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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    453601 8wmj:F (3.0) BS08 WVN ? N/A A6MVU7 38734819
    453602 8wmj:F (3.0) BS09 CLA ? N/A A6MVU7 38734819
    453603 8wmj:I (3.0) BS01 CLA ? GO:0009507 ... A6MVV1 38734819
    453604 8wmj:I (3.0) BS02 CLA ? GO:0009507 ... A6MVV1 38734819
    453605 8wmj:I (3.0) BS03 CLA ? GO:0009507 ... A6MVV1 38734819
    453606 8wmj:I (3.0) BS04 WVN ? GO:0009507 ... A6MVV1 38734819
    453607 8wmj:I (3.0) BS05 WVN ? GO:0009507 ... A6MVV1 38734819
    453608 8wmj:I (3.0) BS06 CLA ? GO:0009507 ... A6MVV1 38734819
    453609 8wmj:J (3.0) BS01 CLA ? GO:0009507 ... A6MVU6 38734819
    453610 8wmj:J (3.0) BS02 CLA ? GO:0009507 ... A6MVU6 38734819
    453611 8wmj:J (3.0) BS03 CLA ? GO:0009507 ... A6MVU6 38734819
    453612 8wmj:J (3.0) BS04 CLA ? GO:0009507 ... A6MVU6 38734819
    453613 8wmj:J (3.0) BS05 CLA ? GO:0009507 ... A6MVU6 38734819
    453614 8wmj:J (3.0) BS06 WVN ? GO:0009507 ... A6MVU6 38734819
    453615 8wmj:J (3.0) BS07 WVN ? GO:0009507 ... A6MVU6 38734819
    453616 8wmj:J (3.0) BS08 CLA ? GO:0009507 ... A6MVU6 38734819
    453617 8wmj:J (3.0) BS09 II0 ? GO:0009507 ... A6MVU6 38734819
    453618 8wmj:J (3.0) BS10 CLA ? GO:0009507 ... A6MVU6 38734819
    453619 8wmj:J (3.0) BS11 CLA ? GO:0009507 ... A6MVU6 38734819
    453620 8wmj:K (3.0) BS01 CLA ? GO:0009507 ... A6MVS9 38734819
    453621 8wmj:K (3.0) BS02 CLA ? GO:0009507 ... A6MVS9 38734819
    453622 8wmj:K (3.0) BS03 CLA ? GO:0009507 ... A6MVS9 38734819
    453623 8wmj:K (3.0) BS04 WVN ? GO:0009507 ... A6MVS9 38734819
    453624 8wmj:K (3.0) BS05 CLA ? GO:0009507 ... A6MVS9 38734819
    453625 8wmj:K (3.0) BS06 CLA ? GO:0009507 ... A6MVS9 38734819
    453626 8wmj:K (3.0) BS07 WVN ? GO:0009507 ... A6MVS9 38734819
    453627 8wmj:L (3.0) BS01 CLA ? GO:0009507 ... A6MVV8 38734819
    453628 8wmj:L (3.0) BS02 CLA ? GO:0009507 ... A6MVV8 38734819
    453629 8wmj:L (3.0) BS03 CLA ? GO:0009507 ... A6MVV8 38734819
    453630 8wmj:L (3.0) BS04 CLA ? GO:0009507 ... A6MVV8 38734819
    453631 8wmj:L (3.0) BS05 CLA ? GO:0009507 ... A6MVV8 38734819
    453632 8wmj:L (3.0) BS06 WVN ? GO:0009507 ... A6MVV8 38734819
    453633 8wmj:L (3.0) BS07 CLA ? GO:0009507 ... A6MVV8 38734819
    453634 8wmj:L (3.0) BS08 CLA ? GO:0009507 ... A6MVV8 38734819
    453635 8wmj:L (3.0) BS09 CLA ? GO:0009507 ... A6MVV8 38734819
    453636 8wmj:L (3.0) BS10 WVN ? GO:0009507 ... A6MVV8 38734819
    453637 8wmj:L (3.0) BS11 CLA ? GO:0009507 ... A6MVV8 38734819
    453638 8wmj:M (3.0) BS01 CLA ? GO:0009507 ... A6MVT4 38734819
    453639 8wmj:M (3.0) BS02 WVN ? GO:0009507 ... A6MVT4 38734819
    453640 8wmj:Q (3.0) BS01 CLA N/A N/A N/A 38734819
    453641 8wmj:Q (3.0) BS02 CLA N/A N/A N/A 38734819
    453642 8wmj:Q (3.0) BS03 CLA N/A N/A N/A 38734819
    453643 8wmj:Q (3.0) BS04 CLA N/A N/A N/A 38734819
