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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    450401 8vtl:M (3.05) BS05 SPO ? GO:0009772 ... P0C0Y9 N/A
    450402 8vtl:M (3.05) BS06 BPH ? GO:0009772 ... P0C0Y9 N/A
    450403 8vtl:M (3.05) BS07 BCL ? GO:0009772 ... P0C0Y9 N/A
    450404 8vtm:L (3.51) BS01 BCL ? GO:0009772 ... Q3J1A5 N/A
    450405 8vtm:L (3.51) BS02 BCL ? GO:0009772 ... Q3J1A5 N/A
    450406 8vtm:L (3.51) BS04 BPH ? GO:0009772 ... Q3J1A5 N/A
    450407 8vtm:L (3.51) BS05 BPH ? GO:0009772 ... Q3J1A5 N/A
    450408 8vtm:L (3.51) BS06 BCL ? GO:0009772 ... Q3J1A5 N/A
    450409 8vtm:M (3.51) BS01 BCL ? GO:0009772 ... Q3J1A6 N/A
    450410 8vtm:M (3.51) BS02 BCL ? GO:0009772 ... Q3J1A6 N/A
    450411 8vtm:M (3.51) BS04 BPH ? GO:0009772 ... Q3J1A6 N/A
    450412 8vtm:M (3.51) BS05 SPO ? GO:0009772 ... Q3J1A6 N/A
    450413 8vtm:M (3.51) BS06 BPH ? GO:0009772 ... Q3J1A6 N/A
    450414 8vtm:M (3.51) BS07 BCL ? GO:0009772 ... Q3J1A6 N/A
    450415 8vtn:L (3.57) BS01 BCL ? GO:0009772 ... P0C0Y8 N/A
    450416 8vtn:L (3.57) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    450417 8vtn:L (3.57) BS04 BPH ? GO:0009772 ... P0C0Y8 N/A
    450418 8vtn:L (3.57) BS05 BPH ? GO:0009772 ... P0C0Y8 N/A
    450419 8vtn:L (3.57) BS06 BCL ? GO:0009772 ... P0C0Y8 N/A
    450420 8vtn:M (3.57) BS01 BCL ? GO:0009772 ... P0C0Y9 N/A
    450421 8vtn:M (3.57) BS02 BCL ? GO:0009772 ... P0C0Y9 N/A
    450422 8vtn:M (3.57) BS04 BPH ? GO:0009772 ... P0C0Y9 N/A
    450423 8vtn:M (3.57) BS05 SPO ? GO:0009772 ... P0C0Y9 N/A
    450424 8vtn:M (3.57) BS06 BPH ? GO:0009772 ... P0C0Y9 N/A
    450425 8vtn:M (3.57) BS07 BCL ? GO:0009772 ... P0C0Y9 N/A
    450426 8vto:L (3.09) BS01 BPH ? GO:0009772 ... P0C0Y8 N/A
    450427 8vto:L (3.09) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    450428 8vto:L (3.09) BS03 BPH ? GO:0009772 ... P0C0Y8 N/A
    450429 8vto:L (3.09) BS04 BCL ? GO:0009772 ... P0C0Y8 N/A
    450430 8vto:L (3.09) BS06 BCL ? GO:0009772 ... P0C0Y8 N/A
    450431 8vto:M (3.09) BS01 BPH ? GO:0009772 ... P0C0Y9 N/A
    450432 8vto:M (3.09) BS02 BCL ? GO:0009772 ... P0C0Y9 N/A
    450433 8vto:M (3.09) BS03 BPH ? GO:0009772 ... P0C0Y9 N/A
    450434 8vto:M (3.09) BS04 BCL ? GO:0009772 ... P0C0Y9 N/A
    450435 8vto:M (3.09) BS06 SPO ? GO:0009772 ... P0C0Y9 N/A
    450436 8vto:M (3.09) BS07 BCL ? GO:0009772 ... P0C0Y9 N/A
    450437 8vtq:A (2.05) BS01 HEM N/A N/A P48775 39106326
    450438 8vtq:A (2.05) BS02 ZIQ N/A N/A P48775 39106326
    450439 8vtq:A (2.05) BS03 A1ADX N/A N/A P48775 39106326
    450440 8vtq:A (2.05) BS04 A1ADX N/A N/A P48775 39106326
    450441 8vtq:B (2.05) BS01 A1ADX N/A N/A P48775 39106326
    450442 8vtq:B (2.05) BS02 HEM N/A N/A P48775 39106326
    450443 8vtq:B (2.05) BS03 ZIQ N/A N/A P48775 39106326
    450444 8vtq:B (2.05) BS04 A1ADX N/A N/A P48775 39106326
    450445 8vtq:C (2.05) BS01 HEM N/A N/A P48775 39106326
    450446 8vtq:C (2.05) BS02 ZIQ N/A N/A P48775 39106326
    450447 8vtq:C (2.05) BS03 A1ADX N/A N/A P48775 39106326
    450448 8vtq:C (2.05) BS04 A1ADX N/A N/A P48775 39106326
    450449 8vtq:D (2.05) BS01 A1ADX N/A N/A P48775 39106326
    450450 8vtq:D (2.05) BS02 HEM N/A N/A P48775 39106326
    450451 8vtq:D (2.05) BS03 ZIQ N/A N/A P48775 39106326
    450452 8vtq:D (2.05) BS04 A1ADX N/A N/A P48775 39106326
