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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    451801 8wb4:k (2.47) BS03 8CT ? GO:0005737 ... A0A222AIA0 38806516
    451802 8wb4:k (2.47) BS04 8CT ? GO:0005737 ... A0A222AIA0 38806516
    451803 8wb4:m (2.47) BS01 8CT ? N/A L1IFP3 38806516
    451804 8wb4:p (2.47) BS01 CLA N/A N/A N/A 38806516
    451805 8wb4:p (2.47) BS02 II0 N/A N/A N/A 38806516
    451806 8wb4:p (2.47) BS03 CLA N/A N/A N/A 38806516
    451807 8wb4:p (2.47) BS04 II0 N/A N/A N/A 38806516
    451808 8wb4:p (2.47) BS05 CLA N/A N/A N/A 38806516
    451809 8wb4:p (2.47) BS06 CLA N/A N/A N/A 38806516
    451810 8wb4:p (2.47) BS07 CLA N/A N/A N/A 38806516
    451811 8wb4:p (2.47) BS08 CLA N/A N/A N/A 38806516
    451812 8wb4:p (2.47) BS09 CLA N/A N/A N/A 38806516
    451813 8wb4:p (2.47) BS10 CLA N/A N/A N/A 38806516
    451814 8wb4:p (2.47) BS11 CLA N/A N/A N/A 38806516
    451815 8wb4:p (2.47) BS12 CLA N/A N/A N/A 38806516
    451816 8wb4:p (2.47) BS13 CLA N/A N/A N/A 38806516
    451817 8wb4:p (2.47) BS14 KC2 N/A N/A N/A 38806516
    451818 8wb4:p (2.47) BS15 CLA N/A N/A N/A 38806516
    451819 8wb4:p (2.47) BS16 CLA N/A N/A N/A 38806516
    451820 8wb4:p (2.47) BS17 II0 N/A N/A N/A 38806516
    451821 8wb4:p (2.47) BS18 II0 N/A N/A N/A 38806516
    451822 8wb4:p (2.47) BS19 II0 N/A N/A N/A 38806516
    451823 8wb4:p (2.47) BS20 IHT N/A N/A N/A 38806516
    451824 8wb4:p (2.47) BS21 CLA N/A N/A N/A 38806516
    451825 8wb4:s (2.47) BS02 CLA N/A N/A N/A 38806516
    451826 8wb4:s (2.47) BS03 CLA N/A N/A N/A 38806516
    451827 8wb4:s (2.47) BS04 CLA N/A N/A N/A 38806516
    451828 8wb4:s (2.47) BS05 CLA N/A N/A N/A 38806516
    451829 8wb4:s (2.47) BS06 CLA N/A N/A N/A 38806516
    451830 8wb4:s (2.47) BS07 CLA N/A N/A N/A 38806516
    451831 8wb4:v (2.47) BS01 HEM ? N/A A0A222AI35 38806516
    451832 8wb4:x (2.47) BS01 CLA ? GO:0009523 ... A0A222AI61 38806516
    451833 8wb4:y (2.47) BS01 8CT ? GO:0009523 ... A0A222AI69 38806516
    451834 8wb4:z (2.47) BS01 KC2 ? GO:0009523 ... A0A222AI96 38806516
    451835 8wb4:z (2.47) BS02 8CT ? GO:0009523 ... A0A222AI96 38806516
    451836 8wba:A (3.1) BS01 Y01 ? GO:0005524 ... Q84TH5 38050355
    451837 8wba:A (3.1) BS02 Y01 ? GO:0005524 ... Q84TH5 38050355
    451838 8wba:B (3.1) BS01 Y01 ? GO:0005524 ... Q84TH5 38050355
    451839 8wba:B (3.1) BS02 Y01 ? GO:0005524 ... Q84TH5 38050355
    451840 8wbd:B (2.9) BS01 TGL 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 N/A Q58HT7 38691607