    453644 8wmj:R (3.0) BS01 CLA N/A N/A N/A 38734819
    453645 8wmj:R (3.0) BS02 CLA N/A N/A N/A 38734819
    453646 8wmj:R (3.0) BS03 CLA N/A N/A N/A 38734819
    453647 8wmj:R (3.0) BS04 WVN N/A N/A N/A 38734819
    453648 8wmj:R (3.0) BS05 CLA N/A N/A N/A 38734819
    453649 8wmj:R (3.0) BS06 IHT N/A N/A N/A 38734819
    453650 8wmj:a (3.0) BS01 CLA N/A N/A N/A 38734819
    453651 8wmj:a (3.0) BS02 CLA N/A N/A N/A 38734819
    453652 8wmj:a (3.0) BS03 CLA N/A N/A N/A 38734819
    453653 8wmj:a (3.0) BS04 CLA N/A N/A N/A 38734819
    453654 8wmj:a (3.0) BS05 CLA N/A N/A N/A 38734819
    453655 8wmj:a (3.0) BS06 CLA N/A N/A N/A 38734819
    453656 8wmj:a (3.0) BS07 CLA N/A N/A N/A 38734819
    453657 8wmj:a (3.0) BS08 CLA N/A N/A N/A 38734819
    453658 8wmj:a (3.0) BS09 CLA N/A N/A N/A 38734819
    453659 8wmj:a (3.0) BS10 CLA N/A N/A N/A 38734819
    453660 8wmj:a (3.0) BS11 CLA N/A N/A N/A 38734819
    453661 8wmj:a (3.0) BS12 CLA N/A N/A N/A 38734819
    453662 8wmj:a (3.0) BS13 II0 N/A N/A N/A 38734819
    453663 8wmj:a (3.0) BS14 II0 N/A N/A N/A 38734819
    453664 8wmj:a (3.0) BS15 II0 N/A N/A N/A 38734819
    453665 8wmj:a (3.0) BS16 IHT N/A N/A N/A 38734819
    453666 8wmj:a (3.0) BS17 II0 N/A N/A N/A 38734819
    453667 8wmj:a (3.0) BS18 CLA N/A N/A N/A 38734819
    453668 8wmj:b (3.0) BS01 CLA N/A N/A N/A 38734819
    453669 8wmj:b (3.0) BS02 CLA N/A N/A N/A 38734819
    453670 8wmj:b (3.0) BS03 KC2 N/A N/A N/A 38734819
    453671 8wmj:b (3.0) BS04 CLA N/A N/A N/A 38734819
    453672 8wmj:b (3.0) BS05 CLA N/A N/A N/A 38734819
    453673 8wmj:b (3.0) BS06 CLA N/A N/A N/A 38734819
    453674 8wmj:b (3.0) BS07 CLA N/A N/A N/A 38734819
    453675 8wmj:b (3.0) BS08 CLA N/A N/A N/A 38734819
    453676 8wmj:b (3.0) BS09 CLA N/A N/A N/A 38734819
    453677 8wmj:b (3.0) BS10 CLA N/A N/A N/A 38734819
    453678 8wmj:b (3.0) BS11 CLA N/A N/A N/A 38734819
    453679 8wmj:b (3.0) BS12 CLA N/A N/A N/A 38734819
    453680 8wmj:b (3.0) BS13 CLA N/A N/A N/A 38734819
    453681 8wmj:b (3.0) BS14 CLA N/A N/A N/A 38734819
    453682 8wmj:b (3.0) BS15 CLA N/A N/A N/A 38734819
    453683 8wmj:b (3.0) BS16 CLA N/A N/A N/A 38734819
    453684 8wmj:b (3.0) BS17 II0 N/A N/A N/A 38734819
    453685 8wmj:b (3.0) BS18 II0 N/A N/A N/A 38734819
    453686 8wmj:b (3.0) BS19 IHT N/A N/A N/A 38734819
    453687 8wmj:b (3.0) BS20 IHT N/A N/A N/A 38734819
    453688 8wmj:b (3.0) BS21 II0 N/A N/A N/A 38734819
    453689 8wmj:c (3.0) BS01 CLA N/A N/A N/A 38734819
    453690 8wmj:c (3.0) BS02 CLA N/A N/A N/A 38734819
    453691 8wmj:c (3.0) BS03 CLA N/A N/A N/A 38734819
    453692 8wmj:c (3.0) BS04 CLA N/A N/A N/A 38734819
    453693 8wmj:c (3.0) BS05 CLA N/A N/A N/A 38734819
    453694 8wmj:c (3.0) BS06 CLA N/A N/A N/A 38734819
    453695 8wmj:c (3.0) BS07 CLA N/A N/A N/A 38734819
    453696 8wmj:c (3.0) BS08 CLA N/A N/A N/A 38734819
