Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 2245 2246 2247 2248 2249 2250 2251 2252 2253 2254 2255 2256 2257 2258 2259 2260 2261 2262 2263 2264 2265 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    450801 8w2j:H (3.1) BS04 ATP N/A N/A P17858 39183237
    450802 8w2j:H (3.1) BS05 ATP N/A N/A P17858 39183237
    450803 8w2k:A (2.45) BS01 HEM N/A N/A P48775 39106326
    450804 8w2k:A (2.45) BS02 ZIQ N/A N/A P48775 39106326
    450805 8w2k:A (2.45) BS03 A1AE7 N/A N/A P48775 39106326
    450806 8w2k:A (2.45) BS04 A1AE7 N/A N/A P48775 39106326
    450807 8w2k:B (2.45) BS01 A1AE7 N/A N/A P48775 39106326
    450808 8w2k:B (2.45) BS02 HEM N/A N/A P48775 39106326
    450809 8w2k:B (2.45) BS03 ZIQ N/A N/A P48775 39106326
    450810 8w2k:B (2.45) BS04 A1AE7 N/A N/A P48775 39106326
    450811 8w2k:C (2.45) BS01 HEM N/A N/A P48775 39106326
    450812 8w2k:C (2.45) BS02 ZIQ N/A N/A P48775 39106326
    450813 8w2k:C (2.45) BS03 A1AE7 N/A N/A P48775 39106326
    450814 8w2k:C (2.45) BS04 A1AE7 N/A N/A P48775 39106326
    450815 8w2k:D (2.45) BS01 A1AE7 N/A N/A P48775 39106326
    450816 8w2k:D (2.45) BS02 HEM N/A N/A P48775 39106326
    450817 8w2k:D (2.45) BS03 ZIQ N/A N/A P48775 39106326
    450818 8w2k:D (2.45) BS04 A1AE7 N/A N/A P48775 39106326
    450819 8w2l:A (2.45) BS01 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    450820 8w2l:A (2.45) BS02 M05 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    450821 8w2l:A (2.45) BS03 DU0 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    450822 8w2l:B (2.45) BS01 DU0 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    450823 8w2l:B (2.45) BS02 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    450824 8w2l:B (2.45) BS03 M05 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    450825 8w2l:C (2.45) BS01 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    450826 8w2l:C (2.45) BS02 DU0 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    450827 8w2l:C (2.45) BS03 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    450828 8w2l:C (2.45) BS04 M05 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    450829 8w2l:D (2.45) BS01 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    450830 8w2l:D (2.45) BS02 DU0 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    450831 8w2l:D (2.45) BS03 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    450832 8w2l:D (2.45) BS04 M05 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    450833 8w2r:A (3.23) BS08 DLU ? GO:0003676 ... P12497 38582148
    450834 8w2r:I (3.23) BS08 DLU ? GO:0003676 ... P12497 38582148
    450835 8w31:A (2.5) BS07 A1AE9 N/A N/A Q9JK66 N/A
    450836 8w31:C (2.5) BS01 A1AE9 N/A N/A P0CG47 N/A
    450837 8w34:A (2.83) BS05 DLU ? GO:0003676 ... P12497 38582148
    450838 8w34:I (2.83) BS05 DLU ? GO:0003676 ... P12497 38582148
    450839 8w3a:A (1.8) BS01 HEM ? GO:0015671 ... A9DF82 38959524
    450840 8w3a:A (1.8) BS02 A1ADT ? GO:0015671 ... A9DF82 38959524
    450841 8w3a:B (1.8) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    450842 8w3a:B (1.8) BS02 HEM ? GO:0015671 ... A9DF82 38959524
    450843 8w3a:C (1.8) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    450844 8w3a:C (1.8) BS02 HEM ? GO:0015671 ... A9DF82 38959524
    450845 8w3a:D (1.8) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    450846 8w3a:D (1.8) BS02 HEM ? GO:0015671 ... A9DF82 38959524
