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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    455401 8x36:A (2.28) BS02 IPE 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    455402 8x36:B (2.28) BS01 IPE 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    455403 8x36:B (2.28) BS02 IPE 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    455404 8x36:B (2.28) BS03 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    455405 8x37:A (1.98) BS01 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    455406 8x37:A (1.98) BS02 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    455407 8x37:B (1.98) BS01 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    455408 8x37:B (1.98) BS02 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    455409 8x37:B (1.98) BS03 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    455410 8x38:A (2.0) BS01 FAD N/A GO:0071949 ... N/A N/A
    455411 8x3e:A (2.5) BS01 A1L3H N/A N/A Q6WG30 N/A
    455412 8x3e:A (2.5) BS02 HEM N/A N/A Q6WG30 N/A
    455413 8x3h:A (0.93) BS02 CO3 ? GO:0005576 ... P02789 N/A
    455414 8x3v:A (2.9) BS01 ATP N/A N/A P03304 N/A
    455415 8x3v:B (2.9) BS01 ATP N/A N/A P03304 N/A
    455416 8x3w:A (2.01) BS03 SO3 N/A N/A O59487 39146930
    455417 8x3w:A (2.01) BS04 SO3 N/A N/A O59487 39146930
    455418 8x3w:A (2.01) BS05 SO3 N/A N/A O59487 39146930
    455419 8x3w:A (2.01) BS06 ARG N/A N/A O59487 39146930
    455420 8x3w:B (2.01) BS01 SO3 N/A N/A O59487 39146930
    455421 8x3w:B (2.01) BS03 SO3 N/A N/A O59487 39146930
    455422 8x3w:B (2.01) BS04 ARG N/A N/A O59487 39146930
    455423 8x41:A (2.35) BS01 MTA N/A N/A O59487 39146930
    455424 8x41:A (2.35) BS02 ADN N/A N/A O59487 39146930
    455425 8x41:A (2.35) BS04 SO3 N/A N/A O59487 39146930
    455426 8x41:A (2.35) BS05 SO3 N/A N/A O59487 39146930
    455427 8x41:B (2.35) BS01 MTA N/A N/A O59487 39146930
    455428 8x41:B (2.35) BS02 ADN N/A N/A O59487 39146930
    455429 8x41:B (2.35) BS04 SO3 N/A N/A O59487 39146930
    455430 8x41:B (2.35) BS05 SO3 N/A N/A O59487 39146930
    455431 8x43:A (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    455432 8x43:A (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    455433 8x43:C (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    455434 8x43:C (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    455435 8x43:E (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    455436 8x43:E (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    455437 8x43:G (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    455438 8x43:G (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    455439 8x44:A (2.6) BS01 MTA N/A N/A O59487 39146930
    455440 8x44:B (2.6) BS01 MTA N/A N/A O59487 39146930
    455441 8x44:B (2.6) BS03 SO3 N/A N/A O59487 39146930
    455442 8x45:A (2.5) BS01 MTA N/A N/A O59487 39146930
    455443 8x45:A (2.5) BS02 SO3 N/A N/A O59487 39146930
    455444 8x45:B (2.5) BS01 MTA N/A N/A O59487 39146930
    455445 8x45:B (2.5) BS02 SO3 N/A N/A O59487 39146930
    455446 8x46:A (2.2) BS01 SFG N/A N/A O59487 39146930
    455447 8x46:A (2.2) BS03 ARG N/A N/A O59487 39146930
    455448 8x46:B (2.2) BS01 SFG N/A N/A O59487 39146930
    455449 8x46:B (2.2) BS02 SO3 N/A N/A O59487 39146930