    451841 8wbd:C (2.9) BS01 TGL 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 N/A Q58HT7 38691607
    451842 8wbd:b (2.9) BS01 TGL 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 N/A Q58HT7 38691607
    451843 8wbq:A (2.2) BS01 TLA ? GO:0016787 ... Q1KLR5 38199576
    451844 8wbq:B (2.2) BS01 TLA ? GO:0016787 ... Q1KLR5 38199576
    451845 8wbt:A (2.05) BS01 TLA 3.8.1.2 GO:0016787 ... W8PFD2 38199576
    451846 8wbt:B (2.05) BS01 TLA 3.8.1.2 GO:0016787 ... W8PFD2 38199576
    451847 8wbt:C (2.05) BS01 TLA 3.8.1.2 GO:0016787 ... W8PFD2 38199576
    451848 8wbt:D (2.05) BS01 TLA 3.8.1.2 GO:0016787 ... W8PFD2 38199576
    451849 8wbu:A (1.7) BS01 BMA 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    451850 8wbu:A (1.7) BS02 BMA 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    451851 8wbv:A (1.95) BS01 DNO 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    451852 8wbv:A (1.95) BS02 BMA 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    451853 8wbx:B (3.23) BS01 A8S ? GO:0005524 ... Q84TH5 38050355
    451854 8wby:A (3.18) BS01 WM8 N/A N/A Q695T7 39174516
    451855 8wby:D (3.18) BS01 WM8 N/A N/A Q695T7 39174516
    451856 8wbz:A (3.2) BS01 XF0 N/A N/A Q695T7 39174516
    451857 8wbz:D (3.2) BS01 XF0 N/A N/A Q695T7 39174516
    451858 8wc3:R (3.0) BS01 UJL ? GO:0001594 ... Q923Y8 37963465
    451859 8wc4:R (3.1) BS01 VMT ? GO:0001594 ... Q923Y8 37963465
    451860 8wc6:R (3.2) BS01 PEA ? GO:0001594 ... Q923Y8 37963465
    451861 8wc7:R (3.1) BS01 VMK ? GO:0001594 ... Q923Y8 37963465
    451862 8wc8:R (2.9) BS01 VMT ? GO:0001594 ... Q96RJ0 37963465
    451863 8wc9:R (3.2) BS01 VMT ? GO:0001594 ... Q923Y8 37963465
    451864 8wca:R (3.48) BS01 PEA ? GO:0001594 ... Q96RJ0 37963465
    451865 8wcf:A (1.3) BS01 NAD N/A N/A A0A4Y8A290 N/A
    451866 8wch:A (1.519) BS01 PCA N/A N/A Q4FMW4 39261732
    451867 8wch:B (1.519) BS01 PCA N/A N/A Q4FMW4 39261732
    451868 8wck:1 (2.71) BS01 A86 N/A N/A A0A679BXP6 39030906
    451869 8wck:1 (2.71) BS02 A86 N/A N/A A0A679BXP6 39030906
    451870 8wck:1 (2.71) BS03 A86 N/A N/A A0A679BXP6 39030906
    451871 8wck:1 (2.71) BS04 A86 N/A N/A A0A679BXP6 39030906
    451872 8wck:1 (2.71) BS05 A86 N/A N/A A0A679BXP6 39030906
    451873 8wck:1 (2.71) BS06 A86 N/A N/A A0A679BXP6 39030906
    451874 8wck:1 (2.71) BS07 CLA N/A N/A A0A679BXP6 39030906
    451875 8wck:1 (2.71) BS08 KC2 N/A N/A A0A679BXP6 39030906
