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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    456601 8xoo:T (1.84) BS01 ADP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456602 8xoo:T (1.84) BS02 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    456603 8xor:R (3.0) BS01 CLR N/A N/A P25116 38997424
    456604 8xor:R (3.0) BS02 CLR N/A N/A P25116 38997424
    456605 8xor:R (3.0) BS03 CLR N/A N/A P25116 38997424
    456606 8xor:R (3.0) BS04 CLR N/A N/A P25116 38997424
    456607 8xor:R (3.0) BS05 CLR N/A N/A P25116 38997424
    456608 8xor:R (3.0) BS06 CLR N/A N/A P25116 38997424
    456609 8xos:R (3.2) BS01 CLR N/A N/A P25116 38997424
    456610 8xos:R (3.2) BS02 CLR N/A N/A P25116 38997424
    456611 8xov:A (2.55) BS01 ANP 2.7.11.1 GO:0004672 ... Q15418 N/A
    456612 8xox:A (1.9) BS01 YAM 2.7.10.2 GO:0004672 ... Q14289 N/A
    456613 8xpk:A (2.0) BS01 GLC N/A N/A N/A N/A
    456614 8xpk:A (2.0) BS02 BGC N/A N/A N/A N/A
    456615 8xpk:B (2.0) BS01 GLC N/A N/A N/A N/A
    456616 8xpk:B (2.0) BS02 BGC N/A N/A N/A N/A
    456617 8xpk:B (2.0) BS03 BGC N/A N/A N/A N/A
    456618 8xpt:A (3.35) BS01 SAH 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    456619 8xpt:B (3.35) BS01 SAH 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    456620 8xpt:C (3.35) BS01 SAH 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    456621 8xpt:D (3.35) BS01 SAH 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    456622 8xpu:B (3.3) BS01 VRW N/A GO:0002720 ... Q01650 38956038
    456623 8xpv:A (1.55) BS01 4Z5 2.7.10.1 GO:0004672 ... P29317 N/A
    456624 8xq7:A (3.15) BS01 CMP N/A GO:0005886 ... A3RL54 38957574
    456625 8xq7:B (3.15) BS01 CMP N/A GO:0005886 ... A3RL54 38957574
    456626 8xq8:A (3.35) BS01 CMP N/A GO:0005886 ... A3RL54 38957574
    456627 8xql:A (2.99) BS01 GOQ N/A N/A P63092 38776963
    456628 8xql:R (2.99) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    456629 8xql:R (2.99) BS02 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    456630 8xql:R (2.99) BS03 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    456631 8xqn:R (3.05) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    456632 8xqn:R (3.05) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    456633 8xqo:R (2.77) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    456634 8xqo:R (2.77) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    456635 8xqp:R (3.29) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    456636 8xqp:R (3.29) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    456637 8xqr:R (3.2) BS01 FLF N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    456638 8xqs:R (3.3) BS01 FLF N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    456639 8xqs:R (3.3) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    456640 8xqt:R (2.94) BS01 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    456641 8xqt:R (2.94) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    456642 8xqw:A (2.9) BS01 ANP N/A N/A N/A 39197449
