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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    456001 8xkf:D (2.5) BS04 CDP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    456002 8xkf:E (2.5) BS01 CTP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    456003 8xkf:E (2.5) BS02 CDP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    456004 8xkf:E (2.5) BS03 C5P 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    456005 8xkf:F (2.5) BS01 C5P 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    456006 8xkf:F (2.5) BS02 CTP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    456007 8xkf:F (2.5) BS03 C5P 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    456008 8xkl:0 (2.84) BS01 CLA N/A N/A N/A 38806516
    456009 8xkl:0 (2.84) BS02 CLA N/A N/A N/A 38806516
    456010 8xkl:0 (2.84) BS03 CLA N/A N/A N/A 38806516
    456011 8xkl:0 (2.84) BS04 CLA N/A N/A N/A 38806516
    456012 8xkl:0 (2.84) BS05 CLA N/A N/A N/A 38806516
    456013 8xkl:0 (2.84) BS06 CLA N/A N/A N/A 38806516
    456014 8xkl:0 (2.84) BS07 CLA N/A N/A N/A 38806516
    456015 8xkl:0 (2.84) BS08 CLA N/A N/A N/A 38806516
    456016 8xkl:0 (2.84) BS09 CLA N/A N/A N/A 38806516
    456017 8xkl:0 (2.84) BS10 KC2 N/A N/A N/A 38806516
    456018 8xkl:0 (2.84) BS11 CLA N/A N/A N/A 38806516
    456019 8xkl:0 (2.84) BS12 CLA N/A N/A N/A 38806516
    456020 8xkl:0 (2.84) BS13 CLA N/A N/A N/A 38806516
    456021 8xkl:0 (2.84) BS14 IHT N/A N/A N/A 38806516
    456022 8xkl:0 (2.84) BS15 II0 N/A N/A N/A 38806516
    456023 8xkl:0 (2.84) BS16 II0 N/A N/A N/A 38806516
    456024 8xkl:0 (2.84) BS17 IHT N/A N/A N/A 38806516
    456025 8xkl:0 (2.84) BS18 II0 N/A N/A N/A 38806516
    456026 8xkl:0 (2.84) BS19 II0 N/A N/A N/A 38806516
    456027 8xkl:0 (2.84) BS20 CLA N/A N/A N/A 38806516
    456028 8xkl:7 (2.84) BS01 CLA N/A N/A N/A 38806516
    456029 8xkl:7 (2.84) BS02 CLA N/A N/A N/A 38806516
    456030 8xkl:7 (2.84) BS03 CLA N/A N/A N/A 38806516
    456031 8xkl:7 (2.84) BS04 CLA N/A N/A N/A 38806516
    456032 8xkl:7 (2.84) BS05 CLA N/A N/A N/A 38806516
    456033 8xkl:7 (2.84) BS06 CLA N/A N/A N/A 38806516
    456034 8xkl:7 (2.84) BS07 CLA N/A N/A N/A 38806516
    456035 8xkl:7 (2.84) BS08 CLA N/A N/A N/A 38806516
    456036 8xkl:7 (2.84) BS09 CLA N/A N/A N/A 38806516
    456037 8xkl:7 (2.84) BS10 KC2 N/A N/A N/A 38806516
    456038 8xkl:7 (2.84) BS11 CLA N/A N/A N/A 38806516
    456039 8xkl:7 (2.84) BS12 CLA N/A N/A N/A 38806516
    456040 8xkl:7 (2.84) BS13 CLA N/A N/A N/A 38806516
    456041 8xkl:7 (2.84) BS14 II0 N/A N/A N/A 38806516
    456042 8xkl:7 (2.84) BS15 II3 N/A N/A N/A 38806516
    456043 8xkl:7 (2.84) BS16 II0 N/A N/A N/A 38806516
    456044 8xkl:7 (2.84) BS17 II0 N/A N/A N/A 38806516
    456045 8xkl:7 (2.84) BS18 IHT N/A N/A N/A 38806516
