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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    451401 8wa2:H (3.0) BS07 GZL N/A N/A N/A 38552612
    451402 8wa2:I (3.0) BS01 GZL N/A N/A N/A 38552612
    451403 8wa2:I (3.0) BS02 FUB N/A N/A N/A 38552612
    451404 8wa2:I (3.0) BS03 GZL N/A N/A N/A 38552612
    451405 8wa2:I (3.0) BS04 GZL N/A N/A N/A 38552612
    451406 8wa5:A (2.51) BS01 ALF 7.2.2.19 GO:0000166 ... P19156 38072058
    451407 8wa5:A (2.51) BS03 CLR 7.2.2.19 GO:0000166 ... P19156 38072058
    451408 8wa7:A (1.63) BS01 THD 2.2.1.1 GO:0000287 ... P27302 N/A
    451409 8wa7:A (1.63) BS03 THD 2.2.1.1 GO:0000287 ... P27302 N/A
    451410 8wa7:B (1.63) BS01 THD 2.2.1.1 GO:0000287 ... P27302 N/A
    451411 8wa7:B (1.63) BS02 THD 2.2.1.1 GO:0000287 ... P27302 N/A
    451412 8wa8:A (1.48) BS02 TPP 2.2.1.1 GO:0000287 ... P29401 N/A
    451413 8wa9:A (1.5) BS02 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    451414 8wa9:A (1.5) BS03 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    451415 8wa9:B (1.5) BS01 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    451416 8wa9:B (1.5) BS03 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    451417 8waa:A (1.5) BS02 3GR 2.2.1.1 GO:0000287 ... P29401 N/A
    451418 8waa:A (1.5) BS03 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    451419 8waa:A (1.5) BS04 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    451420 8waa:B (1.5) BS01 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    451421 8waa:B (1.5) BS03 3GR 2.2.1.1 GO:0000287 ... P29401 N/A
    451422 8waa:B (1.5) BS04 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    451423 8wak:7 (5.47) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    451424 8wak:p (5.47) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    451425 8wal:7 (8.52) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    451426 8wal:p (8.52) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    451427 8wam:A (3.23) BS01 ATP ? GO:0005524 ... Q84TH5 38050355
    451428 8wam:A (3.23) BS03 ATP ? GO:0005524 ... Q84TH5 38050355
    451429 8wam:B (3.23) BS01 ATP ? GO:0005524 ... Q84TH5 38050355
    451430 8wam:B (3.23) BS02 ATP ? GO:0005524 ... Q84TH5 38050355
    451431 8wan:7 (6.07) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    451432 8wan:p (6.07) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    451433 8wao:7 (6.4) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    451434 8wao:p (6.4) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    451435 8wap:7 (5.85) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    451436 8wap:p (5.85) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    451437 8waq:7 (6.29) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    451438 8waq:p (6.29) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    451439 8war:7 (7.2) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    451440 8war:p (7.2) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    451441 8was:7 (6.13) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    