    456643 8xqw:C (2.9) BS01 ANP N/A N/A N/A 39197449
    456644 8xqw:D (2.9) BS01 A1LXL N/A N/A A0A218N8A7 39197449
    456645 8xqw:E (2.9) BS01 ANP N/A N/A N/A 39197449
    456646 8xqw:F (2.9) BS01 ANP N/A N/A N/A 39197449
    456647 8xqw:F (2.9) BS02 ANP N/A N/A N/A 39197449
    456648 8xqw:I (2.9) BS01 Y01 N/A N/A N/A 39197449
    456649 8xqw:M (2.9) BS01 Y01 N/A N/A A0A2K3DQ46 39197449
    456650 8xqw:P (2.9) BS01 A1LXL N/A N/A A0A2K3DHV6 39197449
    456651 8xqw:P (2.9) BS02 A1LXL N/A N/A A0A2K3DHV6 39197449
    456652 8xqx:I (2.8) BS01 Y01 N/A N/A N/A 39197449
    456653 8xqx:M (2.8) BS01 Y01 N/A N/A A0A2K3DQ46 39197449
    456654 8xqx:P (2.8) BS01 A1LXL N/A N/A A0A2K3DHV6 39197449
    456655 8xqx:P (2.8) BS02 A1LXL N/A N/A A0A2K3DHV6 39197449
    456656 8xr4:A (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    456657 8xr4:B (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    456658 8xr4:C (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    456659 8xr4:D (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    456660 8xr4:E (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    456661 8xr4:F (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    456662 8xr4:G (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    456663 8xr4:H (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    456664 8xr6:0 (2.53) BS01 CLA N/A N/A N/A N/A
    456665 8xr6:0 (2.53) BS02 CLA N/A N/A N/A N/A
    456666 8xr6:0 (2.53) BS03 CLA N/A N/A N/A N/A
    456667 8xr6:0 (2.53) BS04 CLA N/A N/A N/A N/A
    456668 8xr6:0 (2.53) BS05 KC2 N/A N/A N/A N/A
    456669 8xr6:0 (2.53) BS06 CLA N/A N/A N/A N/A
    456670 8xr6:0 (2.53) BS07 CLA N/A N/A N/A N/A
    456671 8xr6:0 (2.53) BS08 CLA N/A N/A N/A N/A
    456672 8xr6:0 (2.53) BS09 CLA N/A N/A N/A N/A
    456673 8xr6:0 (2.53) BS10 CLA N/A N/A N/A N/A
    456674 8xr6:0 (2.53) BS11 CLA N/A N/A N/A N/A
    456675 8xr6:0 (2.53) BS12 8CT N/A N/A N/A N/A
    456676 8xr6:0 (2.53) BS13 II0 N/A N/A N/A N/A
    456677 8xr6:0 (2.53) BS14 II0 N/A N/A N/A N/A
    456678 8xr6:0 (2.53) BS15 II0 N/A N/A N/A N/A
    456679 8xr6:0 (2.53) BS16 II0 N/A N/A N/A N/A
    456680 8xr6:0 (2.53) BS17 CLA N/A N/A N/A N/A
    456681 8xr6:1 (2.53) BS01 CLA N/A N/A N/A N/A
    456682 8xr6:1 (2.53) BS02 CLA N/A N/A N/A N/A
    456683 8xr6:1 (2.53) BS03 CLA N/A N/A N/A N/A
    456684 8xr6:1 (2.53) BS04 CLA N/A N/A N/A N/A
    456685 8xr6:1 (2.53) BS05 CLA N/A N/A N/A N/A
    456686 8xr6:1 (2.53) BS06 CLA N/A N/A N/A N/A
    456687 8xr6:1 (2.53) BS07 CLA N/A N/A N/A N/A
    456688 8xr6:1 (2.53) BS08 CLA N/A N/A N/A N/A
    456689 8xr6:1 (2.53) BS09 CLA N/A N/A N/A N/A