    456046 8xkl:7 (2.84) BS19 II0 N/A N/A N/A 38806516
    456047 8xkl:8 (2.84) BS01 CLA N/A N/A N/A 38806516
    456048 8xkl:8 (2.84) BS02 II0 N/A N/A N/A 38806516
    456049 8xkl:8 (2.84) BS03 CLA N/A N/A N/A 38806516
    456050 8xkl:8 (2.84) BS04 CLA N/A N/A N/A 38806516
    456051 8xkl:8 (2.84) BS05 CLA N/A N/A N/A 38806516
    456052 8xkl:8 (2.84) BS06 CLA N/A N/A N/A 38806516
    456053 8xkl:8 (2.84) BS07 CLA N/A N/A N/A 38806516
    456054 8xkl:8 (2.84) BS08 CLA N/A N/A N/A 38806516
    456055 8xkl:8 (2.84) BS09 CLA N/A N/A N/A 38806516
    456056 8xkl:8 (2.84) BS10 CLA N/A N/A N/A 38806516
    456057 8xkl:8 (2.84) BS11 KC2 N/A N/A N/A 38806516
    456058 8xkl:8 (2.84) BS12 CLA N/A N/A N/A 38806516
    456059 8xkl:8 (2.84) BS13 CLA N/A N/A N/A 38806516
    456060 8xkl:8 (2.84) BS14 II0 N/A N/A N/A 38806516
    456061 8xkl:8 (2.84) BS15 II0 N/A N/A N/A 38806516
    456062 8xkl:8 (2.84) BS16 II0 N/A N/A N/A 38806516
    456063 8xkl:8 (2.84) BS17 IHT N/A N/A N/A 38806516
    456064 8xkl:8 (2.84) BS18 II0 N/A N/A N/A 38806516
    456065 8xkl:8 (2.84) BS19 CLA N/A N/A N/A 38806516
    456066 8xkl:9 (2.84) BS01 CLA N/A N/A N/A 38806516
    456067 8xkl:9 (2.84) BS02 II0 N/A N/A N/A 38806516
    456068 8xkl:9 (2.84) BS03 CLA N/A N/A N/A 38806516
    456069 8xkl:9 (2.84) BS04 CLA N/A N/A N/A 38806516
    456070 8xkl:9 (2.84) BS05 CLA N/A N/A N/A 38806516
    456071 8xkl:9 (2.84) BS06 CLA N/A N/A N/A 38806516
    456072 8xkl:9 (2.84) BS07 CLA N/A N/A N/A 38806516
    456073 8xkl:9 (2.84) BS08 CLA N/A N/A N/A 38806516
    456074 8xkl:9 (2.84) BS09 CLA N/A N/A N/A 38806516
    456075 8xkl:9 (2.84) BS10 CLA N/A N/A N/A 38806516
    456076 8xkl:9 (2.84) BS11 CLA N/A N/A N/A 38806516
    456077 8xkl:9 (2.84) BS12 CLA N/A N/A N/A 38806516
    456078 8xkl:9 (2.84) BS13 II0 N/A N/A N/A 38806516
    456079 8xkl:9 (2.84) BS14 II0 N/A N/A N/A 38806516
    456080 8xkl:9 (2.84) BS15 II0 N/A N/A N/A 38806516
    456081 8xkl:9 (2.84) BS16 8CT N/A N/A N/A 38806516
    456082 8xkl:G (2.84) BS01 CLA N/A N/A N/A 38806516
    456083 8xkl:P (2.84) BS01 CLA N/A N/A N/A 38806516
    456084 8xkl:P (2.84) BS02 CLA N/A N/A N/A 38806516
    456085 8xkl:P (2.84) BS03 CLA N/A N/A N/A 38806516
    456086 8xkl:P (2.84) BS04 CLA N/A N/A N/A 38806516
    456087 8xkl:P (2.84) BS05 KC2 N/A N/A N/A 38806516
    456088 8xkl:P (2.84) BS06 CLA N/A N/A N/A 38806516
    456089 8xkl:P (2.84) BS07 CLA N/A N/A N/A 38806516
    456090 8xkl:P (2.84) BS08 CLA N/A N/A N/A 38806516
    456091 8xkl:P (2.84) BS09 KC2 N/A N/A N/A 38806516
    456092 8xkl:P (2.84) BS10 CLA N/A N/A N/A 38806516
    456093 8xkl:P (2.84) BS11 II0 N/A N/A N/A 38806516
    456094 8xkl:P (2.84) BS12 II3 N/A N/A N/A 38806516
    456095 8xkl:P (2.84) BS13 II0 N/A N/A N/A 38806516
    456096 8xkl:P (2.84) BS14 8CT N/A N/A N/A 38806516
