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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    457401 8yhf:A (1.4) BS01 A1D6I 2.7.11.30 GO:0004672 ... P36897 N/A
    457402 8yhh:A (1.95) BS01 ADP ? GO:0003777 ... P52732 N/A
    457403 8yhh:B (1.95) BS01 ADP ? GO:0003777 ... P52732 N/A
    457404 8yhl:A (1.47) BS01 A1D6I 2.7.11.30 GO:0004672 ... P36897 N/A
    457405 8yhr:A (1.7) BS01 ORO 1.3.5.2 GO:0004151 ... Q02127 38724483
    457406 8yhr:A (1.7) BS02 FMN 1.3.5.2 GO:0004151 ... Q02127 38724483
    457407 8yhr:A (1.7) BS03 A1LYU 1.3.5.2 GO:0004151 ... Q02127 38724483
    457408 8yhs:A (1.5) BS01 A1D6J ? N/A Q58F21 N/A
    457409 8yhw:A (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    457410 8yhw:B (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    457411 8yhw:C (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    457412 8yhw:D (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    457413 8yib:A (2.27) BS01 4I1 3.1.1.3 N/A A0A0U1MWF9 38757397
    457414 8yib:B (2.27) BS01 OCA 3.1.1.3 N/A A0A0U1MWF9 38757397
    457415 8yib:B (2.27) BS02 4I1 3.1.1.3 N/A A0A0U1MWF9 38757397
    457416 8yie:A (1.7) BS01 AC1 N/A GO:0004556 ... D2YYD7 N/A
    457417 8yie:B (1.7) BS01 AC1 N/A GO:0004556 ... D2YYD7 N/A
    457418 8yif:A (1.6) BS01 A1L2I N/A GO:0004556 ... D2YYD7 N/A
    457419 8yik:A (1.3) BS01 ATP N/A N/A A0A0C5B080 39166497
    457420 8yja:A (2.2) BS01 IHP N/A N/A A0A2S3R7M0 39093838
    457421 8yja:B (2.2) BS01 IHP N/A N/A A0A2S3R7M0 39093838
    457422 8yjc:A (1.3) BS01 IHP N/A N/A A0A2S3R7M0 39093838
    457423 8yk3:A (3.5) BS01 GLA N/A N/A L8B3G2 39234034
    457424 8yk3:B (3.5) BS01 GLA N/A N/A L8B3G2 39234034
    457425 8yk5:A (2.1) BS02 GOL 3.1.4.3 GO:0004629 ... A0A077KPD5 38503170
    457426 8yk5:B (2.1) BS02 GOL 3.1.4.3 GO:0004629 ... A0A077KPD5 38503170
    457427 8yk9:B (3.4) BS01 ADP N/A N/A Q981B4 39077943
    457428 8yk9:C (3.4) BS01 ADP N/A N/A Q981B4 39077943
    457429 8yk9:D (3.4) BS01 ADP N/A N/A Q981B4 39077943
    457430 8yk9:D (3.4) BS02 ADP N/A N/A Q981B4 39077943
    457431 8yki:A (2.79) BS01 A1LY1 2.7.10.1 N/A P11362 38821585
    457432 8yki:B (2.79) BS01 A1LY1 2.7.10.1 N/A P11362 38821585
    457433 8yku:A (2.17) BS07 TPS N/A N/A A0A232BM78 N/A
    457434 8yku:A (2.17) BS08 ANP N/A N/A A0A232BM78 N/A
    457435 8ykv:R (2.48) BS01 A1LYV ? GO:0002001 ... Q9BXA5 38834763
    457436 8yky:R (2.99) BS01 A1AEI N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    457437 8yky:R (2.99) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    457438 8yl9:A (2.75) BS04 PPV 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    457439 8yl9:A (2.75) BS05 BTM 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    457440 8yl9:B (2.75) BS04 PPV 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    457441 8yl9:B (2.75) BS05 BTM 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    457442 8yl9:I (2.75) BS04 PPV 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    457443 8yl9:I (2.75) BS05 BTM 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    457444 8yla:A (1.3) BS03 PPV 2.5.1.29
    2.5.1.81
    4.2.3.176    		 N/A A1DN30 38584136
    457445 8yla:A (1.3) BS04 BTM 2.5.1.29
    2.5.1.81
    4.2.3.176    		 N/A A1DN30 38584136
    457446 8yla:B (1.3) BS03 PPV 2.5.1.29
    2.5.1.81
    4.2.3.176    		 N/A A1DN30 38584136
    457447 8yla:B (1.3) BS04 BTM 2.5.1.29
    2.5.1.81
