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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    457001 8xr6:g (2.53) BS03 CLA N/A N/A N/A N/A
    457002 8xr6:g (2.53) BS04 CLA N/A N/A N/A N/A
    457003 8xr6:g (2.53) BS05 CLA N/A N/A N/A N/A
    457004 8xr6:g (2.53) BS06 CLA N/A N/A N/A N/A
    457005 8xr6:g (2.53) BS07 CLA N/A N/A N/A N/A
    457006 8xr6:g (2.53) BS08 CLA N/A N/A N/A N/A
    457007 8xr6:g (2.53) BS09 CLA N/A N/A N/A N/A
    457008 8xr6:g (2.53) BS10 CLA N/A N/A N/A N/A
    457009 8xr6:g (2.53) BS11 KC2 N/A N/A N/A N/A
    457010 8xr6:g (2.53) BS12 CLA N/A N/A N/A N/A
    457011 8xr6:g (2.53) BS13 CLA N/A N/A N/A N/A
    457012 8xr6:g (2.53) BS14 II0 N/A N/A N/A N/A
    457013 8xr6:g (2.53) BS15 II0 N/A N/A N/A N/A
    457014 8xr6:g (2.53) BS16 II0 N/A N/A N/A N/A
    457015 8xr6:g (2.53) BS17 IHT N/A N/A N/A N/A
    457016 8xr6:g (2.53) BS18 II0 N/A N/A N/A N/A
    457017 8xr6:h (2.53) BS01 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    457018 8xr6:h (2.53) BS02 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    457019 8xr6:h (2.53) BS03 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    457020 8xr6:h (2.53) BS04 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    457021 8xr6:h (2.53) BS05 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    457022 8xr6:h (2.53) BS06 8CT N/A GO:0009523 ... A0A222AIE4 N/A
    457023 8xr6:i (2.53) BS01 CLA N/A GO:0005737 ... A0A222AI80 N/A
    457024 8xr6:i (2.53) BS02 CLA N/A GO:0005737 ... A0A222AI80 N/A
    457025 8xr6:k (2.53) BS01 CLA N/A GO:0005737 ... A0A222AIA0 N/A
    457026 8xr6:k (2.53) BS02 8CT N/A GO:0005737 ... A0A222AIA0 N/A
    457027 8xr6:k (2.53) BS03 8CT N/A GO:0005737 ... A0A222AIA0 N/A
    457028 8xr6:n (2.53) BS01 CLA N/A N/A N/A N/A
    457029 8xr6:n (2.53) BS02 CLA N/A N/A N/A N/A
    457030 8xr6:n (2.53) BS03 CLA N/A N/A N/A N/A
    457031 8xr6:n (2.53) BS04 CLA N/A N/A N/A N/A
    457032 8xr6:n (2.53) BS05 CLA N/A N/A N/A N/A
    457033 8xr6:n (2.53) BS06 CLA N/A N/A N/A N/A
    457034 8xr6:n (2.53) BS07 CLA N/A N/A N/A N/A
    457035 8xr6:p (2.53) BS01 CLA N/A N/A N/A N/A
    457036 8xr6:p (2.53) BS02 II0 N/A N/A N/A N/A
    457037 8xr6:p (2.53) BS03 CLA N/A N/A N/A N/A
    457038 8xr6:p (2.53) BS04 CLA N/A N/A N/A N/A
    457039 8xr6:p (2.53) BS05 CLA N/A N/A N/A N/A
    457040 8xr6:p (2.53) BS06 CLA N/A N/A N/A N/A
    457041 8xr6:p (2.53) BS07 CLA N/A N/A N/A N/A
    457042 8xr6:p (2.53) BS08 CLA N/A N/A N/A N/A
    457043 8xr6:p (2.53) BS09 CLA N/A N/A N/A N/A
    457044 8xr6:p (2.53) BS10 CLA N/A N/A N/A N/A
    457045 8xr6:p (2.53) BS11 CLA N/A N/A N/A N/A
    457046 8xr6:p (2.53) BS12 KC2 N/A N/A N/A N/A
    457047 8xr6:p (2.53) BS13 CLA N/A N/A N/A N/A
    457048 8xr6:p (2.53) BS14 CLA N/A N/A N/A N/A
    457049 8xr6:p (2.53) BS15 II0 N/A N/A N/A N/A
    457050 8xr6:p (2.53) BS16 II0 N/A N/A N/A N/A
    457051 8xr6:p (2.53) BS17 II0 N/A N/A N/A N/A
    457052 8xr6:p (2.53) BS18 II0 N/A N/A N/A N/A
    457053 8xr6:p (2.53) BS19 IHT N/A N/A N/A N/A
    457054 8xr6:p (2.53) BS20 CLA N/A N/A N/A N/A
    457055 8xr6:v (2.53) BS01 HEM N/A N/A A0A222AI35 N/A