    450847 8w3w:A (1.976) BS01 A1AFO 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    450848 8w3w:B (1.976) BS01 A1AFO 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    450849 8w3w:C (1.976) BS01 A1AFO 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    450850 8w3w:D (1.976) BS01 A1AFO 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    450851 8w3x:A (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    450852 8w3x:B (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    450853 8w3x:C (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    450854 8w3x:D (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    450855 8w41:A (3.54) BS01 ADP ? GO:0000146 ... Q9UM54 38331992
    450856 8w42:A (1.45) BS01 STL ? N/A P02766 37910439
    450857 8w42:B (1.45) BS01 STL ? N/A P02766 37910439
    450858 8w43:A (1.302) BS01 PIT ? N/A P02766 37910439
    450859 8w43:B (1.302) BS01 PIT ? N/A P02766 37910439
    450860 8w44:A (1.399) BS01 EZE ? N/A P02766 37910439
    450861 8w44:B (1.399) BS01 EZE ? N/A P02766 37910439
    450862 8w44:B (1.399) BS02 EZE ? N/A P02766 37910439
    450863 8w45:A (1.1) BS01 8KZ ? N/A P02766 37910439
    450864 8w45:B (1.1) BS01 8KZ ? N/A P02766 37910439
    450865 8w46:A (1.35) BS01 3RL ? N/A P02766 37910439
    450866 8w46:B (1.35) BS01 3RL ? N/A P02766 37910439
    450867 8w46:B (1.35) BS02 3RL ? N/A P02766 37910439
    450868 8w47:A (1.4) BS01 P5O ? N/A P02766 37910439
    450869 8w47:B (1.4) BS01 P5O ? N/A P02766 37910439
    450870 8w48:A (1.19) BS01 PIT ? N/A P02766 37910439
    450871 8w48:B (1.19) BS01 PIT ? N/A P02766 37910439
    450872 8w49:A (1.77) BS01 NAP N/A N/A O88844 N/A
    450873 8w49:A (1.77) BS02 NAP N/A N/A O88844 N/A
    450874 8w49:B (1.77) BS01 NAP N/A N/A O88844 N/A
    450875 8w49:B (1.77) BS02 NAP N/A N/A O88844 N/A
    450876 8w49:C (1.77) BS01 NAP N/A N/A O88844 N/A
    450877 8w49:D (1.77) BS01 NAP N/A N/A O88844 N/A
    450878 8w4b:A (2.152) BS01 STR N/A GO:0005634 ... Q6DCU6 38965213
    450879 8w4c:A (2.676) BS01 STR N/A GO:0005634 ... Q6DCU6 38965213
    450880 8w4l:A (3.1) BS01 GAL N/A N/A P0DOX5 38938812
    450881 8w4l:B (3.1) BS01 BMA N/A N/A P0DOX5 38938812
    450882 8w4l:B (3.1) BS02 GAL N/A N/A P0DOX5 38938812
    450883 8w4m:A (2.18) BS01 BMA N/A N/A P0DOX5 38938812
    450884 8w4m:A (2.18) BS02 GAL N/A N/A P0DOX5 38938812
    450885 8w4n:A (3.1) BS01 BMA N/A N/A N/A 38938812
    450886 8w4n:A (3.1) BS02 MAN N/A N/A N/A 38938812
    450887 8w4o:5 (3.23) BS01 ET4 ? GO:0009416 ... B5YLU3 38071196
    450888 8w4o:5 (3.23) BS02 A86 ? GO:0009416 ... B5YLU3 38071196
    450889 8w4o:5 (3.23) BS03 CLA ? GO:0009416 ... B5YLU3 38071196
    450890 8w4o:5 (3.23) BS04 CLA ? GO:0009416 ... B5YLU3 38071196
    450891 8w4o:5 (3.23) BS05 CLA ? GO:0009416 ... B5YLU3 38071196
    450892 8w4o:5 (3.23) BS06 CLA ? GO:0009416 ... B5YLU3 38071196
    450893 8w4o:5 (3.23) BS07 CLA ? GO:0009416 ... B5YLU3 38071196
    450894 8w4o:5 (3.23) BS08 CLA ? GO:0009416 ... B5YLU3 38071196
    450895 8w4o:5 (3.23) BS09 CLA ? GO:0009416 ... B5YLU3 38071196
    450896 8w4o:5 (3.23) BS10 CLA ? GO:0009416 ... B5YLU3 38071196
    450897 8w4o:5 (3.23) BS11 CLA ? GO:0009416 ... B5YLU3 38071196
    450898 8w4o:6 (3.23) BS01 CLA ? GO:0009416 ... B8BX93 38071196
    450899 8w4o:6 (3.23) BS02 CLA ? GO:0009416 ... B8BX93 38071196
    450900 8w4o:6 (3.23) BS03 A86 ? GO:0009416 ... B8BX93 38071196
