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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    450601 8w06:D (2.06) BS01 PGH N/A N/A N/A 39145435
    450602 8w06:E (2.06) BS01 PGH N/A N/A N/A 39145435
    450603 8w06:F (2.06) BS01 PGH N/A N/A N/A 39145435
    450604 8w06:G (2.06) BS01 PGH N/A N/A N/A 39145435
    450605 8w06:H (2.06) BS01 PGH N/A N/A N/A 39145435
    450606 8w07:A (1.83) BS01 A1AHY ? N/A P03372 38830107
    450607 8w07:B (1.83) BS01 A1AHZ ? N/A P03372 38830107
    450608 8w07:C (1.83) BS01 A1AHZ ? N/A P03372 38830107
    450609 8w07:D (1.83) BS01 A1AHZ ? N/A P03372 38830107
    450610 8w09:A (3.2) BS08 DLU ? GO:0003676 ... P12497 38582148
    450611 8w09:I (3.2) BS08 DLU ? GO:0003676 ... P12497 38582148
    450612 8w0b:A (2.3) BS01 YHK 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450613 8w0b:B (2.3) BS01 YHK 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450614 8w0b:C (2.3) BS01 YHK 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450615 8w0c:A (2.35) BS01 YHF 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450616 8w0c:B (2.35) BS01 YHF 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450617 8w0c:C (2.35) BS01 YHF 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450618 8w0d:A (2.7) BS01 YHQ 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450619 8w0d:B (2.7) BS01 YHQ 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450620 8w0d:C (2.7) BS01 YHQ 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450621 8w0h:A (2.95) BS01 YHQ 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450622 8w0h:B (2.95) BS01 YHQ 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450623 8w0h:C (2.95) BS01 YHQ 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450624 8w0j:A (2.85) BS01 YHT 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450625 8w0j:B (2.85) BS01 YHT 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450626 8w0j:C (2.85) BS01 YHT 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450627 8w0k:A (1.42) BS01 FAD N/A N/A F7X6I3 39133178
    450628 8w0k:A (1.42) BS02 GHO N/A N/A F7X6I3 39133178
    450629 8w0k:B (1.42) BS01 FAD N/A N/A F7X6I3 39133178
    450630 8w0k:B (1.42) BS02 GHO N/A N/A F7X6I3 39133178
    450631 8w0l:A (2.75) BS01 YHT 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450632 8w0l:A (2.75) BS02 COA 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450633 8w0l:B (2.75) BS01 YHT 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450634 8w0l:C (2.75) BS01 YHT 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450635 8w0l:C (2.75) BS02 COA 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450636 8w0m:A (3.1) BS01 7RM 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450637 8w0m:B (3.1) BS01 7RM 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450638 8w0m:C (3.1) BS01 7RM 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    450639 8w0n:A (1.37) BS01 NAD N/A N/A N/A N/A
    450640 8w0n:B (1.37) BS01 NAD N/A N/A N/A N/A
