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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    455801 8xdt:A (2.65) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    455802 8xdt:B (2.65) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    455803 8xdu:A (1.92) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    455804 8xdu:B (1.92) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    455805 8xdv:A (2.32) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    455806 8xdv:B (2.32) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    455807 8xdy:A (2.2) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    455808 8xdy:B (2.2) BS01 H6N N/A N/A A0A6B9TNK2 N/A
    455809 8xdy:B (2.2) BS03 SAH N/A N/A A0A6B9TNK2 N/A
    455810 8xe0:A (2.2) BS01 H6N N/A N/A A0A6B9TNK2 N/A
    455811 8xe0:A (2.2) BS03 SAH N/A N/A A0A6B9TNK2 N/A
    455812 8xe0:B (2.2) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    455813 8xe2:A (2.43) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    455814 8xe2:A (2.43) BS03 H6N N/A N/A A0A6B9TNK2 N/A
    455815 8xe2:B (2.43) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    455816 8xe2:B (2.43) BS03 H6N N/A N/A A0A6B9TNK2 N/A
    455817 8xe2:C (2.43) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    455818 8xe2:D (2.43) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    455819 8xe3:A (1.72) BS02 SAH N/A N/A A0A077EWA5 N/A
    455820 8xe3:B (1.72) BS02 SAH N/A N/A A0A077EWA5 N/A
    455821 8xe4:A (1.96) BS02 SAH N/A N/A A0A077EWA5 N/A
    455822 8xe4:B (1.96) BS02 SAH N/A N/A A0A077EWA5 N/A
    455823 8xe4:C (1.96) BS01 A1LU2 N/A N/A A0A077EWA5 N/A
    455824 8xe4:C (1.96) BS03 SAH N/A N/A A0A077EWA5 N/A
    455825 8xe4:D (1.96) BS01 A1LU2 N/A N/A A0A077EWA5 N/A
    455826 8xe4:D (1.96) BS03 SAH N/A N/A A0A077EWA5 N/A
    455827 8xe5:A (2.07) BS02 SAH N/A N/A A0A077EWA5 N/A
    455828 8xe5:A (2.07) BS03 H6N N/A N/A A0A077EWA5 N/A
    455829 8xe5:B (2.07) BS02 SAH N/A N/A A0A077EWA5 N/A
    455830 8xe5:C (2.07) BS02 SAH N/A N/A A0A077EWA5 N/A
    455831 8xe5:C (2.07) BS03 H6N N/A N/A A0A077EWA5 N/A
    455832 8xe5:D (2.07) BS02 SAH N/A N/A A0A077EWA5 N/A
    455833 8xej:X (3.66) BS01 DLP ? GO:0002513 ... Q9H6D3 38364890
    455834 8xfc:D (3.89) BS01 ATP N/A N/A I6Y482 N/A
    455835 8xfc:D (3.89) BS02 ATP N/A N/A I6Y482 N/A
    455836 8xfd:A (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    455837 8xfd:A (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    455838 8xfd:B (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    455839 8xfd:B (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    455840 8xfd:C (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    455841 8xfd:C (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    455842 8xfd:D (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    455843 8xfd:D (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    455844 8xfm:A (2.6) BS01 A1LU6 2.7.11.1 GO:0004672 ... Q9HBH9 N/A
    455845 8xfq:A (2.25) BS01 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    455846 8xfq:A (2.25) BS02 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    455847 8xfq:A (2.25) BS03 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    455848 8xfq:A (2.25) BS04 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    455849 8xfq:A (2.25) BS05 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    455850 8xfr:A (2.0) BS01 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    455851 8xfr:A (2.0) BS02 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    455852 8xfr:A (2.0) BS03 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    455853 8xfr:A (2.0) BS04 BEM 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    455854 8xfv:A (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    455855 8xfv:B (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    455856 8xfv:C (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    455857 8xfv:D (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    455858 8xfv:E (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    455859 8xfv:F (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    455860 8xfv:G (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    455861 8xfv:H (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    455862 8xfv:I (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    455863 8xfv:J (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    455864 8xfv:X (3.13) BS02 A1D46 2.3.2.5 N/A Q9NXS2 38817193