    451876 8wck:1 (2.71) BS09 CLA N/A N/A A0A679BXP6 39030906
    451877 8wck:1 (2.71) BS10 KC2 N/A N/A A0A679BXP6 39030906
    451878 8wck:1 (2.71) BS11 KC1 N/A N/A A0A679BXP6 39030906
    451879 8wck:1 (2.71) BS12 CLA N/A N/A A0A679BXP6 39030906
    451880 8wck:1 (2.71) BS13 KC1 N/A N/A A0A679BXP6 39030906
    451881 8wck:1 (2.71) BS14 CLA N/A N/A A0A679BXP6 39030906
    451882 8wck:1 (2.71) BS15 CLA N/A N/A A0A679BXP6 39030906
    451883 8wck:1 (2.71) BS16 CLA N/A N/A A0A679BXP6 39030906
    451884 8wck:1 (2.71) BS17 CLA N/A N/A A0A679BXP6 39030906
    451885 8wck:2 (2.71) BS01 CLA N/A N/A A0A679BXP6 39030906
    451886 8wck:2 (2.71) BS02 A86 N/A N/A A0A679BXP6 39030906
    451887 8wck:2 (2.71) BS03 A86 N/A N/A A0A679BXP6 39030906
    451888 8wck:2 (2.71) BS04 A86 N/A N/A A0A679BXP6 39030906
    451889 8wck:2 (2.71) BS05 A86 N/A N/A A0A679BXP6 39030906
    451890 8wck:2 (2.71) BS06 A86 N/A N/A A0A679BXP6 39030906
    451891 8wck:2 (2.71) BS07 A86 N/A N/A A0A679BXP6 39030906
    451892 8wck:2 (2.71) BS08 CLA N/A N/A A0A679BXP6 39030906
    451893 8wck:2 (2.71) BS09 CLA N/A N/A A0A679BXP6 39030906
    451894 8wck:2 (2.71) BS10 KC2 N/A N/A A0A679BXP6 39030906
    451895 8wck:2 (2.71) BS11 CLA N/A N/A A0A679BXP6 39030906
    451896 8wck:2 (2.71) BS12 KC2 N/A N/A A0A679BXP6 39030906
    451897 8wck:2 (2.71) BS13 KC1 N/A N/A A0A679BXP6 39030906
    451898 8wck:2 (2.71) BS14 CLA N/A N/A A0A679BXP6 39030906
    451899 8wck:2 (2.71) BS15 KC1 N/A N/A A0A679BXP6 39030906
    451900 8wck:2 (2.71) BS16 CLA N/A N/A A0A679BXP6 39030906
    451901 8wck:2 (2.71) BS17 CLA N/A N/A A0A679BXP6 39030906
    451902 8wck:3 (2.71) BS01 CLA N/A N/A A0A679BXP6 39030906
    451903 8wck:3 (2.71) BS02 A86 N/A N/A A0A679BXP6 39030906
    451904 8wck:3 (2.71) BS03 A86 N/A N/A A0A679BXP6 39030906
    451905 8wck:3 (2.71) BS04 A86 N/A N/A A0A679BXP6 39030906
    451906 8wck:3 (2.71) BS05 A86 N/A N/A A0A679BXP6 39030906
    451907 8wck:3 (2.71) BS06 A86 N/A N/A A0A679BXP6 39030906
    451908 8wck:3 (2.71) BS07 A86 N/A N/A A0A679BXP6 39030906
    451909 8wck:3 (2.71) BS08 CLA N/A N/A A0A679BXP6 39030906
    451910 8wck:3 (2.71) BS09 CLA N/A N/A A0A679BXP6 39030906
    451911 8wck:3 (2.71) BS10 KC2 N/A N/A A0A679BXP6 39030906
    451912 8wck:3 (2.71) BS11 CLA N/A N/A A0A679BXP6 39030906
    451913 8wck:3 (2.71) BS12 KC2 N/A N/A A0A679BXP6 39030906
    451914 8wck:3 (2.71) BS13 KC1 N/A N/A A0A679BXP6 39030906
    451915 8wck:3 (2.71) BS14 CLA N/A N/A A0A679BXP6 39030906