    450641 8w0o:A (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    450642 8w0o:B (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    450643 8w0o:C (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    450644 8w0o:D (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    450645 8w0o:E (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    450646 8w0o:F (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    450647 8w0o:G (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    450648 8w0o:H (1.66) BS01 NAD N/A GO:0004316 ... M9TFE3 N/A
    450649 8w0r:A (2.8) BS01 A1AEU N/A GO:0000247 ... Q15125 38470227
    450650 8w0r:B (2.8) BS01 A1AEU N/A GO:0000247 ... Q15125 38470227
    450651 8w0s:A (2.8) BS01 A1AEV N/A GO:0000247 ... Q15125 38470227
    450652 8w0s:B (2.8) BS01 A1AEV N/A GO:0000247 ... Q15125 38470227
    450653 8w0t:A (2.5) BS01 FAD N/A GO:0000062 ... P28330 38839792
    450654 8w0t:A (2.5) BS02 FAD N/A GO:0000062 ... P28330 38839792
    450655 8w0t:B (2.5) BS01 FAD N/A GO:0000062 ... P28330 38839792
    450656 8w0t:B (2.5) BS02 FAD N/A GO:0000062 ... P28330 38839792
    450657 8w0t:C (2.5) BS01 FAD N/A GO:0000062 ... P28330 38839792
    450658 8w0t:C (2.5) BS02 FAD N/A GO:0000062 ... P28330 38839792
    450659 8w0t:D (2.5) BS01 FAD N/A GO:0000062 ... P28330 38839792
    450660 8w0t:D (2.5) BS02 FAD N/A GO:0000062 ... P28330 38839792
    450661 8w0u:A (2.8) BS01 FAD N/A GO:0000062 ... P28330 38839792
    450662 8w0u:A (2.8) BS02 CAA N/A GO:0000062 ... P28330 38839792
    450663 8w0u:A (2.8) BS03 FAD N/A GO:0000062 ... P28330 38839792
    450664 8w0u:B (2.8) BS01 FAD N/A GO:0000062 ... P28330 38839792
    450665 8w0u:B (2.8) BS02 FAD N/A GO:0000062 ... P28330 38839792
    450666 8w0u:B (2.8) BS03 CAA N/A GO:0000062 ... P28330 38839792
    450667 8w0u:C (2.8) BS01 FAD N/A GO:0000062 ... P28330 38839792
    450668 8w0u:C (2.8) BS02 FAD N/A GO:0000062 ... P28330 38839792
    450669 8w0u:D (2.8) BS01 FAD N/A GO:0000062 ... P28330 38839792
    450670 8w0u:D (2.8) BS02 FAD N/A GO:0000062 ... P28330 38839792
    450671 8w0z:A (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    450672 8w0z:A (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    450673 8w0z:B (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    450674 8w0z:B (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    450675 8w0z:C (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    450676 8w0z:C (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    450677 8w0z:D (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    450678 8w0z:D (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    450679 8w0z:E (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    450680 8w0z:E (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    450681 8w0z:F (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    450682 8w0z:F (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    450683 8w0z:G (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    450684 8w0z:G (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    450685 8w0z:H (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    450686 8w0z:H (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    450687 8w13:A (1.81) BS01 A1AEW N/A N/A Q9H7Z6 39236793
    450688 8w14:A (1.6) BS01 SO4 N/A N/A N/A 39073218
    450689 8w14:B (1.6) BS01 SO4 N/A N/A N/A 39073218
    450690 8w1h:A (2.1) BS01 HEM N/A N/A P48775 39106326
    450691 8w1h:A (2.1) BS02 ZIQ N/A N/A P48775 39106326