    4.2.3.176    		 N/A A1DN30 38584136
    457448 8ylb:A (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457449 8ylb:A (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457450 8ylb:B (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457451 8ylb:B (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457452 8ylb:C (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457453 8ylb:C (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457454 8ylb:D (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457455 8ylb:D (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457456 8ylb:E (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457457 8ylb:E (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457458 8ylb:F (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457459 8ylb:F (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457460 8ylb:G (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457461 8ylb:G (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457462 8ylb:H (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457463 8ylb:H (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457464 8ylb:I (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457465 8ylb:I (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457466 8ylb:J (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457467 8ylb:J (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457468 8ylb:K (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457469 8ylb:K (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457470 8ylb:L (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457471 8ylb:L (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457472 8ylb:M (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457473 8ylb:M (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457474 8ylb:N (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457475 8ylb:N (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    457476 8ylc:A (2.30004) BS02 A1D6Q 3.1.4.53 N/A Q08499 N/A
    457477 8ylc:B (2.30004) BS02 A1D6Q 3.1.4.53 N/A Q08499 N/A
    457478 8yle:A (1.86) BS01 ACP 3.1.-.-
    5.6.2.4    		 GO:0003676 ... Q14191 N/A
    457479 8yls:A (1.93) BS01 A1LYZ N/A N/A P0DTC1 N/A
    457480 8ylt:A (3.09) BS01 NAD N/A N/A D4G637 39059542
    457481 8ylt:B (3.09) BS01 NAD N/A N/A D4G637 39059542
    457482 8ylt:C (3.09) BS01 NAD N/A N/A D4G637 39059542
    457483 8ylt:D (3.09) BS01 NAD N/A N/A D4G637 39059542
    457484 8ym7:A (2.83) BS01 FAD 1.14.99.66 N/A O60341 N/A
    457485 8ym7:A (2.83) BS02 A1LZJ 1.14.99.66 N/A O60341 N/A
    457486 8yo1:C (3.55) BS01 ANP N/A N/A A0A346FJ89 N/A
    457487 8yo1:D (3.55) BS01 ANP N/A N/A A0A346FJ89 N/A
    457488 8yo7:C (3.16) BS03 ASW N/A N/A A0A346FJ89 N/A
    457489 8yo7:D (3.16) BS03 ASW N/A N/A A0A346FJ89 N/A
    457490 8yod:C (6.8) BS01 ANP N/A N/A A0A346FJ89 N/A
    457491 8yod:D (6.8) BS01 ANP N/A N/A A0A346FJ89 N/A
    457492 8yon:C (6.73) BS03 ANP N/A N/A A0A346FJ89 N/A
    457493 8yon:D (6.73) BS03 ANP N/A N/A A0A346FJ89 N/A
    457494 8you:A (1.8) BS01 SEK ? GO:0046872 ... A0A5C7ETD9 N/A
    457495 8you:B (1.8) BS04 SE ? GO:0046872 ... A0A5C7ETD9 N/A
    457496 8yp3:A (2.12) BS01 UD1 N/A N/A A0A2H1VI03 39039661
    457497 8yp3:B (2.12) BS01 UD1 N/A N/A A0A2H1VI03 39039661
    457498 8yp3:C (2.12) BS01 UD1 N/A N/A A0A2H1VI03 39039661
    457499 8yp3:D (2.12) BS01 UD1 N/A N/A A0A2H1VI03 39039661