    451916 8wck:3 (2.71) BS15 KC1 N/A N/A A0A679BXP6 39030906
    451917 8wck:3 (2.71) BS16 CLA N/A N/A A0A679BXP6 39030906
    451918 8wck:3 (2.71) BS17 CLA N/A N/A A0A679BXP6 39030906
    451919 8wck:4 (2.71) BS01 CLA N/A N/A A0A679BXP6 39030906
    451920 8wck:4 (2.71) BS02 CLA N/A N/A A0A679BXP6 39030906
    451921 8wck:4 (2.71) BS03 A86 N/A N/A A0A679BXP6 39030906
    451922 8wck:4 (2.71) BS04 A86 N/A N/A A0A679BXP6 39030906
    451923 8wck:4 (2.71) BS05 A86 N/A N/A A0A679BXP6 39030906
    451924 8wck:4 (2.71) BS06 A86 N/A N/A A0A679BXP6 39030906
    451925 8wck:4 (2.71) BS07 A86 N/A N/A A0A679BXP6 39030906
    451926 8wck:4 (2.71) BS08 CLA N/A N/A A0A679BXP6 39030906
    451927 8wck:4 (2.71) BS09 KC2 N/A N/A A0A679BXP6 39030906
    451928 8wck:4 (2.71) BS10 CLA N/A N/A A0A679BXP6 39030906
    451929 8wck:4 (2.71) BS11 KC2 N/A N/A A0A679BXP6 39030906
    451930 8wck:4 (2.71) BS12 KC1 N/A N/A A0A679BXP6 39030906
    451931 8wck:4 (2.71) BS13 CLA N/A N/A A0A679BXP6 39030906
    451932 8wck:4 (2.71) BS14 KC1 N/A N/A A0A679BXP6 39030906
    451933 8wck:4 (2.71) BS15 CLA N/A N/A A0A679BXP6 39030906
    451934 8wck:4 (2.71) BS16 CLA N/A N/A A0A679BXP6 39030906
    451935 8wcl:5 (2.65) BS01 A86 N/A N/A N/A 39030906
    451936 8wcl:5 (2.65) BS02 A86 N/A N/A N/A 39030906
    451937 8wcl:5 (2.65) BS03 A86 N/A N/A N/A 39030906
    451938 8wcl:5 (2.65) BS04 A86 N/A N/A N/A 39030906
    451939 8wcl:5 (2.65) BS05 A86 N/A N/A N/A 39030906
    451940 8wcl:5 (2.65) BS06 CLA N/A N/A N/A 39030906
    451941 8wcl:5 (2.65) BS07 CLA N/A N/A N/A 39030906
    451942 8wcl:5 (2.65) BS08 KC2 N/A N/A N/A 39030906
    451943 8wcl:5 (2.65) BS09 CLA N/A N/A N/A 39030906
    451944 8wcl:5 (2.65) BS10 KC2 N/A N/A N/A 39030906
    451945 8wcl:5 (2.65) BS11 KC1 N/A N/A N/A 39030906
    451946 8wcl:5 (2.65) BS12 CLA N/A N/A N/A 39030906
    451947 8wcl:5 (2.65) BS13 KC1 N/A N/A N/A 39030906
    451948 8wcl:5 (2.65) BS14 CLA N/A N/A N/A 39030906
    451949 8wcl:5 (2.65) BS15 CLA N/A N/A N/A 39030906
    451950 8wcl:5 (2.65) BS16 A86 N/A N/A N/A 39030906
    451951 8wcl:5 (2.65) BS17 A86 N/A N/A N/A 39030906
    451952 8wcl:5 (2.65) BS18 CLA N/A N/A N/A 39030906
    451953 8wcl:6 (2.65) BS01 A86 N/A N/A N/A 39030906
    451954 8wcl:6 (2.65) BS02 A86 N/A N/A N/A 39030906
    451955 8wcl:6 (2.65) BS03 A86 N/A N/A N/A 39030906
    451956 8wcl:6 (2.65) BS04 A86 N/A N/A N/A 39030906
    451957 8wcl:6 (2.65) BS05 CLA N/A N/A N/A 39030906