    453697 8wmj:c (3.0) BS09 CLA N/A N/A N/A 38734819
    453698 8wmj:c (3.0) BS10 KC2 N/A N/A N/A 38734819
    453699 8wmj:c (3.0) BS11 CLA N/A N/A N/A 38734819
    453700 8wmj:c (3.0) BS12 CLA N/A N/A N/A 38734819
    453701 8wmj:c (3.0) BS13 II0 N/A N/A N/A 38734819
    453702 8wmj:c (3.0) BS14 II0 N/A N/A N/A 38734819
    453703 8wmj:c (3.0) BS15 II0 N/A N/A N/A 38734819
    453704 8wmj:c (3.0) BS16 IHT N/A N/A N/A 38734819
    453705 8wmj:c (3.0) BS17 II0 N/A N/A N/A 38734819
    453706 8wmj:c (3.0) BS18 CLA N/A N/A N/A 38734819
    453707 8wmj:c (3.0) BS19 IHT N/A N/A N/A 38734819
    453708 8wmj:c (3.0) BS20 IHT N/A N/A N/A 38734819
    453709 8wmj:d (3.0) BS01 CLA N/A N/A N/A 38734819
    453710 8wmj:d (3.0) BS02 II0 N/A N/A N/A 38734819
    453711 8wmj:d (3.0) BS03 CLA N/A N/A N/A 38734819
    453712 8wmj:d (3.0) BS04 CLA N/A N/A N/A 38734819
    453713 8wmj:d (3.0) BS05 CLA N/A N/A N/A 38734819
    453714 8wmj:d (3.0) BS06 CLA N/A N/A N/A 38734819
    453715 8wmj:d (3.0) BS07 CLA N/A N/A N/A 38734819
    453716 8wmj:d (3.0) BS08 CLA N/A N/A N/A 38734819
    453717 8wmj:d (3.0) BS09 CLA N/A N/A N/A 38734819
    453718 8wmj:d (3.0) BS10 CLA N/A N/A N/A 38734819
    453719 8wmj:d (3.0) BS11 CLA N/A N/A N/A 38734819
    453720 8wmj:d (3.0) BS12 KC2 N/A N/A N/A 38734819
    453721 8wmj:d (3.0) BS13 KC2 N/A N/A N/A 38734819
    453722 8wmj:d (3.0) BS14 CLA N/A N/A N/A 38734819
    453723 8wmj:d (3.0) BS15 II0 N/A N/A N/A 38734819
    453724 8wmj:d (3.0) BS16 II0 N/A N/A N/A 38734819
    453725 8wmj:d (3.0) BS17 II0 N/A N/A N/A 38734819
    453726 8wmj:d (3.0) BS18 II0 N/A N/A N/A 38734819
    453727 8wmj:h (3.0) BS01 CLA N/A N/A N/A 38734819
    453728 8wmj:h (3.0) BS02 CLA N/A N/A N/A 38734819
    453729 8wmj:h (3.0) BS03 CLA N/A N/A N/A 38734819
    453730 8wmj:h (3.0) BS04 CLA N/A N/A N/A 38734819
    453731 8wmj:h (3.0) BS05 CLA N/A N/A N/A 38734819
    453732 8wmj:h (3.0) BS06 CLA N/A N/A N/A 38734819
    453733 8wmj:h (3.0) BS07 CLA N/A N/A N/A 38734819
    453734 8wmj:h (3.0) BS08 CLA N/A N/A N/A 38734819
    453735 8wmj:h (3.0) BS09 II0 N/A N/A N/A 38734819
    453736 8wmj:h (3.0) BS10 II0 N/A N/A N/A 38734819
    453737 8wmj:h (3.0) BS11 II0 N/A N/A N/A 38734819
    453738 8wmj:h (3.0) BS12 CLA N/A N/A N/A 38734819
    453739 8wmj:h (3.0) BS13 CLA N/A N/A N/A 38734819
    453740 8wmj:i (3.0) BS01 CLA N/A N/A N/A 38734819
    453741 8wmj:i (3.0) BS02 CLA N/A N/A N/A 38734819
    453742 8wmj:i (3.0) BS03 CLA N/A N/A N/A 38734819
    453743 8wmj:i (3.0) BS04 CLA N/A N/A N/A 38734819
    453744 8wmj:i (3.0) BS05 CLA N/A N/A N/A 38734819
    453745 8wmj:i (3.0) BS06 CLA N/A N/A N/A 38734819
    453746 8wmj:i (3.0) BS07 CLA N/A N/A N/A 38734819
    453747 8wmj:i (3.0) BS08 CLA N/A N/A N/A 38734819
    453748 8wmj:i (3.0) BS09 KC2 N/A N/A N/A 38734819
    453749 8wmj:i (3.0) BS10 CLA N/A N/A N/A 38734819