451442 8was:p (6.13) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    451443 8wat:o (2.82) BS07 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    451444 8wat:p (2.82) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    451445 8wau:o (2.78) BS04 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    451446 8wau:p (2.78) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    451447 8wav:o (2.72) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    451448 8wav:p (2.72) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    451449 8waw:o (3.02) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    451450 8waw:p (3.02) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    451451 8wax:o (2.75) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    451452 8wax:p (2.75) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    451453 8way:o (2.85) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    451454 8way:p (2.85) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    451455 8waz:o (2.76) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    451456 8waz:p (2.76) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    451457 8wb0:o (2.94) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    451458 8wb0:p (2.94) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    451459 8wb1:A (1.72) BS01 GDP N/A N/A H2Q5M0 N/A
    451460 8wb1:A (1.72) BS02 W3T N/A N/A H2Q5M0 N/A
    451461 8wb2:A (1.9) BS01 HEM ? GO:0000325 ... Q9FGT8 38103756
    451462 8wb4:0 (2.47) BS01 CLA N/A N/A N/A 38806516
    451463 8wb4:0 (2.47) BS02 CLA N/A N/A N/A 38806516
    451464 8wb4:0 (2.47) BS03 CLA N/A N/A N/A 38806516
    451465 8wb4:0 (2.47) BS04 CLA N/A N/A N/A 38806516
    451466 8wb4:0 (2.47) BS05 CLA N/A N/A N/A 38806516
    451467 8wb4:0 (2.47) BS06 CLA N/A N/A N/A 38806516
    451468 8wb4:0 (2.47) BS07 CLA N/A N/A N/A 38806516
    451469 8wb4:0 (2.47) BS08 CLA N/A N/A N/A 38806516
    451470 8wb4:0 (2.47) BS09 CLA N/A N/A N/A 38806516
    451471 8wb4:0 (2.47) BS10 KC2 N/A N/A N/A 38806516
    451472 8wb4:0 (2.47) BS11 CLA N/A N/A N/A 38806516
    451473 8wb4:0 (2.47) BS12 CLA N/A N/A N/A 38806516
    451474 8wb4:0 (2.47) BS13 CLA N/A N/A N/A 38806516
    451475 8wb4:0 (2.47) BS14 IHT N/A N/A N/A 38806516
    451476 8wb4:0 (2.47) BS15 II0 N/A N/A N/A 38806516
    451477 8wb4:0 (2.47) BS16 II0 N/A N/A N/A 38806516
    451478 8wb4:0 (2.47) BS17 II0 N/A N/A N/A 38806516
    451479 8wb4:0 (2.47) BS18 IHT N/A N/A N/A 38806516
    451480 8wb4:0 (2.47) BS19 II0 N/A N/A N/A 38806516
    451481 8wb4:1 (2.47) BS01 CLA N/A N/A N/A 38806516
    451482 8wb4:1 (2.47) BS02 CLA N/A N/A N/A 38806516
    451483 8wb4:1 (2.47) BS03 CLA N/A N/A N/A 38806516
    451484 8wb4:1 (2.47) BS04 CLA N/A N/A N/A 38806516
    451485 8wb4:1 (2.47) BS05 CLA N/A N/A N/A 38806516
    451486 8wb4:1 (2.47) BS06 CLA N/A N/A N/A 38806516
    451487 8wb4:1 (2.47) BS07 CLA N/A N/A N/A 38806516
    451488 8wb4:1 (2.47) BS08 CLA N/A N/A N/A 38806516
    451489 8wb4:1 (2.47) BS09 CLA N/A N/A N/A 38806516
    451490 8wb4:1 (2.47) BS10 KC2 N/A N/A N/A 38806516