    450453 8vts:B (1.91) BS01 RIO ? GO:0003677 ... Q60954 39183959
    450454 8vts:D (1.91) BS01 RIO ? GO:0003677 ... Q60954 39183959
    450455 8vtt:D (2.45) BS01 RIO ? GO:0003677 ... Q60954 39183959
    450456 8vtu:1d (2.4) BS02 SF4 N/A N/A P80373 39039256
    450457 8vtu:2d (2.4) BS02 SF4 N/A N/A P80373 39039256
    450458 8vtv:1d (2.55) BS02 SF4 N/A N/A P80373 39039256
    450459 8vtv:2d (2.55) BS03 SF4 N/A N/A P80373 39039256
    450460 8vtw:1F (2.35) BS06 ARG N/A N/A Q5SHN9 39039256
    450461 8vtw:1d (2.35) BS03 SF4 N/A N/A P80373 39039256
    450462 8vtw:2d (2.35) BS02 SF4 N/A N/A P80373 39039256
    450463 8vtx:1d (2.4) BS02 SF4 N/A N/A P80373 39039256
    450464 8vtx:2d (2.4) BS03 SF4 N/A N/A P80373 39039256
    450465 8vty:1F (2.6) BS15 ARG N/A N/A Q5SHN9 39039256
    450466 8vty:1d (2.6) BS02 SF4 N/A N/A P80373 39039256
    450467 8vty:2d (2.6) BS02 SF4 N/A N/A P80373 39039256
    450468 8vug:A (2.05) BS01 HEM N/A N/A P48775 39106326
    450469 8vug:A (2.05) BS02 ZIQ N/A N/A P48775 39106326
    450470 8vug:A (2.05) BS03 A1AD1 N/A N/A P48775 39106326
    450471 8vug:B (2.05) BS01 A1AD1 N/A N/A P48775 39106326
    450472 8vug:B (2.05) BS02 HEM N/A N/A P48775 39106326
    450473 8vug:B (2.05) BS03 ZIQ N/A N/A P48775 39106326
    450474 8vug:B (2.05) BS04 A1AD1 N/A N/A P48775 39106326
    450475 8vug:C (2.05) BS01 HEM N/A N/A P48775 39106326
    450476 8vug:C (2.05) BS02 ZIQ N/A N/A P48775 39106326
    450477 8vug:C (2.05) BS03 A1AD1 N/A N/A P48775 39106326
    450478 8vug:C (2.05) BS04 A1AD1 N/A N/A P48775 39106326
    450479 8vug:D (2.05) BS01 HEM N/A N/A P48775 39106326
    450480 8vug:D (2.05) BS02 ZIQ N/A N/A P48775 39106326
    450481 8vug:D (2.05) BS03 A1AD1 N/A N/A P48775 39106326
    450482 8vuw:A (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    450483 8vuw:A (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    450484 8vuw:B (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    450485 8vuw:B (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    450486 8vuw:C (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    450487 8vuw:C (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    450488 8vuw:D (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    450489 8vuw:D (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    450490 8vuw:E (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    450491 8vuw:E (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    450492 8vv3:A (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    450493 8vv3:B (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    450494 8vv3:C (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    450495 8vv3:D (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    450496 8vw0:A (1.7) BS01 AMP 6.3.2.9 GO:0005515 ... P14900 N/A
    450497 8vw1:A (1.7) BS01 ADP 6.3.2.9 GO:0005515 ... P14900 N/A
    450498 8vw2:A (1.95) BS04 ATP 6.3.2.9 GO:0005515 ... P14900 N/A
    450499 8vw4:A (2.4) BS02 A1AEG N/A N/A Q13191 38894924
    450500 8vw4:A (2.4) BS03 A1AEG N/A N/A Q13191 38894924
    450501 8vw4:B (2.4) BS01 A1AEG N/A N/A Q13191 38894924
    450502 8vw4:B (2.4) BS03 A1AEG N/A N/A Q13191 38894924
    450503 8vw5:A (1.76) BS03 A1AD4 N/A N/A Q13191 38894924
