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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    450201 8vph:B (3.18) BS03 Q8Y N/A N/A A0A031WG99 N/A
    450202 8vph:C (3.18) BS03 Q8Y N/A N/A A0A031WG99 N/A
    450203 8vpn:A (2.7) BS01 BL1 N/A N/A J3QSS1 39143061
    450204 8vpn:A (2.7) BS02 ATP N/A N/A J3QSS1 39143061
    450205 8vpn:B (2.7) BS01 ATP N/A N/A J3QSS1 39143061
    450206 8vpo:A (1.66) BS01 SF4 4.1.-.- GO:0003824 ... A0A1M6T2I7 38295270
    450207 8vpo:A (1.66) BS02 SF4 4.1.-.- GO:0003824 ... A0A1M6T2I7 38295270
    450208 8vpp:A (2.9) BS01 KLT N/A N/A J3QSS1 39143061
    450209 8vq1:A (1.3) BS01 QCV ? GO:0006355 ... Q4K977 38536910
    450210 8vq2:A (3.829) BS03 A1AC6 N/A N/A I7GY94 39140041
    450211 8vq2:B (3.829) BS03 A1AC6 N/A N/A I7GY94 39140041
    450212 8vq3:A (1.84) BS01 A1AC4 2.7.11.22 GO:0000082 ... P24941 38293178
    450213 8vq3:B (1.84) BS01 A1AC4 ? N/A P24864 38293178
    450214 8vq4:A (1.9) BS01 A1AC5 2.7.11.22 GO:0000082 ... P24941 38293178
    450215 8vq4:B (1.9) BS01 A1AC5 ? N/A P24864 38293178
    450216 8vql:A (2.29) BS01 A1ADD ? N/A P03452 38753503
    450217 8vql:B (2.29) BS01 A1ADD ? N/A P03452 38753503
    450218 8vqm:A (2.21) BS01 A1ADU ? N/A P03452 38753503
    450219 8vqm:B (2.21) BS01 A1ADU ? N/A P03452 38753503
    450220 8vqn:A (2.21) BS01 A1ADV ? N/A P03452 38753503
    450221 8vqn:B (2.21) BS01 A1ADV ? N/A P03452 38753503
    450222 8vqq:A (2.05) BS01 A1ADC ? N/A P03452 38753503
    450223 8vqq:B (2.05) BS01 A1ADC ? N/A P03452 38753503
    450224 8vqr:A (2.565) BS01 FUC 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    450225 8vqr:A (2.565) BS02 BMA 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    450226 8vqr:A (2.565) BS03 FUC 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    450227 8vqr:B (2.565) BS01 MAN 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    450228 8vqr:B (2.565) BS02 FUC 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    450229 8vqw:C (2.2) BS01 COA 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    450230 8vqw:D (2.2) BS01 COA 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    450231 8vqx:A (1.35) BS01 A1ADM N/A N/A P0DTD1 38518735
    450232 8vqy:A (2.82) BS01 ABU N/A N/A P47870 38898000
    450233 8vqy:A (2.82) BS02 A1ADG N/A N/A P47870 38898000
    450234 8vqy:B (2.82) BS01 ABU N/A N/A P14867 38898000
    450235 8vqy:B (2.82) BS02 A1ADG N/A N/A P14867 38898000
    450236 8vqy:B (2.82) BS03 Q3G N/A N/A P14867 38898000
    450237 8vqy:C (2.82) BS01 ABU N/A N/A P47870 38898000
    450238 8vqy:C (2.82) BS02 A1ADG N/A N/A P47870 38898000
    450239 8vqy:C (2.82) BS03 Q3G N/A N/A P47870 38898000
    450240 8vqy:D (2.82) BS01 ABU N/A N/A P14867 38898000
    450241 8vqy:D (2.82) BS02 Q3G N/A N/A P14867 38898000
    450242 8vqy:D (2.82) BS03 A1ADG N/A N/A P14867 38898000
    450243 8vqy:E (2.82) BS01 MAN N/A N/A P18507 38898000
    450244 8vqy:E (2.82) BS02 MAN N/A N/A P18507 38898000
    450245 8vqy:E (2.82) BS03 A1ADG N/A N/A P18507 38898000
