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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    455601 8x7r:I (3.0) BS01 Y9W N/A N/A P37840 39172784
    455602 8x7r:J (3.0) BS01 Y9W N/A N/A P37840 39172784
    455603 8x7r:J (3.0) BS02 Y9W N/A N/A P37840 39172784
    455604 8x7r:J (3.0) BS03 Y9W N/A N/A P37840 39172784
    455605 8x7u:A (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    455606 8x7u:B (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    455607 8x7u:C (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    455608 8x7u:C (3.57) BS02 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    455609 8x7u:D (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    455610 8x7u:D (3.57) BS02 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    455611 8x7u:E (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    455612 8x7u:E (3.57) BS02 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    455613 8x7u:F (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    455614 8x83:A (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    455615 8x83:B (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    455616 8x83:C (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    455617 8x83:D (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    455618 8x84:A (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    455619 8x84:B (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    455620 8x84:C (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    455621 8x84:D (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    455622 8x8g:A (2.27) BS01 BMA N/A N/A N/A 38938812
    455623 8x8g:A (2.27) BS02 MAN N/A N/A N/A 38938812
    455624 8x8g:A (2.27) BS03 MAN N/A N/A N/A 38938812
    455625 8x8g:A (2.27) BS04 SIA N/A N/A N/A 38938812
    455626 8x8g:A (2.27) BS05 NGO N/A N/A N/A 38938812
    455627 8x8k:A (2.1) BS01 GLC N/A N/A O95210 39236246
    455628 8x8k:A (2.1) BS02 GLC N/A N/A O95210 39236246
    455629 8x8k:A (2.1) BS03 GLC N/A N/A O95210 39236246
    455630 8x8k:A (2.1) BS04 GLC N/A N/A O95210 39236246
    455631 8x8k:B (2.1) BS01 GLC N/A N/A O95210 39236246
    455632 8x8k:B (2.1) BS02 GLC N/A N/A O95210 39236246
    455633 8x8k:C (2.1) BS01 GLC N/A N/A O95210 39236246
    455634 8x8k:C (2.1) BS02 GLC N/A N/A O95210 39236246
    455635 8x8k:C (2.1) BS03 GLC N/A N/A O95210 39236246
    455636 8x8k:C (2.1) BS04 GLC N/A N/A O95210 39236246
    455637 8x8k:D (2.1) BS01 GLC N/A N/A O95210 39236246
    455638 8x8k:D (2.1) BS02 GLC N/A N/A O95210 39236246
    455639 8x8k:D (2.1) BS03 GLC N/A N/A O95210 39236246
    455640 8x90:A (2.95) BS01 PS1 ? GO:0001540 ... O00555 38443561
    455641 8x90:A (2.95) BS02 CLR ? GO:0001540 ... O00555 38443561
    455642 8x90:A (2.95) BS03 PT5 ? GO:0001540 ... O00555 38443561
    455643 8x90:A (2.95) BS05 Y01 ? GO:0001540 ... O00555 38443561
    455644 8x90:A (2.95) BS06 CLR ? GO:0001540 ... O00555 38443561
    455645 8x90:A (2.95) BS07 Y01 ? GO:0001540 ... O00555 38443561
    455646 8x90:A (2.95) BS08 Y01 ? GO:0001540 ... O00555 38443561
    455647 8x90:A (2.95) BS09 CLR ? GO:0001540 ... O00555 38443561
    455648 8x90:A (2.95) BS10 CLR ? GO:0001540 ... O00555 38443561
    455649 8x91:A (3.11) BS02 CLR ? GO:0001540 ... O00555 38443561
    455650 8x91:A (3.11) BS03 PT5 ? GO:0001540 ... O00555 38443561
    455651 8x91:A (3.11) BS05 Y01 ? GO:0001540 ... O00555 38443561
    455652 8x91:A (3.11) BS06 CLR ? GO:0001540 ... O00555 38443561
    455653 8x91:A (3.11) BS07 Y01 ? GO:0001540 ... O00555 38443561
    455654 8x91:A (3.11) BS08 Y01 ? GO:0001540 ... O00555 38443561
    455655 8x91:A (3.11) BS09 CLR ? GO:0001540 ... O00555 38443561
    455656 8x91:A (3.11) BS10 CLR ? GO:0001540 ... O00555 38443561
    455657 8x93:A (2.92) BS01 CLR ? GO:0001540 ... O00555 38443561
    455658 8x93:A (2.92) BS02 PT5 ? GO:0001540 ... O00555 38443561
    455659 8x93:A (2.92) BS03 Y01 ? GO:0001540 ... O00555 38443561
    455660 8x93:A (2.92) BS04 CLR ? GO:0001540 ... O00555 38443561
    455661 8x93:A (2.92) BS05 CLR ? GO:0001540 ... O00555 38443561
    455662 8x93:A (2.92) BS06 Y01 ? GO:0001540 ... O00555 38443561
    455663 8x93:A (2.92) BS07 Y01 ? GO:0001540 ... O00555 38443561
    455664 8x93:A (2.92) BS08 CLR ? GO:0001540 ... O00555 38443561
    455665 8x93:A (2.92) BS09 CLR ? GO:0001540 ... O00555 38443561
    455666 8x94:A (2.55) BS01 EZI N/A N/A Q8NER1 39107321
    455667 8x94:B (2.55) BS01 EZI N/A N/A Q8NER1 39107321
    455668 8x94:C (2.55) BS01 EZI N/A N/A Q8NER1 39107321
