.8) BS03 SF4 N/A N/A P80373 39019034
    458328 9b03:A (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458329 9b03:B (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458330 9b03:C (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458331 9b03:D (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458332 9b03:E (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458333 9b03:F (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458334 9b0c:A (1.66) BS01 827 N/A N/A Q70KE6 39207862
    458335 9b0c:A (1.66) BS02 PMP N/A N/A Q70KE6 39207862
    458336 9b0e:A (3.19) BS01 ADP N/A N/A G0S273 38585770
    458337 9b0e:A (3.19) BS02 A1AH4 N/A N/A G0S273 38585770
    458338 9b0e:B (3.19) BS01 ADP N/A N/A G0S273 38585770
    458339 9b0e:B (3.19) BS02 A1AH4 N/A N/A G0S273 38585770
    458340 9b0i:A (3.02) BS01 ADP N/A N/A G0S273 38585770
    458341 9b0i:A (3.02) BS02 A1AH4 N/A N/A G0S273 38585770
    458342 9b0i:B (3.02) BS01 ADP N/A N/A G0S273 38585770
    458343 9b0i:B (3.02) BS02 A1AH4 N/A N/A G0S273 38585770
    458344 9b0k:A (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458345 9b0k:B (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458346 9b0k:C (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458347 9b0k:D (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458348 9b0k:E (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458349 9b0k:F (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    458350 9b17:A (2.65) BS01 HEM N/A N/A P48775 39106326
    458351 9b17:A (2.65) BS02 A1AH9 N/A N/A P48775 39106326
    458352 9b17:A (2.65) BS03 ZIQ N/A N/A P48775 39106326
    458353 9b17:B (2.65) BS01 HEM N/A N/A P48775 39106326
    458354 9b17:B (2.65) BS02 A1AH9 N/A N/A P48775 39106326
    458355 9b17:B (2.65) BS03 ZIQ N/A N/A P48775 39106326
    458356 9b17:C (2.65) BS01 HEM N/A N/A P48775 39106326
    458357 9b17:C (2.65) BS02 A1AH9 N/A N/A P48775 39106326
    458358 9b17:C (2.65) BS03 ZIQ N/A N/A P48775 39106326
    458359 9b17:C (2.65) BS04 A1AH9 N/A N/A P48775 39106326
    458360 9b17:D (2.65) BS01 A1AH9 N/A N/A P48775 39106326
    458361 9b17:D (2.65) BS02 HEM N/A N/A P48775 39106326
    458362 9b17:D (2.65) BS03 A1AH9 N/A N/A P48775 39106326
    458363 9b17:D (2.65) BS04 ZIQ N/A N/A P48775 39106326
    458364 9b1g:A (2.7) BS01 A1AIK N/A N/A Q96S37 39245778
    458365 9b1h:A (2.9) BS01 A1AIL N/A N/A Q96S37 39245778
    458366 9b1i:A (3.7) BS01 A1AIJ N/A N/A Q96S37 39245778
    458367 9b1j:A (3.0) BS01 URC N/A N/A Q96S37 39245778
    458368 9b1k:A (3.3) BS01 URC N/A N/A Q96S37 39245778
    458369 9b1l:A (3.1) BS01 URC N/A N/A Q96S37 39245778
    458370 9b1m:A (3.0) BS01 VGL N/A N/A Q96S37 39245778
    458371 9b1n:A (3.1) BS01 VGL N/A N/A Q96S37 39245778
    458372 9b1o:A (3.1) BS01 VGL N/A N/A Q96S37 39245778
    458373 9b1q:A (2.624) BS01 HEM N/A N/A P48775 39106326
    458374 9b1q:A (2.624) BS02 A1AH8 N/A N/A P48775 39106326
    458375 9b1q:A (2.624) BS03 ZIQ N/A N/A P48775 39106326
    458376 9b1q:A (2.624) BS04 A1AH8 N/A N/A P48775 39106326
    458377 9b1q:B (2.624) BS01 A1AH8 N/A N/A P48775 39106326
    458378 9b1q:B (2.624) BS02 HEM N/A N/A P48775 39106326
    458379 9b1q:B (2.624) BS03 A1AH8 N/A N/A P48775 39106326
    458380 9b1q:B (2.624) BS04 ZIQ N/A N/A P48775 39106326
    458381 9b1q:C (2.624) BS01 HEM N/A N/A P48775 39106326
    458382 9b1q:C (2.624) BS02 A1AH8 N/A N/A P48775 39106326
    458383 9b1q:C (2.624) BS03 ZIQ N/A N/A P48775 39106326
    458384 9b1q:C (2.624) BS04 A1AH8 N/A N/A P48775 39106326
    458385 9b1q:D (2.624) BS01 A1AH8 N/A N/A P48775 39106326
    458386 9b1q:D (2.624) BS02 HEM N/A N/A P48775 39106326
    458387 9b1q:D (2.624) BS03 A1AH8 N/A N/A P48775 39106326
    458388 9b1q:D (2.624) BS04 ZIQ N/A N/A P48775 39106326
    458389 9b1u:A (1.46) BS01 PQQ N/A N/A B7KXB5 39116128
    458390 9b1v:A (1.55) BS01 PQQ N/A N/A B7KXB5 39116128
    458391 9b20:A (1.55) BS01 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    458392 9b20:A (1.55) BS03 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    458393 9b20:B (1.55) BS01 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    458394 9b20:B (1.55) BS02 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    458395 9b21:A (1.6) BS01 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    458396 9b21:A (1.6) BS04 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    458397 9b21:B (1.6) BS01 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    458398 9b21:B (1.6) BS02 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    458399 9b22:A (1.3) BS03 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    458400 9b22:A (1.3) BS04 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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