    450246 8vqz:A (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    450247 8vqz:B (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    450248 8vqz:C (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    450249 8vqz:D (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    450250 8vr0:A (2.25) BS01 5GP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    450251 8vr0:B (2.25) BS01 5GP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    450252 8vr0:C (2.25) BS01 5GP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    450253 8vr1:A (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    450254 8vr1:B (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    450255 8vr1:C (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    450256 8vr1:D (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    450257 8vr2:A (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    450258 8vr2:A (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    450259 8vr2:B (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    450260 8vr2:B (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    450261 8vr2:C (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    450262 8vr2:C (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    450263 8vr2:D (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    450264 8vr2:D (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    450265 8vr3:B (2.0) BS01 A1ADI ? GO:0000271 ... Q1QD52 N/A
    450266 8vr5:A (2.2) BS01 PMP ? GO:0000271 ... Q1QD52 N/A
    450267 8vr5:A (2.2) BS02 A1ADI ? GO:0000271 ... Q1QD52 N/A
    450268 8vr5:B (2.2) BS01 PDG ? GO:0000271 ... Q1QD52 N/A
    450269 8vr5:B (2.2) BS02 A1ADI ? GO:0000271 ... Q1QD52 N/A
    450270 8vr5:C (2.2) BS01 PDG ? GO:0000271 ... Q1QD52 N/A
    450271 8vr5:C (2.2) BS02 PDG ? GO:0000271 ... Q1QD52 N/A
    450272 8vr5:D (2.2) BS01 PDG ? GO:0000271 ... Q1QD52 N/A
    450273 8vr5:D (2.2) BS02 PDG ? GO:0000271 ... Q1QD52 N/A
    450274 8vr6:A (1.9) BS01 5NG ? GO:0016740 ... Q1QD51 N/A
    450275 8vr7:A (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    450276 8vr7:A (1.9) BS02 ACO ? GO:0016740 ... Q1QD51 N/A
    450277 8vr7:B (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    450278 8vr7:B (1.9) BS02 COA ? GO:0016740 ... Q1QD51 N/A
    450279 8vr7:B (1.9) BS03 EP1 ? GO:0016740 ... Q1QD51 N/A
    450280 8vr7:B (1.9) BS04 PAP ? GO:0016740 ... Q1QD51 N/A
    450281 8vr7:C (1.9) BS01 COA ? GO:0016740 ... Q1QD51 N/A
    450282 8vr7:C (1.9) BS02 ACO ? GO:0016740 ... Q1QD51 N/A
    450283 8vr7:D (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    450284 8vr7:D (1.9) BS02 COA ? GO:0016740 ... Q1QD51 N/A
    450285 8vr7:E (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    450286 8vr7:E (1.9) BS02 ACO ? GO:0016740 ... Q1QD51 N/A
    450287 8vr7:E (1.9) BS03 PAP ? GO:0016740 ... Q1QD51 N/A
    450288 8vr7:F (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    450289 8vr7:F (1.9) BS02 COA ? GO:0016740 ... Q1QD51 N/A
    450290 8vr9:A (3.06) BS02 MOV N/A N/A P04439 38781214
    450291 8vr9:D (3.06) BS01 MOV N/A N/A N/A 38781214
    450292 8vr9:E (3.06) BS01 MOV N/A N/A N/A 38781214
    450293 8vra:A (3.12) BS02 MOV N/A N/A P04439 38781214
    450294 8vra:D (3.12) BS01 MOV N/A N/A N/A 38781214
    450295 8vra:E (3.12) BS01 MOV N/A N/A N/A 38781214
    450296 8vrb:D (3.25) BS01 MOV N/A N/A N/A 38781214
    450297 8vrb:E (3.25) BS01 MOV N/A N/A N/A 38781214
    450298 8vre:A (1.83) BS01 NAI N/A GO:0004735 ... P32322 39133178