    455669 8x94:C (2.55) BS02 CLR N/A N/A Q8NER1 39107321
    455670 8x94:D (2.55) BS01 EZI N/A N/A Q8NER1 39107321
    455671 8x9d:A (2.11) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    455672 8x9d:A (2.11) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    455673 8x9d:A (2.11) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    455674 8x9e:A (2.5) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    455675 8x9e:A (2.5) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    455676 8x9e:A (2.5) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    455677 8x9f:A (2.48) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    455678 8x9f:A (2.48) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    455679 8x9f:A (2.48) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    455680 8x9f:A (2.48) BS04 S8I 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    455681 8x9g:A (3.11) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    455682 8x9g:A (3.11) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    455683 8x9g:A (3.11) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    455684 8x9g:A (3.11) BS04 S7L 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    455685 8x9h:A (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    455686 8x9h:A (2.2) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    455687 8x9h:A (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    455688 8xak:A (3.5) BS02 ADP N/A N/A N/A 39030241
    455689 8xak:A (3.5) BS03 ALF N/A N/A N/A 39030241
    455690 8xak:C (3.5) BS02 ADP N/A N/A N/A 39030241
    455691 8xak:C (3.5) BS03 ALF N/A N/A N/A 39030241
    455692 8xam:A (1.3) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    455693 8xam:A (1.3) BS02 XRH 2.5.1.6 GO:0004478 ... P31153 38342078
    455694 8xam:A (1.3) BS03 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    455695 8xam:B (1.3) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    455696 8xam:B (1.3) BS02 XRH 2.5.1.6 GO:0004478 ... P31153 38342078
    455697 8xam:B (1.3) BS03 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    455698 8xar:A (1.19) BS01 YMW N/A GO:0004478 ... P31153 38818879
    455699 8xar:A (1.19) BS02 SAM N/A GO:0004478 ... P31153 38818879
    455700 8xaw:A (2.73) BS01 ADP N/A N/A N/A 38834762
    455701 8xaw:B (2.73) BS03 ANP N/A N/A N/A 38834762
    455702 8xaw:C (2.73) BS03 ANP N/A N/A N/A 38834762
    455703 8xaw:C (2.73) BS04 ANP N/A N/A N/A 38834762
    455704 8xaw:D (2.73) BS03 ANP N/A N/A N/A 38834762
    455705 8xaw:E (2.73) BS02 ADP N/A N/A N/A 38834762
    455706 8xaw:F (2.73) BS01 ADP N/A N/A N/A 38834762
    455707 8xax:A (2.92) BS03 ANP N/A N/A N/A 38834762
    455708 8xax:B (2.92) BS03 ANP N/A N/A N/A 38834762
    455709 8xax:C (2.92) BS03 ANP N/A N/A N/A 38834762
    455710 8xax:C (2.92) BS04 ANP N/A N/A N/A 38834762
    455711 8xax:E (2.92) BS01 ADP N/A N/A N/A 38834762
    455712 8xax:F (2.92) BS01 ADP N/A N/A N/A 38834762
    455713 8xay:A (2.81) BS01 AGS N/A N/A N/A 38834762
    455714 8xay:B (2.81) BS03 AGS N/A N/A N/A 38834762
    455715 8xay:C (2.81) BS03 AGS N/A N/A N/A 38834762
    455716 8xay:C (2.81) BS04 AGS N/A N/A N/A 38834762
    455717 8xay:D (2.81) BS03 AGS N/A N/A N/A 38834762
    455718 8xay:E (2.81) BS02 ADP N/A N/A N/A 38834762
    455719 8xay:F (2.81) BS01 ADP N/A N/A N/A 38834762
    455720 8xb0:A (1.12) BS01 YN8 N/A GO:0004478 ... P31153 38818879
    455721 8xb0:A (1.12) BS02 SAM N/A GO:0004478 ... P31153 38818879
    455722 8xb2:A (3.04) BS01 YNT N/A GO:0005515 ... P0AEX9
    P23975    		 39143211
    455723 8xb3:A (2.8) BS01 YMN N/A GO:0005515 ... P0AEX9
    P23975    		 39143211
    455724 8xbe:A (3.4) BS01 KW0 ? GO:0004930 ... Q9UPC5 38326347
    455725 8xbg:A (3.43) BS01 KW0 ? GO:0004930 ... Q9UPC5 38326347
    455726 8xbh:R (2.83) BS01 KW3 ? GO:0004930 ... Q9UPC5 38326347
    455727 8xbi:R (3.06) BS01 KW3 ? GO:0004930 ... Q9UPC5 38326347
    455728 8xbs:A (2.21) BS02 CLR ? GO:0003723 ... Q9GZC8 38742627
    455729 8xbs:A (2.21) BS03 CLR ? GO:0003723 ... Q9GZC8 38742627
    455730 8xbs:A (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    455731 8xbs:B (2.21) BS02 CLR ? GO:0003723 ... Q9GZC8 38742627
    455732 8xbs:B (2.21) BS03 CLR ? GO:0003723 ... Q9GZC8 38742627
    455733 8xbs:B (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    455734 8xc1:A (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    455735 8xc1:A (2.21) BS05 CLR ? GO:0003723 ... Q9GZC8 38742627
    455736 8xc1:A (2.21) BS06 CLR ? GO:0003723 ... Q9GZC8 38742627