    457056 8xr6:x (2.53) BS01 CLA N/A GO:0009523 ... A0A222AI61 N/A
    457057 8xr6:y (2.53) BS01 8CT N/A GO:0009523 ... A0A222AI69 N/A
    457058 8xr6:z (2.53) BS01 CLA N/A GO:0009523 ... A0A222AI96 N/A
    457059 8xrg:A (1.61) BS01 ADP N/A N/A Q00942 N/A
    457060 8xrh:A (1.25) BS01 ANP N/A N/A Q00942 N/A
    457061 8xrv:A (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    457062 8xrv:B (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    457063 8xrv:C (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    457064 8xrv:D (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    457065 8xrv:E (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    457066 8xrv:F (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    457067 8xrx:A (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    457068 8xrx:A (2.5) BS02 BGC N/A GO:0004553 ... N/A 38527679
    457069 8xrx:B (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    457070 8xrx:B (2.5) BS02 GLC N/A GO:0004553 ... N/A 38527679
    457071 8xrx:C (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    457072 8xrx:D (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    457073 8xrx:F (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    457074 8xsx:CB (2.4) BS03 ADP N/A GO:0002244 ... P13639 38942792
    457075 8xt0:Se (3.2) BS02 GDP N/A GO:0003723 ... P51398 38942792
    457076 8xt2:Se (3.3) BS02 GDP N/A GO:0003723 ... P51398 38942792
    457077 8xte:A (1.99) BS01 SAH N/A N/A A0A0B5L781 39150221
    457078 8xte:A (1.99) BS02 A1LWB N/A N/A A0A0B5L781 39150221
    457079 8xte:B (1.99) BS01 SAH N/A N/A A0A0B5L781 39150221
    457080 8xte:B (1.99) BS02 A1LWB N/A N/A A0A0B5L781 39150221
    457081 8xte:C (1.99) BS01 SAH N/A N/A A0A0B5L781 39150221
    457082 8xte:C (1.99) BS02 A1LWB N/A N/A A0A0B5L781 39150221
    457083 8xte:D (1.99) BS01 SAH N/A N/A A0A0B5L781 39150221
    457084 8xte:D (1.99) BS02 A1LWB N/A N/A A0A0B5L781 39150221
    457085 8xte:E (1.99) BS01 SAH N/A N/A A0A0B5L781 39150221
    457086 8xte:E (1.99) BS02 A1LWB N/A N/A A0A0B5L781 39150221
    457087 8xte:F (1.99) BS01 SAH N/A N/A A0A0B5L781 39150221
    457088 8xte:F (1.99) BS02 A1LWB N/A N/A A0A0B5L781 39150221
    457089 8xtf:A (2.13) BS01 SAH N/A N/A A0A0B5L781 39150221
    457090 8xtf:A (2.13) BS02 A1LWC N/A N/A A0A0B5L781 39150221
    457091 8xtg:A (2.0) BS01 SAH N/A N/A A0A0B5L781 39150221
    457092 8xtg:A (2.0) BS02 A1LWD N/A N/A A0A0B5L781 39150221
    457093 8xtg:B (2.0) BS01 SAH N/A N/A A0A0B5L781 39150221
    457094 8xtg:B (2.0) BS02 A1LWD N/A N/A A0A0B5L781 39150221
    457095 8xtg:C (2.0) BS01 SAH N/A N/A A0A0B5L781 39150221
    457096 8xtg:C (2.0) BS02 A1LWD N/A N/A A0A0B5L781 39150221
    457097 8xtg:D (2.0) BS01 SAH N/A N/A A0A0B5L781 39150221
    457098 8xtg:D (2.0) BS02 A1LWD N/A N/A A0A0B5L781 39150221
    457099 8xtg:E (2.0) BS01 SAH N/A N/A A0A0B5L781 39150221
    457100 8xtg:E (2.0) BS02 A1LWD N/A N/A A0A0B5L781 39150221
    457101 8xtg:F (2.0) BS01 SAH N/A N/A A0A0B5L781 39150221
    457102 8xtg:F (2.0) BS02 A1LWD N/A N/A A0A0B5L781 39150221
    457103 8xuo:A (2.84) BS01 ADP ? N/A A0A3Q7IF17 38866053