    456690 8xr6:1 (2.53) BS10 KC2 N/A N/A N/A N/A
    456691 8xr6:1 (2.53) BS11 KC2 N/A N/A N/A N/A
    456692 8xr6:1 (2.53) BS12 8CT N/A N/A N/A N/A
    456693 8xr6:1 (2.53) BS13 II0 N/A N/A N/A N/A
    456694 8xr6:1 (2.53) BS14 II0 N/A N/A N/A N/A
    456695 8xr6:1 (2.53) BS15 II0 N/A N/A N/A N/A
    456696 8xr6:1 (2.53) BS16 II0 N/A N/A N/A N/A
    456697 8xr6:1 (2.53) BS17 CLA N/A N/A N/A N/A
    456698 8xr6:2 (2.53) BS01 CLA N/A N/A N/A N/A
    456699 8xr6:2 (2.53) BS02 CLA N/A N/A N/A N/A
    456700 8xr6:2 (2.53) BS03 8CT N/A N/A N/A N/A
    456701 8xr6:2 (2.53) BS04 II0 N/A N/A N/A N/A
    456702 8xr6:2 (2.53) BS05 CLA N/A N/A N/A N/A
    456703 8xr6:2 (2.53) BS06 CLA N/A N/A N/A N/A
    456704 8xr6:2 (2.53) BS07 CLA N/A N/A N/A N/A
    456705 8xr6:2 (2.53) BS08 CLA N/A N/A N/A N/A
    456706 8xr6:2 (2.53) BS09 CLA N/A N/A N/A N/A
    456707 8xr6:2 (2.53) BS10 CLA N/A N/A N/A N/A
    456708 8xr6:2 (2.53) BS11 CLA N/A N/A N/A N/A
    456709 8xr6:2 (2.53) BS12 CLA N/A N/A N/A N/A
    456710 8xr6:2 (2.53) BS13 KC2 N/A N/A N/A N/A
    456711 8xr6:2 (2.53) BS14 CLA N/A N/A N/A N/A
    456712 8xr6:2 (2.53) BS15 II0 N/A N/A N/A N/A
    456713 8xr6:2 (2.53) BS16 II0 N/A N/A N/A N/A
    456714 8xr6:2 (2.53) BS17 II0 N/A N/A N/A N/A
    456715 8xr6:2 (2.53) BS18 IHT N/A N/A N/A N/A
    456716 8xr6:2 (2.53) BS19 II0 N/A N/A N/A N/A
    456717 8xr6:2 (2.53) BS20 CLA N/A N/A N/A N/A
    456718 8xr6:2 (2.53) BS21 CLA N/A N/A N/A N/A
    456719 8xr6:2 (2.53) BS22 II0 N/A N/A N/A N/A
    456720 8xr6:2 (2.53) BS23 CLA N/A N/A N/A N/A
    456721 8xr6:2 (2.53) BS24 CLA N/A N/A N/A N/A
    456722 8xr6:2 (2.53) BS25 CLA N/A N/A N/A N/A
    456723 8xr6:3 (2.53) BS01 CLA N/A N/A N/A N/A
    456724 8xr6:3 (2.53) BS02 IHT N/A N/A N/A N/A
    456725 8xr6:3 (2.53) BS03 II0 N/A N/A N/A N/A
    456726 8xr6:3 (2.53) BS04 CLA N/A N/A N/A N/A
    456727 8xr6:3 (2.53) BS05 CLA N/A N/A N/A N/A
    456728 8xr6:3 (2.53) BS06 CLA N/A N/A N/A N/A
    456729 8xr6:3 (2.53) BS07 CLA N/A N/A N/A N/A
    456730 8xr6:3 (2.53) BS08 CLA N/A N/A N/A N/A
    456731 8xr6:3 (2.53) BS09 CLA N/A N/A N/A N/A
    456732 8xr6:3 (2.53) BS10 CLA N/A N/A N/A N/A
    456733 8xr6:3 (2.53) BS11 CLA N/A N/A N/A N/A
    456734 8xr6:3 (2.53) BS12 KC2 N/A N/A N/A N/A
    456735 8xr6:3 (2.53) BS13 CLA N/A N/A N/A N/A
    456736 8xr6:3 (2.53) BS14 CLA N/A N/A N/A N/A
    456737 8xr6:3 (2.53) BS15 CLA N/A N/A N/A N/A
    456738 8xr6:3 (2.53) BS16 CLA N/A N/A N/A N/A
    456739 8xr6:3 (2.53) BS17 II0 N/A N/A N/A N/A
    456740 8xr6:3 (2.53) BS18 II0 N/A N/A N/A N/A
    456741 8xr6:3 (2.53) BS19 II0 N/A N/A N/A N/A
    456742 8xr6:3 (2.53) BS20 II0 N/A N/A N/A N/A
    456743 8xr6:3 (2.53) BS21 IHT N/A N/A N/A N/A
    456744 8xr6:4 (2.53) BS01 CLA N/A N/A N/A N/A
    456745 8xr6:4 (2.53) BS02 CLA N/A N/A N/A N/A