    456097 8xkl:P (2.84) BS15 II0 N/A N/A N/A 38806516
    456098 8xkl:p (2.84) BS01 CLA N/A N/A N/A 38806516
    456099 8xkl:p (2.84) BS02 II0 N/A N/A N/A 38806516
    456100 8xkl:p (2.84) BS03 CLA N/A N/A N/A 38806516
    456101 8xkl:p (2.84) BS04 II0 N/A N/A N/A 38806516
    456102 8xkl:p (2.84) BS05 CLA N/A N/A N/A 38806516
    456103 8xkl:p (2.84) BS06 CLA N/A N/A N/A 38806516
    456104 8xkl:p (2.84) BS07 CLA N/A N/A N/A 38806516
    456105 8xkl:p (2.84) BS08 CLA N/A N/A N/A 38806516
    456106 8xkl:p (2.84) BS09 CLA N/A N/A N/A 38806516
    456107 8xkl:p (2.84) BS10 CLA N/A N/A N/A 38806516
    456108 8xkl:p (2.84) BS11 CLA N/A N/A N/A 38806516
    456109 8xkl:p (2.84) BS12 CLA N/A N/A N/A 38806516
    456110 8xkl:p (2.84) BS13 CLA N/A N/A N/A 38806516
    456111 8xkl:p (2.84) BS14 KC2 N/A N/A N/A 38806516
    456112 8xkl:p (2.84) BS15 CLA N/A N/A N/A 38806516
    456113 8xkl:p (2.84) BS16 CLA N/A N/A N/A 38806516
    456114 8xkl:p (2.84) BS17 II0 N/A N/A N/A 38806516
    456115 8xkl:p (2.84) BS18 II0 N/A N/A N/A 38806516
    456116 8xkl:p (2.84) BS19 II0 N/A N/A N/A 38806516
    456117 8xkl:p (2.84) BS20 IHT N/A N/A N/A 38806516
    456118 8xkl:p (2.84) BS21 CLA N/A N/A N/A 38806516
    456119 8xkl:s (2.84) BS01 CLA N/A N/A N/A 38806516
    456120 8xkl:s (2.84) BS02 CLA N/A N/A N/A 38806516
    456121 8xkl:s (2.84) BS03 CLA N/A N/A N/A 38806516
    456122 8xkl:s (2.84) BS04 CLA N/A N/A N/A 38806516
    456123 8xkl:s (2.84) BS05 CLA N/A N/A N/A 38806516
    456124 8xkl:s (2.84) BS06 CLA N/A N/A N/A 38806516
    456125 8xku:A (3.2) BS02 ATP N/A N/A F4KF14 39197452
    456126 8xku:B (3.2) BS03 ATP N/A N/A Q9SAJ3 39197452
    456127 8xku:F (3.2) BS01 ATP N/A N/A A8MPR5 39197452
    456128 8xlm:D (3.22) BS01 MAN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38961765
    456129 8xln:D (3.78) BS01 MAN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38961765
    456130 8xlo:A (2.36) BS01 A1LVQ 2.7.10.1 GO:0004672 ... P11362 38432058
    456131 8xlo:B (2.36) BS01 A1LVQ 2.7.10.1 GO:0004672 ... P11362 38432058
    456132 8xlp:1 (2.57) BS01 II0 N/A N/A N/A N/A
    456133 8xlp:1 (2.57) BS02 CLA N/A N/A N/A N/A
    456134 8xlp:1 (2.57) BS03 CLA N/A N/A N/A N/A
    456135 8xlp:1 (2.57) BS04 CLA N/A N/A N/A N/A
    456136 8xlp:1 (2.57) BS05 CLA N/A N/A N/A N/A
    456137 8xlp:1 (2.57) BS06 KC2 N/A N/A N/A N/A
    456138 8xlp:1 (2.57) BS07 CLA N/A N/A N/A N/A
    456139 8xlp:1 (2.57) BS08 CLA N/A N/A N/A N/A
    456140 8xlp:1 (2.57) BS09 CLA N/A N/A N/A N/A
    456141 8xlp:1 (2.57) BS10 CLA N/A N/A N/A N/A
    456142 8xlp:1 (2.57) BS11 KC2 N/A N/A N/A N/A
    456143 8xlp:1 (2.57) BS12 KC2 N/A N/A N/A N/A
    456144 8xlp:1 (2.57) BS13 KC2 N/A N/A N/A N/A
    456145 8xlp:1 (2.57) BS14 CLA N/A N/A N/A N/A
    456146 8xlp:1 (2.57) BS15 CLA N/A N/A N/A N/A