    450504 8vw5:B (1.76) BS02 A1AD4 N/A N/A Q13191 38894924
    450505 8vx0:A (3.05) BS01 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    450506 8vx0:A (3.05) BS02 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    450507 8vx0:A (3.05) BS03 HEM 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    450508 8vxb:A (1.85) BS01 5I0 N/A N/A D8L9Z0 39246239
    450509 8vxd:A (2.47) BS01 A1AD7 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 38628796
    450510 8vxd:B (2.47) BS01 A1AD7 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 38628796
    450511 8vxe:A (1.85) BS01 A1AD9 2.7.11.24 GO:0000077 ... Q16539 38628796
    450512 8vxe:A (1.85) BS02 A1AD9 2.7.11.24 GO:0000077 ... Q16539 38628796
    450513 8vxf:A (2.28) BS01 A1AD8 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 38628796
    450514 8vxf:B (2.28) BS01 A1AD8 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 38628796
    450515 8vxu:A (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    450516 8vxu:B (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    450517 8vxu:C (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    450518 8vxu:C (2.29) BS02 16A ? GO:0005886 ... U2EQ00 38865266
    450519 8vxu:D (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    450520 8vxu:E (2.29) BS01 16A N/A N/A N/A 38865266
    450521 8vxy:B (3.19) BS03 ATP ? GO:0003676 ... A0A426EXV0 38464307
    450522 8vy3:B (2.98) BS01 SF4 N/A N/A P49643 N/A
    450523 8vy7:R (2.68) BS01 A1AEI ? GO:0001580 ... Q9NYV8 38600377
    450524 8vy7:R (2.68) BS02 CLR ? GO:0001580 ... Q9NYV8 38600377
    450525 8vy9:R (2.88) BS01 A1AEI ? GO:0001580 ... Q9NYV8 38600377
    450526 8vy9:R (2.88) BS02 CLR ? GO:0001580 ... Q9NYV8 38600377
    450527 8vyl:A (2.02) BS01 HEM N/A GO:0004601 ... P69905 38880764
    450528 8vyl:B (2.02) BS01 HEM N/A GO:0004601 ... P68871 38880764
    450529 8vyl:C (2.02) BS01 HEM N/A GO:0004601 ... P69905 38880764
    450530 8vyl:D (2.02) BS01 HEM N/A GO:0004601 ... P68871 38880764
    450531 8vyt:A (1.61) BS01 A1AHV ? N/A P03372 38830107
    450532 8vyt:B (1.61) BS01 A1AHV ? N/A P03372 38830107
    450533 8vyt:C (1.61) BS01 A1AHV ? N/A P03372 38830107
    450534 8vyt:D (1.61) BS01 A1AHV ? N/A P03372 38830107
    450535 8vyx:A (1.69) BS01 A1AHU ? N/A P03372 38830107
    450536 8vyx:B (1.69) BS01 A1AHU ? N/A P03372 38830107
    450537 8vyx:C (1.69) BS01 A1AHU ? N/A P03372 38830107
    450538 8vyx:D (1.69) BS01 A1AHU ? N/A P03372 38830107
    450539 8vz0:A (1.86) BS01 A1AHO ? N/A P03372 38830107
    450540 8vz0:B (1.86) BS01 A1AHO ? N/A P03372 38830107
    450541 8vz0:C (1.86) BS01 A1AHO ? N/A P03372 38830107
    450542 8vz0:D (1.86) BS01 A1AHO ? N/A P03372 38830107
    450543 8vz1:A (1.82) BS01 A1AHS ? N/A P03372 38830107
    450544 8vz1:B (1.82) BS01 A1AHS ? N/A P03372 38830107
    450545 8vz1:C (1.82) BS01 A1AHS ? N/A P03372 38830107
    450546 8vz1:D (1.82) BS01 A1AHS ? N/A P03372 38830107
    450547 8vz4:A (1.25) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    450548 8vz4:B (1.25) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    450549 8vz7:A (2.53) BS01 HEM 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    450550 8vz7:A (2.53) BS02 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    450551 8vz7:A (2.53) BS03 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    450552 8vz7:A (2.53) BS04 FRU 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    450553 8vz8:A (3.45) BS01 2LJ ? N/A Q8HWB0 38537698