    457104 8xuo:A (2.84) BS02 IHP ? N/A A0A3Q7IF17 38866053
    457105 8xuo:G (2.84) BS01 ADP ? N/A A0A3Q7IF17 38866053
    457106 8xuo:G (2.84) BS02 IHP ? N/A A0A3Q7IF17 38866053
    457107 8xuq:A (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    457108 8xuq:A (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    457109 8xuq:E (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    457110 8xuq:E (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    457111 8xuq:F (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    457112 8xuq:F (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    457113 8xuq:G (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    457114 8xuq:G (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    457115 8xus:B (3.18) BS01 IDU N/A GO:0005515 ... P0DTC2 39071099
    457116 8xut:A (3.2) BS01 IDU N/A N/A P0DTC2 39071099
    457117 8xut:B (3.2) BS01 IDU N/A N/A P0DTC2 39071099
    457118 8xuu:A (3.69) BS01 IDU N/A GO:0005515 ... P0DTC2 39071099
    457119 8xuv:A (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    457120 8xuv:A (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    457121 8xuv:B (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    457122 8xuv:B (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    457123 8xuv:C (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    457124 8xuv:C (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    457125 8xuv:D (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    457126 8xuv:D (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    457127 8xuv:E (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    457128 8xuv:E (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    457129 8xuv:F (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    457130 8xuv:F (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    457131 8xuv:G (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    457132 8xuv:G (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    457133 8xuv:H (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    457134 8xuv:H (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    457135 8xuv:I (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    457136 8xuv:I (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    457137 8xuv:J (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    457138 8xuv:J (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    457139 8xuv:K (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    457140 8xuv:K (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    457141 8xuv:L (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    457142 8xuv:L (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    457143 8xv2:A (3.7) BS01 VIB ? GO:0005506 ... P0ABE7
    Q9BZV2    		 38503960
    457144 8xv5:A (3.7) BS01 PXM ? GO:0005506 ... P0ABE7
    Q9BZV2    		 38503960
    457145 8xv9:A (3.8) BS01 2TA ? GO:0005506 ... P0ABE7
    Q9BZV2    		 38503960
    457146 8xvb:A (3.4) BS02 ATP N/A N/A P03763 39085263
    457147 8xvb:A (3.4) BS03 ATP N/A N/A P03763 39085263
    457148 8xvb:B (3.4) BS02 ATP N/A N/A P03763 39085263