    450901 8w4o:6 (3.23) BS04 DD6 ? GO:0009416 ... B8BX93 38071196
    450902 8w4o:6 (3.23) BS05 DD6 ? GO:0009416 ... B8BX93 38071196
    450903 8w4o:6 (3.23) BS06 CLA ? GO:0009416 ... B8BX93 38071196
    450904 8w4o:6 (3.23) BS07 CLA ? GO:0009416 ... B8BX93 38071196
    450905 8w4o:6 (3.23) BS08 CLA ? GO:0009416 ... B8BX93 38071196
    450906 8w4o:6 (3.23) BS09 CLA ? GO:0009416 ... B8BX93 38071196
    450907 8w4o:6 (3.23) BS10 CLA ? GO:0009416 ... B8BX93 38071196
    450908 8w4o:6 (3.23) BS11 CLA ? GO:0009416 ... B8BX93 38071196
    450909 8w4o:6 (3.23) BS12 CLA ? GO:0009416 ... B8BX93 38071196
    450910 8w4o:6 (3.23) BS13 CLA ? GO:0009416 ... B8BX93 38071196
    450911 8w4o:6 (3.23) BS14 CLA ? GO:0009416 ... B8BX93 38071196
    450912 8w4o:6 (3.23) BS15 CLA ? GO:0009416 ... B8BX93 38071196
    450913 8w4o:6 (3.23) BS16 CLA ? GO:0009416 ... B8BX93 38071196
    450914 8w4o:6 (3.23) BS17 CLA ? GO:0009416 ... B8BX93 38071196
    450915 8w4o:7 (3.23) BS01 A86 N/A GO:0009765 ... N/A 38071196
    450916 8w4o:7 (3.23) BS02 A86 N/A GO:0009765 ... N/A 38071196
    450917 8w4o:7 (3.23) BS03 DD6 N/A GO:0009765 ... N/A 38071196
    450918 8w4o:7 (3.23) BS04 DD6 N/A GO:0009765 ... N/A 38071196
    450919 8w4o:7 (3.23) BS05 CLA N/A GO:0009765 ... N/A 38071196
    450920 8w4o:7 (3.23) BS06 CLA N/A GO:0009765 ... N/A 38071196
    450921 8w4o:7 (3.23) BS07 CLA N/A GO:0009765 ... N/A 38071196
    450922 8w4o:7 (3.23) BS08 CLA N/A GO:0009765 ... N/A 38071196
    450923 8w4o:7 (3.23) BS09 CLA N/A GO:0009765 ... N/A 38071196
    450924 8w4o:7 (3.23) BS10 CLA N/A GO:0009765 ... N/A 38071196
    450925 8w4o:7 (3.23) BS11 CLA N/A GO:0009765 ... N/A 38071196
    450926 8w4o:7 (3.23) BS12 CLA N/A GO:0009765 ... N/A 38071196
    450927 8w4o:7 (3.23) BS13 CLA N/A GO:0009765 ... N/A 38071196
    450928 8w4o:7 (3.23) BS14 CLA N/A GO:0009765 ... N/A 38071196
    450929 8w4o:7 (3.23) BS15 CLA N/A GO:0009765 ... N/A 38071196
    450930 8w4o:7 (3.23) BS16 CLA N/A GO:0009765 ... N/A 38071196
    450931 8w4o:7 (3.23) BS17 CLA N/A GO:0009765 ... N/A 38071196
    450932 8w4o:7 (3.23) BS18 CLA N/A GO:0009765 ... N/A 38071196
    450933 8w4p:3 (3.48) BS01 A86 ? GO:0009416 ... B8BVI1 38071196
    450934 8w4p:3 (3.48) BS02 DD6 ? GO:0009416 ... B8BVI1 38071196
    450935 8w4p:3 (3.48) BS03 CLA ? GO:0009416 ... B8BVI1 38071196
    450936 8w4p:3 (3.48) BS04 CLA ? GO:0009416 ... B8BVI1 38071196
    450937 8w4p:3 (3.48) BS05 CLA ? GO:0009416 ... B8BVI1 38071196
    450938 8w4p:3 (3.48) BS06 CLA ? GO:0009416 ... B8BVI1 38071196
    450939 8w4p:3 (3.48) BS07 CLA ? GO:0009416 ... B8BVI1 38071196
    450940 8w4p:3 (3.48) BS08 CLA ? GO:0009416 ... B8BVI1 38071196
    450941 8w4p:3 (3.48) BS09 CLA ? GO:0009416 ... B8BVI1 38071196
    450942 8w4p:3 (3.48) BS10 CLA ? GO:0009416 ... B8BVI1 38071196
    450943 8w4p:3 (3.48) BS11 CLA ? GO:0009416 ... B8BVI1 38071196
    450944 8w4p:4 (3.48) BS01 A86 N/A N/A N/A 38071196
    450945 8w4p:4 (3.48) BS02 A86 N/A N/A N/A 38071196
    450946 8w4p:4 (3.48) BS03 CLA N/A N/A N/A 38071196
    450947 8w4p:4 (3.48) BS04 CLA N/A N/A N/A 38071196
    450948 8w4p:4 (3.48) BS05 CLA N/A N/A N/A 38071196
    450949 8w4p:4 (3.48) BS06 CLA N/A N/A N/A 38071196
    450950 8w4p:4 (3.48) BS07 CLA N/A N/A N/A 38071196
    450951 8w4p:4 (3.48) BS08 CLA N/A N/A N/A 38071196
    450952 8w4p:4 (3.48) BS09 CLA N/A N/A N/A 38071196
    450953 8w4p:p (3.48) BS01 CLA ? GO:0009416 ... B8BUU4 38071196