    457500 8ypk:A (2.7) BS01 A1L0C N/A N/A Q60692 38906067
    457501 8ypk:C (2.7) BS01 A1L0C N/A N/A O55234 38906067
    457502 8ypk:D (2.7) BS01 A1L0C N/A N/A O55234 38906067
    457503 8ypk:F (2.7) BS01 A1L0C N/A N/A Q60692 38906067
    457504 8yq8:A (2.1) BS01 A1LZS N/A N/A D9N170 39026651
    457505 8yq8:A (2.1) BS02 NDP N/A N/A D9N170 39026651
    457506 8yq8:A (2.1) BS03 UMP N/A N/A D9N170 39026651
    457507 8yq8:A (2.1) BS04 UMP N/A N/A D9N170 39026651
    457508 8yq8:B (2.1) BS01 UMP N/A N/A D9N170 39026651
    457509 8yq8:B (2.1) BS02 A1LZS N/A N/A D9N170 39026651
    457510 8yq8:B (2.1) BS03 NDP N/A N/A D9N170 39026651
    457511 8yq8:B (2.1) BS04 UMP N/A N/A D9N170 39026651
    457512 8yq9:A (2.4) BS01 NDP N/A N/A D9N170 39026651
    457513 8yq9:A (2.4) BS02 A1LZT N/A N/A D9N170 39026651
    457514 8yq9:A (2.4) BS03 UMP N/A N/A D9N170 39026651
    457515 8yq9:A (2.4) BS04 UMP N/A N/A D9N170 39026651
    457516 8yq9:B (2.4) BS01 UMP N/A N/A D9N170 39026651
    457517 8yq9:B (2.4) BS02 NDP N/A N/A D9N170 39026651
    457518 8yq9:B (2.4) BS03 A1LZT N/A N/A D9N170 39026651
    457519 8yq9:B (2.4) BS04 UMP N/A N/A D9N170 39026651
    457520 8yqp:A (1.76) BS01 A1D6Y N/A N/A N/A 39013318
    457521 8yr2:A (2.89) BS01 41U ? GO:0003779 ... P23975 38750358
    457522 8yr2:A (2.89) BS02 PIO ? GO:0003779 ... P23975 38750358
    457523 8yr2:A (2.89) BS03 CLR ? GO:0003779 ... P23975 38750358
    457524 8yr2:A (2.89) BS04 CLR ? GO:0003779 ... P23975 38750358
    457525 8yr2:A (2.89) BS05 CLR ? GO:0003779 ... P23975 38750358
    457526 8yr2:A (2.89) BS06 CLR ? GO:0003779 ... P23975 38750358
    457527 8yr2:A (2.89) BS07 A1LX7 ? GO:0003779 ... P23975 38750358
    457528 8yr2:A (2.89) BS08 A1LX7 ? GO:0003779 ... P23975 38750358
    457529 8yr2:A (2.89) BS09 CLR ? GO:0003779 ... P23975 38750358
    457530 8yr2:A (2.89) BS10 CLR ? GO:0003779 ... P23975 38750358
    457531 8yr2:A (2.89) BS11 CLR ? GO:0003779 ... P23975 38750358
    457532 8yr2:A (2.89) BS12 CLR ? GO:0003779 ... P23975 38750358
    457533 8yr2:B (2.89) BS01 41U ? GO:0003779 ... P23975 38750358
    457534 8yr2:B (2.89) BS02 PIO ? GO:0003779 ... P23975 38750358
    457535 8yr2:B (2.89) BS03 CLR ? GO:0003779 ... P23975 38750358
    457536 8yr2:B (2.89) BS04 CLR ? GO:0003779 ... P23975 38750358
    457537 8yr2:B (2.89) BS05 CLR ? GO:0003779 ... P23975 38750358
    457538 8yr2:B (2.89) BS06 CLR ? GO:0003779 ... P23975 38750358
    457539 8yr2:B (2.89) BS07 A1LX7 ? GO:0003779 ... P23975 38750358
    457540 8yr2:B (2.89) BS08 A1LX7 ? GO:0003779 ... P23975 38750358
    457541 8yr2:B (2.89) BS09 CLR ? GO:0003779 ... P23975 38750358
    457542 8yr2:B (2.89) BS10 CLR ? GO:0003779 ... P23975 38750358
    457543 8yr2:B (2.89) BS11 CLR ? GO:0003779 ... P23975 38750358
    457544 8yr2:B (2.89) BS12 CLR ? GO:0003779 ... P23975 38750358
    457545 8yr3:A (3.2) BS01 GSH N/A N/A Q9NP58 38822018
    457546 8yr3:B (3.2) BS01 GSH N/A N/A Q9NP58 38822018
    457547 8yr4:A (3.1) BS01 FGA N/A N/A Q9NP58 38822018
    457548 8yr4:B (3.1) BS01 FGA N/A N/A Q9NP58 38822018
    457549 8yrc:A (1.7) BS01 CL ? GO:0005829 ... A0A0H3JTJ5 38581951
    457550 8yrg:R (3.14) BS01 A1LZU ? GO:0004930 ... P0ABE7
    Q96LA9    		 38718132
    457551 8yrh:A (1.841) BS01 ROA N/A N/A P0DTD1 38865813
    457552 8yrt:A (2.0) BS01 PLP ? GO:0003824 ... F4KWH0 N/A
    457553 8yru:A (2.0) BS01 ZXN ? GO:0003824 ... F4KWH0 N/A
    457554 8yrv:A (1.7) BS01 OCF ? GO:0003824 ... F4KWH0 N/A