    450299 8vre:A (1.83) BS02 FPK N/A GO:0004735 ... P32322 39133178
    450300 8vre:A (1.83) BS03 FPK N/A GO:0004735 ... P32322 39133178
    450301 8vre:B (1.83) BS01 FPK N/A GO:0004735 ... P32322 39133178
    450302 8vre:B (1.83) BS02 NAI N/A GO:0004735 ... P32322 39133178
    450303 8vre:B (1.83) BS03 FPK N/A GO:0004735 ... P32322 39133178
    450304 8vre:C (1.83) BS01 NAI N/A GO:0004735 ... P32322 39133178
    450305 8vre:C (1.83) BS02 FPK N/A GO:0004735 ... P32322 39133178
    450306 8vre:C (1.83) BS03 FPK N/A GO:0004735 ... P32322 39133178
    450307 8vre:D (1.83) BS01 NAI N/A GO:0004735 ... P32322 39133178
    450308 8vre:D (1.83) BS02 FPK N/A GO:0004735 ... P32322 39133178
    450309 8vre:E (1.83) BS01 FPK N/A GO:0004735 ... P32322 39133178
    450310 8vrn:A (2.57) BS01 ABU N/A N/A P47870 38898000
    450311 8vrn:A (2.57) BS02 A1ADN N/A N/A P47870 38898000
    450312 8vrn:B (2.57) BS01 ABU N/A N/A P14867 38898000
    450313 8vrn:B (2.57) BS02 A1ADN N/A N/A P14867 38898000
    450314 8vrn:B (2.57) BS03 Q3G N/A N/A P14867 38898000
    450315 8vrn:C (2.57) BS01 ABU N/A N/A P47870 38898000
    450316 8vrn:C (2.57) BS02 A1ADN N/A N/A P47870 38898000
    450317 8vrn:C (2.57) BS03 Q3G N/A N/A P47870 38898000
    450318 8vrn:D (2.57) BS01 MAN N/A N/A P14867 38898000
    450319 8vrn:D (2.57) BS02 ABU N/A N/A P14867 38898000
    450320 8vrn:D (2.57) BS03 A1ADN N/A N/A P14867 38898000
    450321 8vrn:D (2.57) BS04 Q3G N/A N/A P14867 38898000
    450322 8vrn:E (2.57) BS01 MAN N/A N/A P18507 38898000
    450323 8vrn:E (2.57) BS02 MAN N/A N/A P18507 38898000
    450324 8vrv:A (1.61) BS01 FUC N/A N/A A0A168DBN0 N/A
    450325 8vsg:A (2.071) BS01 A1AD0 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38518735
    450326 8vsg:B (2.071) BS01 A1AD0 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38518735
    450327 8vsh:A (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    450328 8vsh:B (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    450329 8vsh:C (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    450330 8vsh:D (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    450331 8vsi:A (3.1) BS02 AOV 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742
    450332 8vsi:A (3.1) BS03 AOV 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742
    450333 8vsi:B (3.1) BS01 AOV 3.6.3.- GO:0005524 ... A0A376P7T7 38540742
    450334 8vsi:B (3.1) BS03 AOV 3.6.3.- GO:0005524 ... A0A376P7T7 38540742
    450335 8vsk:AAA (1.515) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    450336 8vsk:AAA (1.515) BS02 OXY N/A GO:0004601 ... Q9NAV8 38959050
    450337 8vsk:BBB (1.515) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    450338 8vsk:BBB (1.515) BS02 Y8I N/A GO:0004601 ... Q9NAV8 38959050
    450339 8vsu:B (2.86) BS01 ADP N/A GO:0004672 ... Q7RTN6 38944401
    450340 8vsw:A (-1.00) BS01 HTU N/A N/A N/A 38487244
    450341 8vsy:A (1.6) BS01 WSR N/A N/A N/A N/A
    450342 8vsy:B (1.6) BS01 WSR N/A N/A N/A N/A
    450343 8vt7:A (2.66) BS01 GDP ? GO:0000226 ... Q13509 38609661
    450344 8vt7:B (2.66) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38609661
    450345 8vt7:F (2.66) BS01 GDP ? GO:0000226 ... Q13509 38609661
    450346 8vt7:J (2.66) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38609661