    451958 8wcl:6 (2.65) BS06 CLA N/A N/A N/A 39030906
    451959 8wcl:6 (2.65) BS07 KC2 N/A N/A N/A 39030906
    451960 8wcl:6 (2.65) BS08 CLA N/A N/A N/A 39030906
    451961 8wcl:6 (2.65) BS09 KC2 N/A N/A N/A 39030906
    451962 8wcl:6 (2.65) BS10 KC1 N/A N/A N/A 39030906
    451963 8wcl:6 (2.65) BS11 CLA N/A N/A N/A 39030906
    451964 8wcl:6 (2.65) BS12 KC1 N/A N/A N/A 39030906
    451965 8wcl:6 (2.65) BS13 CLA N/A N/A N/A 39030906
    451966 8wcl:6 (2.65) BS14 CLA N/A N/A N/A 39030906
    451967 8wcl:6 (2.65) BS15 A86 N/A N/A N/A 39030906
    451968 8wcl:6 (2.65) BS16 A86 N/A N/A N/A 39030906
    451969 8wcl:7 (2.65) BS01 CLA N/A N/A N/A 39030906
    451970 8wcl:7 (2.65) BS02 A86 N/A N/A N/A 39030906
    451971 8wcl:7 (2.65) BS03 A86 N/A N/A N/A 39030906
    451972 8wcl:7 (2.65) BS04 A86 N/A N/A N/A 39030906
    451973 8wcl:7 (2.65) BS05 A86 N/A N/A N/A 39030906
    451974 8wcl:7 (2.65) BS06 A86 N/A N/A N/A 39030906
    451975 8wcl:7 (2.65) BS07 A86 N/A N/A N/A 39030906
    451976 8wcl:7 (2.65) BS08 CLA N/A N/A N/A 39030906
    451977 8wcl:7 (2.65) BS09 CLA N/A N/A N/A 39030906
    451978 8wcl:7 (2.65) BS10 KC2 N/A N/A N/A 39030906
    451979 8wcl:7 (2.65) BS11 CLA N/A N/A N/A 39030906
    451980 8wcl:7 (2.65) BS12 KC2 N/A N/A N/A 39030906
    451981 8wcl:7 (2.65) BS13 KC1 N/A N/A N/A 39030906
    451982 8wcl:7 (2.65) BS14 CLA N/A N/A N/A 39030906
    451983 8wcl:7 (2.65) BS15 KC1 N/A N/A N/A 39030906
    451984 8wcl:7 (2.65) BS16 CLA N/A N/A N/A 39030906
    451985 8wcl:8 (2.65) BS01 CLA N/A N/A N/A 39030906
    451986 8wcl:8 (2.65) BS02 A86 N/A N/A N/A 39030906
    451987 8wcl:8 (2.65) BS03 A86 N/A N/A N/A 39030906
    451988 8wcl:8 (2.65) BS04 A86 N/A N/A N/A 39030906
    451989 8wcl:8 (2.65) BS05 A86 N/A N/A N/A 39030906
    451990 8wcl:8 (2.65) BS06 A86 N/A N/A N/A 39030906
    451991 8wcl:8 (2.65) BS07 A86 N/A N/A N/A 39030906
    451992 8wcl:8 (2.65) BS08 CLA N/A N/A N/A 39030906
    451993 8wcl:8 (2.65) BS09 KC2 N/A N/A N/A 39030906
    451994 8wcl:8 (2.65) BS10 CLA N/A N/A N/A 39030906
    451995 8wcl:8 (2.65) BS11 KC2 N/A N/A N/A 39030906
    451996 8wcl:8 (2.65) BS12 KC1 N/A N/A N/A 39030906
    451997 8wcl:8 (2.65) BS13 CLA N/A N/A N/A 39030906
    451998 8wcl:8 (2.65) BS14 KC1 N/A N/A N/A 39030906
    451999 8wcl:8 (2.65) BS15 CLA N/A N/A N/A 39030906
    452000 8wcl:8 (2.65) BS16 CLA N/A N/A N/A 39030906
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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