    457555 8ysx:A (2.2) BS01 A1L0D N/A GO:0000502 ... A0A8C0T7K4 38906067
    457556 8ysx:C (2.2) BS01 A1L0D N/A N/A Q5W416 38906067
    457557 8ysx:D (2.2) BS01 A1L0D N/A N/A Q5W416 38906067
    457558 8ysx:F (2.2) BS01 A1L0D N/A GO:0000502 ... A0A8C0T7K4 38906067
    457559 8yt5:A (1.6) BS01 ADP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    457560 8yte:C (2.26) BS02 GM1 N/A N/A P04629 38950284
    457561 8yto:A (1.04) BS01 A1LZO N/A N/A N/A 38909835
    457562 8ytp:A (1.36) BS01 A1LZO N/A N/A N/A 38909835
    457563 8yts:A (1.15) BS01 HEC ? GO:0009055 ... W0DLP1 N/A
    457564 8yts:B (1.15) BS01 HEC ? GO:0009055 ... W0DLP1 N/A
    457565 8ytx:A (2.53) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    457566 8ytx:A (2.53) BS03 A1D68 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    457567 8ytx:B (2.53) BS01 GDP 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    457568 8ytx:B (2.53) BS02 A1D68 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    457569 8ytx:C (2.53) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    457570 8ytx:D (2.53) BS01 GDP 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    457571 8ytx:D (2.53) BS02 A1D68 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    457572 8ytx:F (2.53) BS01 ACP 6.3.2.25 GO:0046872 ... A0A8V0Z8P0 N/A
    457573 8yu9:A (3.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    457574 8yu9:B (3.25) BS01 A1D7A ? GO:0005525 ... A0A8D0VN39 N/A
    457575 8yu9:B (3.25) BS02 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    457576 8yu9:C (3.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    457577 8yu9:C (3.25) BS03 A1D7A 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    457578 8yu9:D (3.25) BS01 A1D7A ? GO:0005525 ... A0A8D0VN39 N/A
    457579 8yu9:D (3.25) BS02 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    457580 8yu9:F (3.25) BS01 ACP 6.3.2.25 GO:0046872 ... A0A8V0Z8P0 N/A
    457581 8yua:A (2.37) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    457582 8yua:B (2.37) BS01 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    457583 8yua:B (2.37) BS02 A1D69 ? GO:0005525 ... A0A8D0VN39 N/A
    457584 8yua:C (2.37) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    457585 8yua:D (2.37) BS01 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    457586 8yua:D (2.37) BS02 A1D69 ? GO:0005525 ... A0A8D0VN39 N/A
    457587 8yua:F (2.37) BS01 ACP 6.3.2.25 GO:0046872 ... A0A8V0Z8P0 N/A
    457588 8yut:R (2.7) BS01 A1D67 ? GO:0004930 ... P25021 38647423
    457589 8yut:R (2.7) BS02 CLR ? GO:0004930 ... P25021 38647423
    457590 8yuu:R (2.7) BS01 HSM ? GO:0004930 ... Q9Y5N1 38647423
    457591 8yuu:R (2.7) BS02 CLR ? GO:0004930 ... Q9Y5N1 38647423
    457592 8yuv:R (3.0) BS01 A1LY4 ? GO:0004930 ... Q9Y5N1 38647423
    457593 8yuv:R (3.0) BS02 CLR ? GO:0004930 ... Q9Y5N1 38647423
    457594 8yvg:A (2.0) BS01 A1L0C N/A GO:0000502 ... A0A8C0T7K4 38906067
    457595 8yvg:C (2.0) BS01 A1L0C N/A N/A Q5W416 38906067
    457596 8yvg:D (2.0) BS01 A1L0C N/A N/A Q5W416 38906067
    457597 8yvg:F (2.0) BS01 A1L0C N/A GO:0000502 ... A0A8C0T7K4 38906067
    457598 8yvp:A (2.5) BS01 A1L0D N/A N/A Q60692 38906067
    457599 8yvp:C (2.5) BS01 A1L0D N/A N/A O55234 38906067
    457600 8yvp:C (2.5) BS02 A1L0D N/A N/A O55234 38906067
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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