    450692 8w1h:A (2.1) BS03 A1AEY N/A N/A P48775 39106326
    450693 8w1h:A (2.1) BS04 A1AEY N/A N/A P48775 39106326
    450694 8w1h:B (2.1) BS01 A1AEY N/A N/A P48775 39106326
    450695 8w1h:B (2.1) BS02 HEM N/A N/A P48775 39106326
    450696 8w1h:B (2.1) BS03 ZIQ N/A N/A P48775 39106326
    450697 8w1h:B (2.1) BS04 A1AEY N/A N/A P48775 39106326
    450698 8w1h:C (2.1) BS01 HEM N/A N/A P48775 39106326
    450699 8w1h:C (2.1) BS02 ZIQ N/A N/A P48775 39106326
    450700 8w1h:C (2.1) BS03 A1AEY N/A N/A P48775 39106326
    450701 8w1h:C (2.1) BS04 A1AEY N/A N/A P48775 39106326
    450702 8w1h:D (2.1) BS01 A1AEY N/A N/A P48775 39106326
    450703 8w1h:D (2.1) BS02 HEM N/A N/A P48775 39106326
    450704 8w1h:D (2.1) BS03 ZIQ N/A N/A P48775 39106326
    450705 8w1h:D (2.1) BS04 A1AEY N/A N/A P48775 39106326
    450706 8w1l:A (2.26) BS01 A1AE3 2.7.10.1 N/A P07333 38746878
    450707 8w1v:A (3.0) BS01 A1AE2 N/A GO:0003796 ... P00720
    P07550    		 38952152
    450708 8w1v:A (3.0) BS02 AV0 N/A GO:0003796 ... P00720
    P07550    		 38952152
    450709 8w1v:B (3.0) BS01 A1AE2 N/A GO:0003796 ... P00720
    P07550    		 38952152
    450710 8w1v:B (3.0) BS02 AV0 N/A GO:0003796 ... P00720
    P07550    		 38952152
    450711 8w2d:A (2.7) BS01 PNS N/A N/A A0A1I9RH13 38908753
    450712 8w2d:B (2.7) BS01 PNS N/A N/A A0A1I9RH13 38908753
    450713 8w2f:L (3.1) BS01 A1AE6 N/A N/A Q8IJT1 39084225
    450714 8w2f:M (3.1) BS01 A1AE6 N/A GO:0000502 ... A0A5K1K7U1 39084225
    450715 8w2f:Z (3.1) BS01 A1AE6 N/A N/A Q8IJT1 39084225
    450716 8w2f:a (3.1) BS01 A1AE6 N/A GO:0000502 ... A0A5K1K7U1 39084225
    450717 8w2g:A (3.0) BS01 F6P N/A N/A P17858 39183237
    450718 8w2g:A (3.0) BS02 ADP N/A N/A P17858 39183237
    450719 8w2g:A (3.0) BS03 ADP N/A N/A P17858 39183237
    450720 8w2g:A (3.0) BS04 ADP N/A N/A P17858 39183237
    450721 8w2g:A (3.0) BS05 FBP N/A N/A P17858 39183237
    450722 8w2g:A (3.0) BS06 F6P N/A N/A P17858 39183237
    450723 8w2g:A (3.0) BS07 FBP N/A N/A P17858 39183237
    450724 8w2g:B (3.0) BS01 F6P N/A N/A P17858 39183237
    450725 8w2g:B (3.0) BS02 FBP N/A N/A P17858 39183237
    450726 8w2g:B (3.0) BS03 F6P N/A N/A P17858 39183237
    450727 8w2g:B (3.0) BS04 ADP N/A N/A P17858 39183237
    450728 8w2g:B (3.0) BS05 ADP N/A N/A P17858 39183237
    450729 8w2g:B (3.0) BS06 ADP N/A N/A P17858 39183237
    450730 8w2g:B (3.0) BS07 FBP N/A N/A P17858 39183237
    450731 8w2g:C (3.0) BS01 F6P N/A N/A P17858 39183237
    450732 8w2g:C (3.0) BS02 F6P N/A N/A P17858 39183237
    450733 8w2g:C (3.0) BS03 ADP N/A N/A P17858 39183237
    450734 8w2g:C (3.0) BS04 ADP N/A N/A P17858 39183237
    450735 8w2g:C (3.0) BS05 ADP N/A N/A P17858 39183237
    450736 8w2g:C (3.0) BS06 FBP N/A N/A P17858 39183237
    450737 8w2g:D (3.0) BS01 F6P N/A N/A P17858 39183237
    450738 8w2g:D (3.0) BS02 ADP N/A N/A P17858 39183237
    450739 8w2g:D (3.0) BS03 ADP N/A N/A P17858 39183237
    450740 8w2g:D (3.0) BS04 ADP N/A N/A P17858 39183237
    450741 8w2g:D (3.0) BS05 FBP N/A N/A P17858 39183237
    450742 8w2g:D (3.0) BS06 F6P N/A N/A P17858 39183237
    450743 8w2h:A (2.6) BS01 FBP N/A N/A P17858 39183237
    450744 8w2h:A (2.6) BS02 ATP N/A N/A P17858 39183237
    450745 8w2h:A (2.6) BS03 ATP N/A N/A P17858 39183237