    457149 8xvb:B (3.4) BS03 ATP N/A N/A P03763 39085263
    457150 8xvb:C (3.4) BS03 ATP N/A N/A P03763 39085263
    457151 8xvb:D (3.4) BS03 ATP N/A N/A P03763 39085263
    457152 8xvb:D (3.4) BS04 ATP N/A N/A P03763 39085263
    457153 8xvb:E (3.4) BS02 ATP N/A N/A P03763 39085263
    457154 8xvb:F (3.4) BS03 ATP N/A N/A P03763 39085263
    457155 8xvb:G (3.4) BS03 ATP N/A N/A P03763 39085263
    457156 8xvb:G (3.4) BS04 ATP N/A N/A P03763 39085263
    457157 8xvb:H (3.4) BS03 ATP N/A N/A P03763 39085263
    457158 8xvc:A (4.32) BS01 ADP N/A N/A P03763 39085263
    457159 8xvc:B (4.32) BS01 ADP N/A N/A P03763 39085263
    457160 8xvc:C (4.32) BS01 ADP N/A N/A P03763 39085263
    457161 8xvc:D (4.32) BS01 ADP N/A N/A P03763 39085263
    457162 8xvc:E (4.32) BS01 ADP N/A N/A P03763 39085263
    457163 8xvc:F (4.32) BS01 ADP N/A N/A P03763 39085263
    457164 8xvc:G (4.32) BS01 ADP N/A N/A P03763 39085263
    457165 8xvc:H (4.32) BS01 ADP N/A N/A P03763 39085263
    457166 8xvc:I (4.32) BS01 ADP N/A N/A P03763 39085263
    457167 8xvc:J (4.32) BS01 ADP N/A N/A P03763 39085263
    457168 8xvc:K (4.32) BS01 ADP N/A N/A P03763 39085263
    457169 8xvc:L (4.32) BS01 ADP N/A N/A P03763 39085263
    457170 8xvc:M (4.32) BS01 ADP N/A N/A P03763 39085263
    457171 8xvc:N (4.32) BS01 ADP N/A N/A P03763 39085263
    457172 8xvc:O (4.32) BS01 ADP N/A N/A P03763 39085263
    457173 8xvc:P (4.32) BS01 ADP N/A N/A P03763 39085263
    457174 8xvc:Q (4.32) BS01 ADP N/A N/A P03763 39085263
    457175 8xvc:R (4.32) BS01 ADP N/A N/A P03763 39085263
    457176 8xvd:A (4.43) BS01 ADP N/A N/A P03763 39085263
    457177 8xvd:B (4.43) BS01 ADP N/A N/A P03763 39085263
    457178 8xvd:C (4.43) BS01 ADP N/A N/A P03763 39085263
    457179 8xvd:D (4.43) BS01 ADP N/A N/A P03763 39085263
    457180 8xvd:E (4.43) BS01 ADP N/A N/A P03763 39085263
    457181 8xvd:F (4.43) BS01 ADP N/A N/A P03763 39085263
    457182 8xvd:G (4.43) BS01 ADP N/A N/A P03763 39085263
    457183 8xvd:H (4.43) BS01 ADP N/A N/A P03763 39085263
    457184 8xvd:I (4.43) BS01 ADP N/A N/A P03763 39085263
    457185 8xvd:J (4.43) BS01 ADP N/A N/A P03763 39085263
    457186 8xvd:K (4.43) BS01 ADP N/A N/A P03763 39085263
    457187 8xvd:L (4.43) BS01 ADP N/A N/A P03763 39085263
    457188 8xvd:M (4.43) BS01 ADP N/A N/A P03763 39085263
    457189 8xvd:N (4.43) BS01 ADP N/A N/A P03763 39085263
    457190 8xvd:O (4.43) BS01 ADP N/A N/A P03763 39085263
    457191 8xvd:P (4.43) BS01 ADP N/A N/A P03763 39085263
    457192 8xvd:Q (4.43) BS01 ADP N/A N/A P03763 39085263
    457193 8xvd:R (4.43) BS01 ADP N/A N/A P03763 39085263
    457194 8xvd:S (4.43) BS01 ADP N/A N/A P03763 39085263
    457195 8xvd:T (4.43) BS01 ADP N/A N/A P03763 39085263
    457196 8xvg:A (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    457197 8xvg:B (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    457198 8xvg:B (9.4) BS02 ADP N/A GO:0000492 ... Q9Y230 39154037
    457199 8xvg:C (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    457200 8xvg:D (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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