    451491 8wb4:1 (2.47) BS11 CLA N/A N/A N/A 38806516
    451492 8wb4:1 (2.47) BS12 CLA N/A N/A N/A 38806516
    451493 8wb4:1 (2.47) BS13 CLA N/A N/A N/A 38806516
    451494 8wb4:1 (2.47) BS14 II0 N/A N/A N/A 38806516
    451495 8wb4:1 (2.47) BS15 II3 N/A N/A N/A 38806516
    451496 8wb4:1 (2.47) BS16 II0 N/A N/A N/A 38806516
    451497 8wb4:1 (2.47) BS17 II0 N/A N/A N/A 38806516
    451498 8wb4:1 (2.47) BS18 IHT N/A N/A N/A 38806516
    451499 8wb4:1 (2.47) BS19 II0 N/A N/A N/A 38806516
    451500 8wb4:2 (2.47) BS01 II0 N/A N/A N/A 38806516
    451501 8wb4:2 (2.47) BS02 CLA N/A N/A N/A 38806516
    451502 8wb4:2 (2.47) BS03 CLA N/A N/A N/A 38806516
    451503 8wb4:2 (2.47) BS04 CLA N/A N/A N/A 38806516
    451504 8wb4:2 (2.47) BS05 CLA N/A N/A N/A 38806516
    451505 8wb4:2 (2.47) BS06 CLA N/A N/A N/A 38806516
    451506 8wb4:2 (2.47) BS07 CLA N/A N/A N/A 38806516
    451507 8wb4:2 (2.47) BS08 CLA N/A N/A N/A 38806516
    451508 8wb4:2 (2.47) BS09 CLA N/A N/A N/A 38806516
    451509 8wb4:2 (2.47) BS10 KC2 N/A N/A N/A 38806516
    451510 8wb4:2 (2.47) BS11 CLA N/A N/A N/A 38806516
    451511 8wb4:2 (2.47) BS12 CLA N/A N/A N/A 38806516
    451512 8wb4:2 (2.47) BS13 II0 N/A N/A N/A 38806516
    451513 8wb4:2 (2.47) BS14 II0 N/A N/A N/A 38806516
    451514 8wb4:2 (2.47) BS15 II0 N/A N/A N/A 38806516
    451515 8wb4:2 (2.47) BS16 IHT N/A N/A N/A 38806516
    451516 8wb4:2 (2.47) BS17 II0 N/A N/A N/A 38806516
    451517 8wb4:3 (2.47) BS01 CLA N/A N/A N/A 38806516
    451518 8wb4:3 (2.47) BS02 II0 N/A N/A N/A 38806516
    451519 8wb4:3 (2.47) BS03 CLA N/A N/A N/A 38806516
    451520 8wb4:3 (2.47) BS04 CLA N/A N/A N/A 38806516
    451521 8wb4:3 (2.47) BS05 CLA N/A N/A N/A 38806516
    451522 8wb4:3 (2.47) BS06 CLA N/A N/A N/A 38806516
    451523 8wb4:3 (2.47) BS07 CLA N/A N/A N/A 38806516
    451524 8wb4:3 (2.47) BS08 CLA N/A N/A N/A 38806516
    451525 8wb4:3 (2.47) BS09 CLA N/A N/A N/A 38806516
    451526 8wb4:3 (2.47) BS10 CLA N/A N/A N/A 38806516
    451527 8wb4:3 (2.47) BS11 CLA N/A N/A N/A 38806516
    451528 8wb4:3 (2.47) BS12 CLA N/A N/A N/A 38806516
    451529 8wb4:3 (2.47) BS13 II0 N/A N/A N/A 38806516
    451530 8wb4:3 (2.47) BS14 II0 N/A N/A N/A 38806516
    451531 8wb4:3 (2.47) BS15 II0 N/A N/A N/A 38806516
    451532 8wb4:3 (2.47) BS16 8CT N/A N/A N/A 38806516
    451533 8wb4:4 (2.47) BS01 CLA N/A N/A N/A 38806516
    451534 8wb4:4 (2.47) BS02 CLA N/A N/A N/A 38806516
    451535 8wb4:4 (2.47) BS03 CLA N/A N/A N/A 38806516
    451536 8wb4:4 (2.47) BS04 CLA N/A N/A N/A 38806516
    451537 8wb4:4 (2.47) BS05 CLA N/A N/A N/A 38806516
    451538 8wb4:4 (2.47) BS06 CLA N/A N/A N/A 38806516
    451539 8wb4:4 (2.47) BS07 CLA N/A N/A N/A 38806516
    451540 8wb4:4 (2.47) BS08 CLA N/A N/A N/A 38806516
    451541 8wb4:4 (2.47) BS09 CLA N/A N/A N/A 38806516
    451542 8wb4:4 (2.47) BS10 KC2 N/A N/A N/A 38806516
    451543 8wb4:4 (2.47) BS11 CLA N/A N/A N/A 38806516
    451544 8wb4:4 (2.47) BS12 CLA N/A N/A N/A 38806516
    451545 8wb4:4 (2.47) BS13 CLA N/A N/A N/A 38806516
    451546 8wb4:4 (2.47) BS14 IHT N/A N/A N/A 38806516