    455450 8x46:B (2.2) BS03 ARG N/A N/A O59487 39146930
    455451 8x47:A (2.8) BS01 SAH N/A N/A O59487 39146930
    455452 8x47:A (2.8) BS02 SO3 N/A N/A O59487 39146930
    455453 8x47:A (2.8) BS03 ARG N/A N/A O59487 39146930
    455454 8x4i:A (3.3) BS01 MTA N/A N/A O59487 39146930
    455455 8x4l:A (2.6) BS02 SO3 N/A N/A O59487 39146930
    455456 8x4l:A (2.6) BS03 SO3 N/A N/A O59487 39146930
    455457 8x4l:A (2.6) BS04 ARG N/A N/A O59487 39146930
    455458 8x4l:B (2.6) BS01 SO3 N/A N/A O59487 39146930
    455459 8x4l:B (2.6) BS03 SO3 N/A N/A O59487 39146930
    455460 8x4l:B (2.6) BS04 ARG N/A N/A O59487 39146930
    455461 8x4o:A (3.0) BS01 MTA N/A N/A O59487 39146930
    455462 8x4o:B (3.0) BS01 MTA N/A N/A O59487 39146930
    455463 8x4p:A (2.6) BS01 SFG N/A N/A O59487 39146930
    455464 8x4p:B (2.6) BS01 SFG N/A N/A O59487 39146930
    455465 8x52:C (2.9) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    455466 8x53:C (3.0) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    455467 8x53:C (3.0) BS02 CLR ? GO:0000139 ... Q96BI3 38843321
    455468 8x54:C (2.9) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    455469 8x54:C (2.9) BS02 CLR ? GO:0000139 ... Q96BI3 38843321
    455470 8x54:C (2.9) BS03 CLR ? GO:0000139 ... Q96BI3 38843321
    455471 8x5b:A (2.84) BS01 PO4 N/A N/A Q9UBH6 39169184
    455472 8x5b:A (2.84) BS02 PO4 N/A N/A Q9UBH6 39169184
    455473 8x5b:A (2.84) BS03 PO4 N/A N/A Q9UBH6 39169184
    455474 8x5b:A (2.84) BS04 PO4 N/A N/A Q9UBH6 39169184
    455475 8x5b:F (2.84) BS01 PO4 N/A N/A Q9UBH6 39169184
    455476 8x5b:F (2.84) BS02 PO4 N/A N/A Q9UBH6 39169184
    455477 8x5b:F (2.84) BS03 PO4 N/A N/A Q9UBH6 39169184
    455478 8x5b:F (2.84) BS04 PO4 N/A N/A Q9UBH6 39169184
    455479 8x5f:A (2.96) BS01 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    455480 8x5f:A (2.96) BS02 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    455481 8x5f:A (2.96) BS03 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    455482 8x5f:A (2.96) BS04 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    455483 8x5f:A (2.96) BS05 IHP N/A GO:0000822 ... Q9UBH6 39169184
    455484 8x5f:B (2.96) BS01 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    455485 8x5f:B (2.96) BS02 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    455486 8x5f:B (2.96) BS03 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    455487 8x5f:B (2.96) BS04 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    455488 8x5f:B (2.96) BS05 IHP N/A GO:0000822 ... Q9UBH6 39169184
    455489 8x5i:A (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455490 8x5i:A (3.01) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455491 8x5i:B (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455492 8x5i:B (3.01) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455493 8x5i:C (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455494 8x5i:D (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455495 8x5i:D (3.01) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455496 8x5k:A (1.8) BS01 3YT 2.7.10.2 GO:0004672 ... P43405 N/A
    455497 8x5l:A (2.75) BS01 RKD 2.7.11.11 GO:0000287 ... P17612 N/A
    455498 8x5l:B (2.75) BS01 RKD 2.7.11.11 GO:0000287 ... P17612 N/A