    450954 8w4p:p (3.48) BS02 CLA ? GO:0009416 ... B8BUU4 38071196
    450955 8w4p:p (3.48) BS03 CLA ? GO:0009416 ... B8BUU4 38071196
    450956 8w4p:p (3.48) BS04 CLA ? GO:0009416 ... B8BUU4 38071196
    450957 8w4p:p (3.48) BS05 CLA ? GO:0009416 ... B8BUU4 38071196
    450958 8w4p:p (3.48) BS06 CLA ? GO:0009416 ... B8BUU4 38071196
    450959 8w4p:p (3.48) BS07 CLA ? GO:0009416 ... B8BUU4 38071196
    450960 8w4p:p (3.48) BS08 CLA ? GO:0009416 ... B8BUU4 38071196
    450961 8w4p:p (3.48) BS09 A86 ? GO:0009416 ... B8BUU4 38071196
    450962 8w4p:p (3.48) BS10 DD6 ? GO:0009416 ... B8BUU4 38071196
    450963 8w4q:A (1.55) BS02 3NG 3.1.4.53 GO:0004114 ... Q08499 37918035
    450964 8w4q:B (1.55) BS02 3NG 3.1.4.53 GO:0004114 ... Q08499 37918035
    450965 8w4r:A (1.37) BS01 AJR 3.1.4.53 GO:0004114 ... Q08499 37918035
    450966 8w4r:B (1.37) BS01 AJR 3.1.4.53 GO:0004114 ... Q08499 37918035
    450967 8w4s:A (1.848) BS02 AJR 3.1.4.35 GO:0004114 ... O76074 37918035
    450968 8w4t:A (2.199) BS02 VZF 3.1.4.35 GO:0004114 ... O76074 37918035
    450969 8w4u:A (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    450970 8w4u:A (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    450971 8w4u:B (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    450972 8w4u:B (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    450973 8w4u:D (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    450974 8w4u:D (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    450975 8w4u:G (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    450976 8w4u:G (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    450977 8w4v:A (1.81) BS01 Q9O 3.6.4.10 GO:0005524 ... P07900 38665669
    450978 8w53:A (2.42816) BS01 UDP 2.4.1.- GO:0000166 ... B6EWZ1 38816433
    450979 8w53:B (2.42816) BS01 UDP 2.4.1.- GO:0000166 ... B6EWZ1 38816433
    450980 8w5c:A (2.3) BS01 VZO N/A N/A P22455 38348819
    450981 8w5c:B (2.3) BS01 VZO N/A N/A P22455 38348819
    450982 8w5k:F (3.6) BS01 46E ? GO:0005515 ... P23644 38360717
    450983 8w5k:I (3.6) BS01 46E ? GO:0005515 ... P23644 38360717
    450984 8w5z:A (1.55) BS02 A3P 2.8.2.20 GO:0006478 ... B7Q097 38354785
    450985 8w5z:A (1.55) BS03 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    450986 8w5z:A (1.55) BS04 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    450987 8w5z:A (1.55) BS05 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    450988 8w5z:A (1.55) BS06 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    450989 8w5z:C (1.55) BS03 A3P 2.8.2.20 GO:0006478 ... B7Q097 38354785
    450990 8w6c:A (2.7) BS03 Y01 ? GO:0005515 ... Q13183 38552027
    450991 8w6c:B (2.7) BS01 Y01 ? GO:0005515 ... Q13183 38552027
    450992 8w6c:B (2.7) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    450993 8w6d:A (2.5) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    450994 8w6d:B (2.5) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    450995 8w6g:A (3.3) BS01 VIJ ? GO:0005515 ... Q13183 38552027
    450996 8w6g:A (3.3) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    450997 8w6g:B (3.3) BS01 VIJ ? GO:0005515 ... Q13183 38552027
    450998 8w6g:B (3.3) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    450999 8w6h:A (3.1) BS01 SO4 ? GO:0005886 ... Q9BZW2 38552027
    451000 8w6h:A (3.1) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218