    451547 8wb4:4 (2.47) BS15 II0 N/A N/A N/A 38806516
    451548 8wb4:4 (2.47) BS16 II0 N/A N/A N/A 38806516
    451549 8wb4:4 (2.47) BS17 IHT N/A N/A N/A 38806516
    451550 8wb4:4 (2.47) BS18 II0 N/A N/A N/A 38806516
    451551 8wb4:4 (2.47) BS19 II0 N/A N/A N/A 38806516
    451552 8wb4:5 (2.47) BS01 CLA N/A N/A N/A 38806516
    451553 8wb4:5 (2.47) BS02 II0 N/A N/A N/A 38806516
    451554 8wb4:5 (2.47) BS03 CLA N/A N/A N/A 38806516
    451555 8wb4:5 (2.47) BS04 CLA N/A N/A N/A 38806516
    451556 8wb4:5 (2.47) BS05 CLA N/A N/A N/A 38806516
    451557 8wb4:5 (2.47) BS06 CLA N/A N/A N/A 38806516
    451558 8wb4:5 (2.47) BS07 CLA N/A N/A N/A 38806516
    451559 8wb4:5 (2.47) BS08 CLA N/A N/A N/A 38806516
    451560 8wb4:5 (2.47) BS09 CLA N/A N/A N/A 38806516
    451561 8wb4:5 (2.47) BS10 CLA N/A N/A N/A 38806516
    451562 8wb4:5 (2.47) BS11 CLA N/A N/A N/A 38806516
    451563 8wb4:5 (2.47) BS12 KC2 N/A N/A N/A 38806516
    451564 8wb4:5 (2.47) BS13 CLA N/A N/A N/A 38806516
    451565 8wb4:5 (2.47) BS14 CLA N/A N/A N/A 38806516
    451566 8wb4:5 (2.47) BS15 II0 N/A N/A N/A 38806516
    451567 8wb4:5 (2.47) BS16 II0 N/A N/A N/A 38806516
    451568 8wb4:5 (2.47) BS17 II0 N/A N/A N/A 38806516
    451569 8wb4:5 (2.47) BS18 IHT N/A N/A N/A 38806516
    451570 8wb4:5 (2.47) BS19 II0 N/A N/A N/A 38806516
    451571 8wb4:5 (2.47) BS20 CLA N/A N/A N/A 38806516
    451572 8wb4:6 (2.47) BS01 II0 N/A N/A N/A 38806516
    451573 8wb4:6 (2.47) BS02 CLA N/A N/A N/A 38806516
    451574 8wb4:6 (2.47) BS03 CLA N/A N/A N/A 38806516
    451575 8wb4:6 (2.47) BS04 CLA N/A N/A N/A 38806516
    451576 8wb4:6 (2.47) BS05 CLA N/A N/A N/A 38806516
    451577 8wb4:6 (2.47) BS06 KC2 N/A N/A N/A 38806516
    451578 8wb4:6 (2.47) BS07 CLA N/A N/A N/A 38806516
    451579 8wb4:6 (2.47) BS08 CLA N/A N/A N/A 38806516
    451580 8wb4:6 (2.47) BS09 CLA N/A N/A N/A 38806516
    451581 8wb4:6 (2.47) BS10 CLA N/A N/A N/A 38806516
    451582 8wb4:6 (2.47) BS11 II0 N/A N/A N/A 38806516
    451583 8wb4:6 (2.47) BS12 II3 N/A N/A N/A 38806516
    451584 8wb4:6 (2.47) BS13 II0 N/A N/A N/A 38806516
    451585 8wb4:6 (2.47) BS14 8CT N/A N/A N/A 38806516
    451586 8wb4:7 (2.47) BS01 CLA N/A N/A N/A 38806516
    451587 8wb4:7 (2.47) BS02 CLA N/A N/A N/A 38806516
    451588 8wb4:7 (2.47) BS03 CLA N/A N/A N/A 38806516
    451589 8wb4:7 (2.47) BS04 CLA N/A N/A N/A 38806516
    451590 8wb4:7 (2.47) BS05 CLA N/A N/A N/A 38806516
    451591 8wb4:7 (2.47) BS06 CLA N/A N/A N/A 38806516
    451592 8wb4:7 (2.47) BS07 CLA N/A N/A N/A 38806516
    451593 8wb4:7 (2.47) BS08 CLA N/A N/A N/A 38806516
    451594 8wb4:7 (2.47) BS09 CLA N/A N/A N/A 38806516
    451595 8wb4:7 (2.47) BS10 KC2 N/A N/A N/A 38806516
    451596 8wb4:7 (2.47) BS11 CLA N/A N/A N/A 38806516
    451597 8wb4:7 (2.47) BS12 CLA N/A N/A N/A 38806516
    451598 8wb4:7 (2.47) BS13 CLA N/A N/A N/A 38806516
    451599 8wb4:7 (2.47) BS14 II0 N/A N/A N/A 38806516
    451600 8wb4:7 (2.47) BS15 II3 N/A N/A N/A 38806516
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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