    455865 8xfy:A (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    455866 8xfy:B (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    455867 8xfy:C (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    455868 8xfy:D (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    455869 8xfy:E (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    455870 8xfy:F (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    455871 8xfy:G (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    455872 8xfy:H (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    455873 8xfy:I (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    455874 8xfy:J (3.2) BS01 A1LU8 2.7.11.1 GO:0004672 ... P51812 N/A
    455875 8xga:A (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    455876 8xga:B (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    455877 8xga:C (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    455878 8xga:D (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    455879 8xga:E (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    455880 8xga:F (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    455881 8xga:G (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    455882 8xga:H (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    455883 8xga:I (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    455884 8xga:J (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    455885 8xga:K (3.537) BS02 A1D47 2.3.2.5 N/A Q9NXS2 38817193
    455886 8xgb:B (3.24) BS02 A1D49 2.3.2.5 GO:0005515 ... Q16769 38817193
    455887 8xgc:2 (3.7) BS03 ADP 3.6.4.12 GO:0003677 ... N/A 38448592
    455888 8xgc:2 (3.7) BS04 ADP 3.6.4.12 GO:0003677 ... N/A 38448592
    455889 8xgc:3 (3.7) BS03 ADP 3.6.4.12 GO:0000727 ... P24279 38448592
    455890 8xgc:3 (3.7) BS04 ADP 3.6.4.12 GO:0000727 ... P24279 38448592
    455891 8xgc:4 (3.7) BS03 ADP 3.6.4.12 GO:0000727 ... P30665 38448592
    455892 8xgc:5 (3.7) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 38448592
    455893 8xgc:5 (3.7) BS04 ADP 3.6.4.12 GO:0000727 ... P29496 38448592
    455894 8xgc:6 (3.7) BS02 ADP 3.6.4.12 GO:0000727 ... P53091 38448592
    455895 8xgc:6 (3.7) BS04 ADP 3.6.4.12 GO:0000727 ... P53091 38448592
    455896 8xgc:7 (3.7) BS03 ADP 3.6.4.12 GO:0003677 ... N/A 38448592
    455897 8xgk:A (1.32) BS01 A1LVB ? N/A Q14145 38408347
    455898 8xgm:A (3.29) BS01 CLR N/A N/A P46091 N/A
    455899 8xgt:A (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    455900 8xgt:B (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    455901 8xgt:C (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    455902 8xgt:D (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    455903 8xgt:E (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    455904 8xgt:F (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    455905 8xgt:F (2.813) BS03 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    455906 8xgt:G (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    455907 8xgt:H (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    455908 8xgt:I (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    455909 8xgt:J (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    455910 8xgt:K (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    455911 8xgt:L (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    455912 8xgv:A (1.42) BS01 A1LVC ? N/A Q14145 38408347
    455913 8xgy:A (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455914 8xgy:A (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455915 8xgy:B (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455916 8xgy:C (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455917 8xgy:C (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455918 8xgy:D (2.81) BS01 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455919 8xgy:D (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455920 8xgy:E (2.81) BS01 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455921 8xgy:E (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455922 8xgy:F (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455923 8xgy:F (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455924 8xgy:G (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455925 8xgy:H (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455926 8xgy:H (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455927 8xgy:I (2.81) BS01 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455928 8xgy:I (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455929 8xgy:J (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455930 8xgy:K (2.81) BS01 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455931 8xgy:K (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455932 8xgy:L (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    455933 8xha:A (2.27) BS01 PGU 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455934 8xha:A (2.27) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455935 8xha:B (2.27) BS01 PGU 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455936 8xha:B (2.27) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455937 8xhd:A (2.7) BS01 PGU 