    453750 8wmj:i (3.0) BS11 CLA N/A N/A N/A 38734819
    453751 8wmj:i (3.0) BS12 II0 N/A N/A N/A 38734819
    453752 8wmj:i (3.0) BS13 II0 N/A N/A N/A 38734819
    453753 8wmj:i (3.0) BS14 II0 N/A N/A N/A 38734819
    453754 8wmj:i (3.0) BS15 WVN N/A N/A N/A 38734819
    453755 8wmj:i (3.0) BS16 II0 N/A N/A N/A 38734819
    453756 8wmj:i (3.0) BS17 KC2 N/A N/A N/A 38734819
    453757 8wmj:i (3.0) BS18 II0 N/A N/A N/A 38734819
    453758 8wmj:i (3.0) BS19 CLA N/A N/A N/A 38734819
    453759 8wmj:i (3.0) BS20 CLA N/A N/A N/A 38734819
    453760 8wmj:i (3.0) BS21 CLA N/A N/A N/A 38734819
    453761 8wmj:i (3.0) BS22 CLA N/A N/A N/A 38734819
    453762 8wmj:j (3.0) BS01 CLA N/A N/A N/A 38734819
    453763 8wmj:j (3.0) BS02 II0 N/A N/A N/A 38734819
    453764 8wmj:j (3.0) BS03 WVN N/A N/A N/A 38734819
    453765 8wmj:j (3.0) BS04 II0 N/A N/A N/A 38734819
    453766 8wmj:j (3.0) BS05 CLA N/A N/A N/A 38734819
    453767 8wmj:j (3.0) BS06 CLA N/A N/A N/A 38734819
    453768 8wmj:j (3.0) BS07 CLA N/A N/A N/A 38734819
    453769 8wmj:j (3.0) BS08 CLA N/A N/A N/A 38734819
    453770 8wmj:j (3.0) BS09 CLA N/A N/A N/A 38734819
    453771 8wmj:j (3.0) BS10 CLA N/A N/A N/A 38734819
    453772 8wmj:j (3.0) BS11 CLA N/A N/A N/A 38734819
    453773 8wmj:j (3.0) BS12 CLA N/A N/A N/A 38734819
    453774 8wmj:j (3.0) BS13 CLA N/A N/A N/A 38734819
    453775 8wmj:j (3.0) BS14 KC2 N/A N/A N/A 38734819
    453776 8wmj:j (3.0) BS15 CLA N/A N/A N/A 38734819
    453777 8wmj:j (3.0) BS16 CLA N/A N/A N/A 38734819
    453778 8wmj:j (3.0) BS17 II0 N/A N/A N/A 38734819
    453779 8wmj:j (3.0) BS18 II0 N/A N/A N/A 38734819
    453780 8wmj:j (3.0) BS19 II0 N/A N/A N/A 38734819
    453781 8wmj:j (3.0) BS20 IHT N/A N/A N/A 38734819
    453782 8wmj:k (3.0) BS01 CLA N/A N/A N/A 38734819
    453783 8wmj:k (3.0) BS02 CLA N/A N/A N/A 38734819
    453784 8wmj:k (3.0) BS03 CLA N/A N/A N/A 38734819
    453785 8wmj:k (3.0) BS04 CLA N/A N/A N/A 38734819
    453786 8wmj:k (3.0) BS05 CLA N/A N/A N/A 38734819
    453787 8wmj:k (3.0) BS06 CLA N/A N/A N/A 38734819
    453788 8wmj:k (3.0) BS07 CLA N/A N/A N/A 38734819
    453789 8wmj:k (3.0) BS08 CLA N/A N/A N/A 38734819
    453790 8wmj:k (3.0) BS09 CLA N/A N/A N/A 38734819
    453791 8wmj:k (3.0) BS10 CLA N/A N/A N/A 38734819
    453792 8wmj:k (3.0) BS11 KC2 N/A N/A N/A 38734819
    453793 8wmj:k (3.0) BS12 KC2 N/A N/A N/A 38734819
    453794 8wmj:k (3.0) BS13 KC2 N/A N/A N/A 38734819
    453795 8wmj:k (3.0) BS14 CLA N/A N/A N/A 38734819
    453796 8wmj:k (3.0) BS15 II0 N/A N/A N/A 38734819
    453797 8wmj:k (3.0) BS16 II0 N/A N/A N/A 38734819
    453798 8wmj:k (3.0) BS17 II0 N/A N/A N/A 38734819
    453799 8wmj:k (3.0) BS18 IHT N/A N/A N/A 38734819
    453800 8wmj:k (3.0) BS19 II0 N/A N/A N/A 38734819
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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