    455737 8xc1:B (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    455738 8xc1:B (2.21) BS05 CLR ? GO:0003723 ... Q9GZC8 38742627
    455739 8xc1:B (2.21) BS06 CLR ? GO:0003723 ... Q9GZC8 38742627
    455740 8xc4:B (3.24) BS01 FUC ? GO:0019031 ... Q4VCP5 38773072
    455741 8xcg:L (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    455742 8xcg:N (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    455743 8xcg:f (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    455744 8xcm:A (3.08) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    455745 8xcm:A (3.08) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    455746 8xcm:C (3.08) BS01 HEC ? N/A M1V1V5 N/A
    455747 8xcm:C (3.08) BS02 HEC ? N/A M1V1V5 N/A
    455748 8xcm:C (3.08) BS03 HEC ? N/A M1V1V5 N/A
    455749 8xcm:C (3.08) BS04 U10 ? N/A M1V1V5 N/A
    455750 8xcn:A (3.02) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    455751 8xcn:A (3.02) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    455752 8xcn:C (3.02) BS01 HEC ? N/A M1V1V5 N/A
    455753 8xcn:C (3.02) BS02 HEC ? N/A M1V1V5 N/A
    455754 8xcn:C (3.02) BS03 HEC ? N/A M1V1V5 N/A
    455755 8xcn:C (3.02) BS04 U10 ? N/A M1V1V5 N/A
    455756 8xco:A (2.64) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    455757 8xcp:A (2.64) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    455758 8xcp:A (2.64) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    455759 8xcq:A (2.6) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    455760 8xcq:A (2.6) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    455761 8xcr:A (2.6) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    455762 8xcr:A (2.6) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    455763 8xcs:A (2.63) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    455764 8xcs:A (2.63) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    455765 8xct:A (2.87) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    455766 8xcu:A (2.83) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    455767 8xcu:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    455768 8xcv:A (2.83) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    455769 8xcw:A (2.87) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    455770 8xcw:A (2.87) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    455771 8xcx:A (2.83) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    455772 8xcx:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    455773 8xcy:A (2.91) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    455774 8xcy:A (2.91) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    455775 8xcz:A (2.83) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    455776 8xcz:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    455777 8xd0:A (2.83) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    455778 8xd0:A (2.83) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    455779 8xd1:A (2.96) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    455780 8xd2:A (2.64) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    455781 8xd3:A (2.87) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    455782 8xd3:A (2.87) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    455783 8xd4:A (2.87) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    455784 8xd5:A (2.75) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    455785 8xd5:A (2.75) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    455786 8xd6:A (2.79) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    455787 8xd6:A (2.79) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    455788 8xd6:A (2.79) BS03 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    455789 8xdo:A (1.37) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    455790 8xdo:B (1.37) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    455791 8xdp:A (1.75) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    455792 8xdp:B (1.75) BS01 H6N N/A N/A A0A6B9TNK2 N/A
    455793 8xdp:B (1.75) BS03 SAH N/A N/A A0A6B9TNK2 N/A
    455794 8xdq:A (1.77) BS02 SAH N/A N/A N/A N/A
    455795 8xdq:B (1.77) BS02 SAH N/A N/A N/A N/A
    455796 8xdr:A (1.83) BS02 SAH N/A N/A N/A N/A
    455797 8xdr:B (1.83) BS02 SAH N/A N/A N/A N/A
    455798 8xdr:B (1.83) BS03 H6N N/A N/A N/A N/A
    455799 8xds:A (1.97) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    455800 8xds:B (1.97) BS02 SAH N/A N/A A0A6B9TNK2 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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