    455499 8x5m:A (2.0) BS01 Y4O 2.7.11.24 GO:0004672 ... P45983 N/A
    455500 8x5n:A (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455501 8x5n:A (2.8) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455502 8x5n:B (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455503 8x5n:C (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455504 8x5n:D (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455505 8x5n:D (2.8) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    455506 8x5y:B (3.0) BS01 XB7 ? GO:0004930 ... P0ABE7
    P35367    		 38167898
    455507 8x61:A (3.05) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    455508 8x61:A (3.05) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    455509 8x61:B (3.05) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    455510 8x61:B (3.05) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    455511 8x63:B (3.2) BS01 Y5E ? GO:0004930 ... P0ABE7
    P35367    		 38167898
    455512 8x64:B (3.4) BS01 Y5R ? GO:0004930 ... P0ABE7
    P35367    		 38167898
    455513 8x6m:A (2.0) BS02 NAD 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    455514 8x6m:A (2.0) BS03 GOL 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    455515 8x6m:A (2.0) BS04 GOL 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    455516 8x6m:B (2.0) BS02 NAD 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    455517 8x6r:A (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    455518 8x6r:A (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    455519 8x6r:B (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    455520 8x6r:B (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    455521 8x6r:C (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    455522 8x6r:C (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    455523 8x6r:D (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    455524 8x6r:D (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    455525 8x6r:E (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    455526 8x6r:E (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    455527 8x6r:F (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    455528 8x6r:F (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    455529 8x71:B (1.58) BS01 YCC N/A N/A Q06830 N/A
    455530 8x72:A (2.2) BS01 ANP 2.7.11.21 GO:0004672 ... P53350 N/A
    455531 8x73:B (1.61) BS01 YC0 N/A N/A Q06830 N/A
    455532 8x77:B (3.52) BS01 SAH 2.1.1.85 GO:0000785 ... Q86TU7 38755176
    455533 8x79:R (2.41) BS01 Y9Q ? GO:0004930 ... P43119 38335293
    455534 8x7a:R (2.56) BS01 Y9J ? GO:0004930 ... P43119 38335293
    455535 8x7l:F (3.4) BS01 IZ8 N/A N/A P37840 39172784
    455536 8x7l:H (3.4) BS01 IZ8 N/A N/A P37840 39172784
    455537 8x7l:I (3.4) BS01 IZ8 N/A N/A P37840 39172784
    455538 8x7m:A (3.0) BS01 YA9 N/A N/A P37840 39172784
    455539 8x7m:B (3.0) BS01 YA9 N/A N/A P37840 39172784
    455540 8x7m:C (3.0) BS01 YA9 N/A N/A P37840 39172784
    455541 8x7m:C (3.0) BS02 YA9 N/A N/A P37840 39172784
    455542 8x7m:D (3.0) BS01 YA9 N/A N/A P37840 39172784
    455543 8x7m:E (3.0) BS01 YA9 N/A N/A P37840 39172784
    455544 8x7m:E (3.0) BS02 YA9 N/A N/A P37840 39172784
    455545 8x7m:F (3.0) BS01 YA9 N/A N/A P37840 39172784