    450347 8vt9:A (2.9) BS01 CMP N/A N/A G0GA88 N/A
    450348 8vt9:A (2.9) BS02 PT5 N/A N/A G0GA88 N/A
    450349 8vt9:A (2.9) BS03 PT5 N/A N/A G0GA88 N/A
    450350 8vt9:B (2.9) BS01 CMP N/A N/A G0GA88 N/A
    450351 8vt9:B (2.9) BS02 PT5 N/A N/A G0GA88 N/A
    450352 8vt9:B (2.9) BS03 PT5 N/A N/A G0GA88 N/A
    450353 8vt9:C (2.9) BS01 CMP N/A N/A G0GA88 N/A
    450354 8vt9:C (2.9) BS02 PT5 N/A N/A G0GA88 N/A
    450355 8vt9:C (2.9) BS03 PT5 N/A N/A G0GA88 N/A
    450356 8vt9:D (2.9) BS01 PT5 N/A N/A G0GA88 N/A
    450357 8vt9:D (2.9) BS02 CMP N/A N/A G0GA88 N/A
    450358 8vt9:D (2.9) BS03 PT5 N/A N/A G0GA88 N/A
    450359 8vta:A (3.0) BS01 CMP N/A N/A G0GA88 N/A
    450360 8vta:A (3.0) BS02 PT5 N/A N/A G0GA88 N/A
    450361 8vta:B (3.0) BS01 CMP N/A N/A G0GA88 N/A
    450362 8vta:B (3.0) BS02 PT5 N/A N/A G0GA88 N/A
    450363 8vta:C (3.0) BS01 CMP N/A N/A G0GA88 N/A
    450364 8vta:C (3.0) BS02 PT5 N/A N/A G0GA88 N/A
    450365 8vta:D (3.0) BS01 CMP N/A N/A G0GA88 N/A
    450366 8vta:D (3.0) BS02 PT5 N/A N/A G0GA88 N/A
    450367 8vtb:A (2.5) BS01 CMP N/A N/A G0GA88 N/A
    450368 8vtb:B (2.5) BS01 CMP N/A N/A G0GA88 N/A
    450369 8vtb:C (2.5) BS01 CMP N/A N/A G0GA88 N/A
    450370 8vtb:D (2.5) BS01 CMP N/A N/A G0GA88 N/A
    450371 8vtj:L (2.81) BS01 BCL ? GO:0009772 ... Q3J1A5 N/A
    450372 8vtj:L (2.81) BS02 BPH ? GO:0009772 ... Q3J1A5 N/A
    450373 8vtj:L (2.81) BS03 BCL ? GO:0009772 ... Q3J1A5 N/A
    450374 8vtj:L (2.81) BS05 BPH ? GO:0009772 ... Q3J1A5 N/A
    450375 8vtj:L (2.81) BS06 BCL ? GO:0009772 ... Q3J1A5 N/A
    450376 8vtj:M (2.81) BS01 BCL ? GO:0009772 ... Q3J1A6 N/A
    450377 8vtj:M (2.81) BS02 BPH ? GO:0009772 ... Q3J1A6 N/A
    450378 8vtj:M (2.81) BS03 BCL ? GO:0009772 ... Q3J1A6 N/A
    450379 8vtj:M (2.81) BS05 BPH ? GO:0009772 ... Q3J1A6 N/A
    450380 8vtj:M (2.81) BS06 SPO ? GO:0009772 ... Q3J1A6 N/A
    450381 8vtj:M (2.81) BS07 BCL ? GO:0009772 ... Q3J1A6 N/A
    450382 8vtk:L (3.07) BS01 BPH ? GO:0009772 ... Q3J1A5 N/A
    450383 8vtk:L (3.07) BS02 BCL ? GO:0009772 ... Q3J1A5 N/A
    450384 8vtk:L (3.07) BS03 BPH ? GO:0009772 ... Q3J1A5 N/A
    450385 8vtk:L (3.07) BS04 BCL ? GO:0009772 ... Q3J1A5 N/A
    450386 8vtk:L (3.07) BS05 BCL ? GO:0009772 ... Q3J1A5 N/A
    450387 8vtk:M (3.07) BS01 BPH ? GO:0009772 ... Q3J1A6 N/A
    450388 8vtk:M (3.07) BS02 BCL ? GO:0009772 ... Q3J1A6 N/A
    450389 8vtk:M (3.07) BS03 BPH ? GO:0009772 ... Q3J1A6 N/A
    450390 8vtk:M (3.07) BS04 BCL ? GO:0009772 ... Q3J1A6 N/A
    450391 8vtk:M (3.07) BS05 SPO ? GO:0009772 ... Q3J1A6 N/A
    450392 8vtk:M (3.07) BS06 BCL ? GO:0009772 ... Q3J1A6 N/A
    450393 8vtl:L (3.05) BS01 BPH ? GO:0009772 ... P0C0Y8 N/A
    450394 8vtl:L (3.05) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    450395 8vtl:L (3.05) BS03 BCL ? GO:0009772 ... P0C0Y8 N/A
    450396 8vtl:L (3.05) BS05 BPH ? GO:0009772 ... P0C0Y8 N/A
    450397 8vtl:L (3.05) BS06 BCL ? GO:0009772 ... P0C0Y8 N/A
    450398 8vtl:M (3.05) BS01 BPH ? GO:0009772 ... P0C0Y9 N/A
    450399 8vtl:M (3.05) BS02 BCL ? GO:0009772 ... P0C0Y9 N/A
    450400 8vtl:M (3.05) BS03 BCL ? GO:0009772 ... P0C0Y9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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