    450746 8w2h:A (2.6) BS04 ATP N/A N/A P17858 39183237
    450747 8w2h:A (2.6) BS05 FBP N/A N/A P17858 39183237
    450748 8w2h:B (2.6) BS01 FBP N/A N/A P17858 39183237
    450749 8w2h:B (2.6) BS02 FBP N/A N/A P17858 39183237
    450750 8w2h:B (2.6) BS03 ATP N/A N/A P17858 39183237
    450751 8w2h:B (2.6) BS04 ATP N/A N/A P17858 39183237
    450752 8w2h:B (2.6) BS05 ATP N/A N/A P17858 39183237
    450753 8w2h:C (2.6) BS01 FBP N/A N/A P17858 39183237
    450754 8w2h:C (2.6) BS02 ATP N/A N/A P17858 39183237
    450755 8w2h:C (2.6) BS03 ATP N/A N/A P17858 39183237
    450756 8w2h:C (2.6) BS04 ATP N/A N/A P17858 39183237
    450757 8w2h:C (2.6) BS05 FBP N/A N/A P17858 39183237
    450758 8w2h:D (2.6) BS01 FBP N/A N/A P17858 39183237
    450759 8w2h:D (2.6) BS02 FBP N/A N/A P17858 39183237
    450760 8w2h:D (2.6) BS03 ATP N/A N/A P17858 39183237
    450761 8w2h:D (2.6) BS04 ATP N/A N/A P17858 39183237
    450762 8w2h:D (2.6) BS05 ATP N/A N/A P17858 39183237
    450763 8w2j:A (3.1) BS01 FBP N/A N/A P17858 39183237
    450764 8w2j:A (3.1) BS02 ATP N/A N/A P17858 39183237
    450765 8w2j:A (3.1) BS03 ATP N/A N/A P17858 39183237
    450766 8w2j:A (3.1) BS04 ATP N/A N/A P17858 39183237
    450767 8w2j:A (3.1) BS05 FBP N/A N/A P17858 39183237
    450768 8w2j:B (3.1) BS01 FBP N/A N/A P17858 39183237
    450769 8w2j:B (3.1) BS02 FBP N/A N/A P17858 39183237
    450770 8w2j:B (3.1) BS03 ATP N/A N/A P17858 39183237
    450771 8w2j:B (3.1) BS04 ATP N/A N/A P17858 39183237
    450772 8w2j:B (3.1) BS05 ATP N/A N/A P17858 39183237
    450773 8w2j:C (3.1) BS01 FBP N/A N/A P17858 39183237
    450774 8w2j:C (3.1) BS02 ATP N/A N/A P17858 39183237
    450775 8w2j:C (3.1) BS03 ATP N/A N/A P17858 39183237
    450776 8w2j:C (3.1) BS04 ATP N/A N/A P17858 39183237
    450777 8w2j:C (3.1) BS05 FBP N/A N/A P17858 39183237
    450778 8w2j:D (3.1) BS01 FBP N/A N/A P17858 39183237
    450779 8w2j:D (3.1) BS02 FBP N/A N/A P17858 39183237
    450780 8w2j:D (3.1) BS03 ATP N/A N/A P17858 39183237
    450781 8w2j:D (3.1) BS04 ATP N/A N/A P17858 39183237
    450782 8w2j:D (3.1) BS05 ATP N/A N/A P17858 39183237
    450783 8w2j:E (3.1) BS01 FBP N/A N/A P17858 39183237
    450784 8w2j:E (3.1) BS02 ATP N/A N/A P17858 39183237
    450785 8w2j:E (3.1) BS03 ATP N/A N/A P17858 39183237
    450786 8w2j:E (3.1) BS04 ATP N/A N/A P17858 39183237
    450787 8w2j:E (3.1) BS05 FBP N/A N/A P17858 39183237
    450788 8w2j:F (3.1) BS01 FBP N/A N/A P17858 39183237
    450789 8w2j:F (3.1) BS02 FBP N/A N/A P17858 39183237
    450790 8w2j:F (3.1) BS03 ATP N/A N/A P17858 39183237
    450791 8w2j:F (3.1) BS04 ATP N/A N/A P17858 39183237
    450792 8w2j:F (3.1) BS05 ATP N/A N/A P17858 39183237
    450793 8w2j:G (3.1) BS01 FBP N/A N/A P17858 39183237
    450794 8w2j:G (3.1) BS02 ATP N/A N/A P17858 39183237
    450795 8w2j:G (3.1) BS03 ATP N/A N/A P17858 39183237
    450796 8w2j:G (3.1) BS04 ATP N/A N/A P17858 39183237
    450797 8w2j:G (3.1) BS05 FBP N/A N/A P17858 39183237
    450798 8w2j:H (3.1) BS01 FBP N/A N/A P17858 39183237
    450799 8w2j:H (3.1) BS02 FBP N/A N/A P17858 39183237
    450800 8w2j:H (3.1) BS03 ATP N/A N/A P17858 39183237
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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