    450554 8vz9:A (3.4) BS01 2LJ ? N/A Q8HWB0 38537698
    450555 8vzl:A (2.41) BS04 AMP 6.5.1.1 N/A P18858 38522520
    450556 8vzm:A (2.51) BS04 AMP 6.5.1.1 N/A P18858 38522520
    450557 8vzn:A (2.77) BS01 CHT ? GO:0001701 ... Q91X85 38693257
    450558 8vzo:A (2.49) BS01 CHT ? GO:0001701 ... Q91X85 38693257
    450559 8vzp:A (1.72) BS01 A1AHW ? N/A P03372 38830107
    450560 8vzp:B (1.72) BS01 A1AHW ? N/A P03372 38830107
    450561 8vzp:C (1.72) BS01 A1AHW ? N/A P03372 38830107
    450562 8vzp:D (1.72) BS01 A1AHW ? N/A P03372 38830107
    450563 8vzq:A (1.75) BS01 A1AHX ? N/A P03372 38830107
    450564 8vzq:B (1.75) BS01 A1AHX ? N/A P03372 38830107
    450565 8vzq:C (1.75) BS01 A1AHX ? N/A P03372 38830107
    450566 8vzq:D (1.75) BS01 A1AHX ? N/A P03372 38830107
    450567 8vzr:A (1.64) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    450568 8vzr:A (1.64) BS02 MWJ N/A GO:0004601 ... Q9NAV8 38959050
    450569 8vzr:A (1.64) BS03 OXY N/A GO:0004601 ... Q9NAV8 38959050
    450570 8vzr:B (1.64) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    450571 8vzr:B (1.64) BS02 MWJ N/A GO:0004601 ... Q9NAV8 38959050
    450572 8vzr:B (1.64) BS03 OXY N/A GO:0004601 ... Q9NAV8 38959050
    450573 8vzv:AAA (2.29) BS01 HEM N/A N/A P48775 39106326
    450574 8vzv:AAA (2.29) BS02 ZIQ N/A N/A P48775 39106326
    450575 8vzv:AAA (2.29) BS03 A1AER N/A N/A P48775 39106326
    450576 8vzv:BBB (2.29) BS01 A1AER N/A N/A P48775 39106326
    450577 8vzv:BBB (2.29) BS02 HEM N/A N/A P48775 39106326
    450578 8vzv:BBB (2.29) BS03 ZIQ N/A N/A P48775 39106326
    450579 8vzv:BBB (2.29) BS04 A1AER N/A N/A P48775 39106326
    450580 8vzv:CCC (2.29) BS01 HEM N/A N/A P48775 39106326
    450581 8vzv:CCC (2.29) BS02 ZIQ N/A N/A P48775 39106326
    450582 8vzv:CCC (2.29) BS03 A1AER N/A N/A P48775 39106326
    450583 8vzv:DDD (2.29) BS01 HEM N/A N/A P48775 39106326
    450584 8vzv:DDD (2.29) BS02 ZIQ N/A N/A P48775 39106326
    450585 8vzv:DDD (2.29) BS03 A1AER N/A N/A P48775 39106326
    450586 8vzx:C (1.47) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    450587 8vzx:D (1.47) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    450588 8vzy:A (1.34) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    450589 8vzz:A (1.22) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    450590 8vzz:B (1.22) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    450591 8w00:A (1.23) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    450592 8w00:B (1.23) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    450593 8w02:B (1.499) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    450594 8w03:A (1.68) BS01 OBT ? N/A P03372 38830107
    450595 8w03:B (1.68) BS01 OBT ? N/A P03372 38830107
    450596 8w03:C (1.68) BS01 OBT ? N/A P03372 38830107
    450597 8w03:D (1.68) BS01 OBT ? N/A P03372 38830107
    450598 8w06:A (2.06) BS01 PGH N/A N/A N/A 39145435
    450599 8w06:B (2.06) BS01 PGH N/A N/A N/A 39145435
    450600 8w06:C (2.06) BS01 PGH N/A N/A N/A 39145435
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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