    455546 8x7m:F (3.0) BS02 YA9 N/A N/A P37840 39172784
    455547 8x7m:F (3.0) BS03 YA9 N/A N/A P37840 39172784
    455548 8x7m:G (3.0) BS01 YA9 N/A N/A P37840 39172784
    455549 8x7m:G (3.0) BS02 YA9 N/A N/A P37840 39172784
    455550 8x7m:G (3.0) BS03 YA9 N/A N/A P37840 39172784
    455551 8x7m:H (3.0) BS01 YA9 N/A N/A P37840 39172784
    455552 8x7m:H (3.0) BS02 YA9 N/A N/A P37840 39172784
    455553 8x7m:I (3.0) BS01 YA9 N/A N/A P37840 39172784
    455554 8x7m:I (3.0) BS02 YA9 N/A N/A P37840 39172784
    455555 8x7m:I (3.0) BS03 YA9 N/A N/A P37840 39172784
    455556 8x7m:J (3.0) BS01 YA9 N/A N/A P37840 39172784
    455557 8x7m:J (3.0) BS02 YA9 N/A N/A P37840 39172784
    455558 8x7m:J (3.0) BS03 YA9 N/A N/A P37840 39172784
    455559 8x7m:J (3.0) BS04 YA9 N/A N/A P37840 39172784
    455560 8x7o:A (3.5) BS01 IZV N/A N/A P37840 39172784
    455561 8x7o:A (3.5) BS02 IZV N/A N/A P37840 39172784
    455562 8x7o:C (3.5) BS01 IZV N/A N/A P37840 39172784
    455563 8x7o:C (3.5) BS02 IZV N/A N/A P37840 39172784
    455564 8x7o:D (3.5) BS01 IZV N/A N/A P37840 39172784
    455565 8x7o:D (3.5) BS02 IZV N/A N/A P37840 39172784
    455566 8x7o:E (3.5) BS01 IZV N/A N/A P37840 39172784
    455567 8x7o:E (3.5) BS02 IZV N/A N/A P37840 39172784
    455568 8x7o:G (3.5) BS01 IZV N/A N/A P37840 39172784
    455569 8x7o:G (3.5) BS02 IZV N/A N/A P37840 39172784
    455570 8x7p:A (2.7) BS01 V79 N/A N/A P37840 39172784
    455571 8x7p:B (2.7) BS01 V79 N/A N/A P37840 39172784
    455572 8x7p:C (2.7) BS01 V79 N/A N/A P37840 39172784
    455573 8x7p:D (2.7) BS01 V79 N/A N/A P37840 39172784
    455574 8x7p:E (2.7) BS01 V79 N/A N/A P37840 39172784
    455575 8x7q:A (2.7) BS01 3LS N/A N/A P37840 39172784
    455576 8x7q:B (2.7) BS01 3LS N/A N/A P37840 39172784
    455577 8x7q:C (2.7) BS01 3LS N/A N/A P37840 39172784
    455578 8x7q:E (2.7) BS01 3LS N/A N/A P37840 39172784
    455579 8x7q:F (2.7) BS01 3LS N/A N/A P37840 39172784
    455580 8x7q:G (2.7) BS01 3LS N/A N/A P37840 39172784
    455581 8x7q:H (2.7) BS01 3LS N/A N/A P37840 39172784
    455582 8x7q:I (2.7) BS01 3LS N/A N/A P37840 39172784
    455583 8x7q:J (2.7) BS01 3LS N/A N/A P37840 39172784
    455584 8x7r:A (3.0) BS01 Y9W N/A N/A P37840 39172784
    455585 8x7r:A (3.0) BS02 Y9W N/A N/A P37840 39172784
    455586 8x7r:B (3.0) BS01 Y9W N/A N/A P37840 39172784
    455587 8x7r:B (3.0) BS02 Y9W N/A N/A P37840 39172784
    455588 8x7r:C (3.0) BS01 Y9W N/A N/A P37840 39172784
    455589 8x7r:C (3.0) BS02 Y9W N/A N/A P37840 39172784
    455590 8x7r:D (3.0) BS01 Y9W N/A N/A P37840 39172784
    455591 8x7r:D (3.0) BS02 Y9W N/A N/A P37840 39172784
    455592 8x7r:D (3.0) BS03 Y9W N/A N/A P37840 39172784
    455593 8x7r:E (3.0) BS01 Y9W N/A N/A P37840 39172784
    455594 8x7r:E (3.0) BS02 Y9W N/A N/A P37840 39172784
    455595 8x7r:F (3.0) BS01 Y9W N/A N/A P37840 39172784
    455596 8x7r:F (3.0) BS02 Y9W N/A N/A P37840 39172784
    455597 8x7r:G (3.0) BS01 Y9W N/A N/A P37840 39172784
    455598 8x7r:G (3.0) BS02 Y9W N/A N/A P37840 39172784
    455599 8x7r:G (3.0) BS03 Y9W N/A N/A P37840 39172784
    455600 8x7r:H (3.0) BS01 Y9W N/A N/A P37840 39172784
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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