    456746 8xr6:4 (2.53) BS03 CLA N/A N/A N/A N/A
    456747 8xr6:4 (2.53) BS04 CLA N/A N/A N/A N/A
    456748 8xr6:4 (2.53) BS05 KC2 N/A N/A N/A N/A
    456749 8xr6:4 (2.53) BS06 CLA N/A N/A N/A N/A
    456750 8xr6:4 (2.53) BS07 CLA N/A N/A N/A N/A
    456751 8xr6:4 (2.53) BS08 CLA N/A N/A N/A N/A
    456752 8xr6:4 (2.53) BS09 CLA N/A N/A N/A N/A
    456753 8xr6:4 (2.53) BS10 CLA N/A N/A N/A N/A
    456754 8xr6:4 (2.53) BS11 8CT N/A N/A N/A N/A
    456755 8xr6:4 (2.53) BS12 II0 N/A N/A N/A N/A
    456756 8xr6:4 (2.53) BS13 II0 N/A N/A N/A N/A
    456757 8xr6:4 (2.53) BS14 II0 N/A N/A N/A N/A
    456758 8xr6:4 (2.53) BS15 II0 N/A N/A N/A N/A
    456759 8xr6:4 (2.53) BS16 CLA N/A N/A N/A N/A
    456760 8xr6:4 (2.53) BS17 II0 N/A N/A N/A N/A
    456761 8xr6:4 (2.53) BS18 CLA N/A N/A N/A N/A
    456762 8xr6:5 (2.53) BS01 CLA N/A N/A N/A N/A
    456763 8xr6:5 (2.53) BS02 II0 N/A N/A N/A N/A
    456764 8xr6:5 (2.53) BS03 CLA N/A N/A N/A N/A
    456765 8xr6:5 (2.53) BS04 CLA N/A N/A N/A N/A
    456766 8xr6:5 (2.53) BS05 CLA N/A N/A N/A N/A
    456767 8xr6:5 (2.53) BS06 CLA N/A N/A N/A N/A
    456768 8xr6:5 (2.53) BS07 CLA N/A N/A N/A N/A
    456769 8xr6:5 (2.53) BS08 CLA N/A N/A N/A N/A
    456770 8xr6:5 (2.53) BS09 CLA N/A N/A N/A N/A
    456771 8xr6:5 (2.53) BS10 CLA N/A N/A N/A N/A
    456772 8xr6:5 (2.53) BS11 KC2 N/A N/A N/A N/A
    456773 8xr6:5 (2.53) BS12 CLA N/A N/A N/A N/A
    456774 8xr6:5 (2.53) BS13 CLA N/A N/A N/A N/A
    456775 8xr6:5 (2.53) BS14 II0 N/A N/A N/A N/A
    456776 8xr6:5 (2.53) BS15 II0 N/A N/A N/A N/A
    456777 8xr6:5 (2.53) BS16 II0 N/A N/A N/A N/A
    456778 8xr6:5 (2.53) BS17 IHT N/A N/A N/A N/A
    456779 8xr6:5 (2.53) BS18 II0 N/A N/A N/A N/A
    456780 8xr6:6 (2.53) BS01 CLA N/A N/A N/A N/A
    456781 8xr6:6 (2.53) BS02 II0 N/A N/A N/A N/A
    456782 8xr6:6 (2.53) BS03 CLA N/A N/A N/A N/A
    456783 8xr6:6 (2.53) BS04 CLA N/A N/A N/A N/A
    456784 8xr6:6 (2.53) BS05 CLA N/A N/A N/A N/A
    456785 8xr6:6 (2.53) BS06 CLA N/A N/A N/A N/A
    456786 8xr6:6 (2.53) BS07 CLA N/A N/A N/A N/A
    456787 8xr6:6 (2.53) BS08 CLA N/A N/A N/A N/A
    456788 8xr6:6 (2.53) BS09 CLA N/A N/A N/A N/A
    456789 8xr6:6 (2.53) BS10 CLA N/A N/A N/A N/A
    456790 8xr6:6 (2.53) BS11 CLA N/A N/A N/A N/A
    456791 8xr6:6 (2.53) BS12 KC2 N/A N/A N/A N/A
    456792 8xr6:6 (2.53) BS13 CLA N/A N/A N/A N/A
    456793 8xr6:6 (2.53) BS14 CLA N/A N/A N/A N/A
    456794 8xr6:6 (2.53) BS15 II0 N/A N/A N/A N/A
    456795 8xr6:6 (2.53) BS16 II0 N/A N/A N/A N/A
    456796 8xr6:6 (2.53) BS17 II0 N/A N/A N/A N/A
    456797 8xr6:6 (2.53) BS18 II0 N/A N/A N/A N/A
    456798 8xr6:6 (2.53) BS19 IHT N/A N/A N/A N/A
    456799 8xr6:6 (2.53) BS20 CLA N/A N/A N/A N/A
    456800 8xr6:7 (2.53) BS01 CLA N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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