    456147 8xlp:1 (2.57) BS16 II0 N/A N/A N/A N/A
    456148 8xlp:1 (2.57) BS17 II0 N/A N/A N/A N/A
    456149 8xlp:1 (2.57) BS18 II0 N/A N/A N/A N/A
    456150 8xlp:1 (2.57) BS19 II0 N/A N/A N/A N/A
    456151 8xlp:1 (2.57) BS20 IHT N/A N/A N/A N/A
    456152 8xlp:2 (2.57) BS01 CLA N/A N/A N/A N/A
    456153 8xlp:2 (2.57) BS02 CLA N/A N/A N/A N/A
    456154 8xlp:2 (2.57) BS03 CLA N/A N/A N/A N/A
    456155 8xlp:2 (2.57) BS04 CLA N/A N/A N/A N/A
    456156 8xlp:2 (2.57) BS05 CLA N/A N/A N/A N/A
    456157 8xlp:2 (2.57) BS06 CLA N/A N/A N/A N/A
    456158 8xlp:2 (2.57) BS07 CLA N/A N/A N/A N/A
    456159 8xlp:2 (2.57) BS08 CLA N/A N/A N/A N/A
    456160 8xlp:2 (2.57) BS09 CLA N/A N/A N/A N/A
    456161 8xlp:2 (2.57) BS10 KC2 N/A N/A N/A N/A
    456162 8xlp:2 (2.57) BS11 CLA N/A N/A N/A N/A
    456163 8xlp:2 (2.57) BS12 CLA N/A N/A N/A N/A
    456164 8xlp:2 (2.57) BS13 II0 N/A N/A N/A N/A
    456165 8xlp:2 (2.57) BS14 II0 N/A N/A N/A N/A
    456166 8xlp:2 (2.57) BS15 II0 N/A N/A N/A N/A
    456167 8xlp:2 (2.57) BS16 II0 N/A N/A N/A N/A
    456168 8xlp:2 (2.57) BS17 IHT N/A N/A N/A N/A
    456169 8xlp:2 (2.57) BS18 II0 N/A N/A N/A N/A
    456170 8xlp:3 (2.57) BS01 CLA N/A N/A N/A N/A
    456171 8xlp:3 (2.57) BS02 CLA N/A N/A N/A N/A
    456172 8xlp:3 (2.57) BS03 CLA N/A N/A N/A N/A
    456173 8xlp:3 (2.57) BS04 CLA N/A N/A N/A N/A
    456174 8xlp:3 (2.57) BS05 KC2 N/A N/A N/A N/A
    456175 8xlp:3 (2.57) BS06 CLA N/A N/A N/A N/A
    456176 8xlp:3 (2.57) BS07 CLA N/A N/A N/A N/A
    456177 8xlp:3 (2.57) BS08 CLA N/A N/A N/A N/A
    456178 8xlp:3 (2.57) BS09 CLA N/A N/A N/A N/A
    456179 8xlp:3 (2.57) BS10 CLA N/A N/A N/A N/A
    456180 8xlp:3 (2.57) BS11 CLA N/A N/A N/A N/A
    456181 8xlp:3 (2.57) BS12 II0 N/A N/A N/A N/A
    456182 8xlp:3 (2.57) BS13 II0 N/A N/A N/A N/A
    456183 8xlp:3 (2.57) BS14 II0 N/A N/A N/A N/A
    456184 8xlp:3 (2.57) BS15 II0 N/A N/A N/A N/A
    456185 8xlp:3 (2.57) BS16 WVN N/A N/A N/A N/A
    456186 8xlp:4 (2.57) BS01 CLA N/A N/A N/A N/A
    456187 8xlp:4 (2.57) BS02 CLA N/A N/A N/A N/A
    456188 8xlp:4 (2.57) BS03 CLA N/A N/A N/A N/A
    456189 8xlp:4 (2.57) BS04 KC2 N/A N/A N/A N/A
    456190 8xlp:4 (2.57) BS05 CLA N/A N/A N/A N/A
    456191 8xlp:4 (2.57) BS06 CLA N/A N/A N/A N/A
    456192 8xlp:4 (2.57) BS07 CLA N/A N/A N/A N/A
    456193 8xlp:4 (2.57) BS08 CLA N/A N/A N/A N/A
    456194 8xlp:4 (2.57) BS09 KC2 N/A N/A N/A N/A
    456195 8xlp:4 (2.57) BS10 CLA N/A N/A N/A N/A
    456196 8xlp:4 (2.57) BS11 CLA N/A N/A N/A N/A
    456197 8xlp:4 (2.57) BS12 II0 N/A N/A N/A N/A
    456198 8xlp:4 (2.57) BS13 II0 N/A N/A N/A N/A
    456199 8xlp:4 (2.57) BS14 II0 N/A N/A N/A N/A
    456200 8xlp:4 (2.57) BS15 II0 N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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