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455938 8xhd:A (2.7) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455939 8xhd:B (2.7) BS01 PGU 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455940 8xhd:B (2.7) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455941 8xhk:A (2.79) BS01 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455942 8xhk:A (2.79) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455943 8xhk:B (2.79) BS01 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455944 8xhk:B (2.79) BS02 PLR 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455945 8xhk:C (2.79) BS01 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455946 8xhk:C (2.79) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455947 8xhk:D (2.79) BS01 PLR 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455948 8xhk:D (2.79) BS02 PLR 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455949 8xhk:E (2.79) BS01 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455950 8xhk:E (2.79) BS02 PLR 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455951 8xhk:F (2.79) BS01 PLR 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455952 8xhk:F (2.79) BS02 PLR 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    455953 8xhr:A (2.1) BS01 CTP ? GO:0000166 ... P96356 38485701
    455954 8xhr:B (2.1) BS01 CTP ? GO:0000166 ... P96356 38485701
    455955 8xhr:C (2.1) BS01 CTP ? GO:0000166 ... P96356 38485701
    455956 8xi9:A (1.85) BS01 RAP N/A N/A P42345
    P62942
    39031920
    455957 8xia:A (1.9) BS01 XLS 5.3.1.5 GO:0000287 ... P24300 2734296
    455958 8xim:A (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    455959 8xim:B (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    455960 8xim:C (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    455961 8xim:D (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    455962 8xio:A (2.65) BS01 A1D5D N/A GO:0004930 ... P30872 N/A
    455963 8xiy:A (2.09) BS01 PLP ? GO:0003824 ... Q0C8G1 N/A
    455964 8xiy:B (2.09) BS01 PLP ? GO:0003824 ... Q0C8G1 N/A
    455965 8xj6:A (3.32) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    455966 8xj6:B (3.32) BS01 AN2 ? GO:0004386 ... A0A7H0DN89 38914567
    455967 8xj6:C (3.32) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    455968 8xj6:D (3.32) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    455969 8xj6:E (3.32) BS01 AN2 ? GO:0004386 ... A0A7H0DN89 38914567
    455970 8xj6:F (3.32) BS01 AN2 ? GO:0004386 ... A0A7H0DN89 38914567
    455971 8xj7:A (2.74) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    455972 8xj7:B (2.74) BS02 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    455973 8xj7:B (2.74) BS03 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    455974 8xj7:C (2.74) BS02 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    455975 8xj7:C (2.74) BS03 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    455976 8xj7:D (2.74) BS02 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    455977 8xj7:D (2.74) BS03 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    455978 8xj7:E (2.74) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    455979 8xj7:E (2.74) BS02 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    455980 8xj7:F (2.74) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    455981 8xj8:A (2.67) BS02 ANP 3.6.4.- N/A A0A7H0DN89 38914567
    455982 8xj8:B (2.67) BS02 ANP 3.6.4.- N/A A0A7H0DN89 38914567
    455983 8xj8:C (2.67) BS02 ANP 3.6.4.- N/A A0A7H0DN89 38914567
    455984 8xj8:C (2.67) BS03 ANP 3.6.4.- N/A A0A7H0DN89 38914567
    455985 8xj8:D (2.67) BS02 ANP 3.6.4.- N/A A0A7H0DN89 38914567
    455986 8xjj:A (2.1) BS01 A1LVJ N/A N/A Q07889 39087485
    455987 8xjk:R (2.63) BS01 A1D5A ? GO:0004930 ... P43088 38446662
    455988 8xjl:R (2.77) BS01 UGU ? GO:0004930 ... P43088 38446662
    455989 8xjm:R (2.85) BS01 7WT ? GO:0004930 ... P43088 38446662
    455990 8xjn:R (3.06) BS01 A1D5A ? GO:0001669 ... P21731 38446662
    455991 8xjo:R (3.11) BS01 PUC ? GO:0001669 ... P21731 38446662
    455992 8xkf:A (2.5) BS01 CTP 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    455993 8xkf:A (2.5) BS03 CDP 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    455994 8xkf:B (2.5) BS01 CTP 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    455995 8xkf:B (2.5) BS02 C5P 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    455996 8xkf:C (2.5) BS01 C5P 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    455997 8xkf:C (2.5) BS02 CTP 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    455998 8xkf:C (2.5) BS03 CDP 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    455999 8xkf:D (2.5) BS01 CTP 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721
    456000 8xkf:D (2.5) BS02 C5P 2.7.7.60
    4.6.1.12
    GO:0003824 ... O25664 38537721

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218