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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    450001 8vhu:B (2.1) BS02 DTP N/A N/A P00452
    P69924    		 39164005
    450002 8vi8:A (3.21) BS01 X5Z N/A N/A C3THM2 39088332
    450003 8vi8:A (3.21) BS02 X5Z N/A N/A C3THM2 39088332
    450004 8vi8:B (3.21) BS01 X5Z N/A N/A C3THM2 39088332
    450005 8vi8:C (3.21) BS01 X5Z N/A N/A C3THM2 39088332
    450006 8vi8:D (3.21) BS01 X5Z N/A N/A C3THM2 39088332
    450007 8vi8:E (3.21) BS01 X5Z N/A N/A C3THM2 39088332
    450008 8vi8:F (3.21) BS01 X5Z N/A N/A C3THM2 39088332
    450009 8vic:A (3.48) BS01 A1AA3 N/A N/A Q9BSA9 N/A
    450010 8vie:A (3.52) BS01 A1AB0 N/A N/A Q9BSA9 N/A
    450011 8vig:A (1.6) BS02 AVJ N/A N/A A0A978T1Y9 39216472
    450012 8vih:A (1.55) BS02 AVJ N/A N/A B1WTS6 39216472
    450013 8vih:B (1.55) BS02 AVJ N/A N/A B1WTS6 39216472
    450014 8vii:A (1.621) BS02 AVJ N/A N/A B1WTS6 39216472
    450015 8vii:A (1.621) BS03 CYS N/A N/A B1WTS6 39216472
    450016 8vii:B (1.621) BS02 AVJ N/A N/A B1WTS6 39216472
    450017 8vii:B (1.621) BS03 CYS N/A N/A B1WTS6 39216472
    450018 8vij:A (1.35) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    450019 8vij:B (1.35) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    450020 8vij:C (1.35) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    450021 8vij:D (1.35) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    450022 8vil:A (1.95) BS02 AVI N/A N/A B1WTS6 39216472
    450023 8viw:A (3.3) BS01 BDP N/A N/A Q5SGE1 N/A
    450024 8viw:A (3.3) BS02 GNS N/A N/A Q5SGE1 N/A
    450025 8viw:A (3.3) BS03 BDP N/A N/A Q5SGE1 N/A
    450026 8viw:A (3.3) BS04 GNS N/A N/A Q5SGE1 N/A
    450027 8viw:A (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    450028 8viw:A (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    450029 8viw:B (3.3) BS01 GNS N/A N/A Q5SGE1 N/A
    450030 8viw:B (3.3) BS02 BDP N/A N/A Q5SGE1 N/A
    450031 8viw:B (3.3) BS03 GNS N/A N/A Q5SGE1 N/A
    450032 8viw:B (3.3) BS04 BDP N/A N/A Q5SGE1 N/A
    450033 8viw:B (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    450034 8viw:B (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    450035 8viw:C (3.3) BS01 BDP N/A N/A Q5SGE1 N/A
    450036 8viw:C (3.3) BS02 GNS N/A N/A Q5SGE1 N/A
    450037 8viw:C (3.3) BS03 BDP N/A N/A Q5SGE1 N/A
    450038 8viw:C (3.3) BS04 GNS N/A N/A Q5SGE1 N/A
    450039 8viw:C (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    450040 8viw:C (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    450041 8viw:D (3.3) BS01 GNS N/A N/A Q5SGE1 N/A
    450042 8viw:D (3.3) BS02 BDP N/A N/A Q5SGE1 N/A
    450043 8viw:D (3.3) BS03 GNS N/A N/A Q5SGE1 N/A
    450044 8viw:D (3.3) BS04 BDP N/A N/A Q5SGE1 N/A
    450045 8viw:D (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    450046 8viw:D (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    450047 8vj3:A (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    450048 8vj3:B (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    450049 8vj3:C (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    450050 8vj3:D (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    450051 8vj6:A (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    450052 8vj6:B (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    450053 8vj6:C (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    450054 8vj6:D (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    450055 8vj7:A (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    450056 8vj7:A (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    450057 8vj7:B (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    450058 8vj7:B (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    450059 8vj7:C (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    450060 8vj7:C (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    450061 8vj7:D (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    450062 8vj7:D (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    450063 8vjk:A (2.92) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    450064 8vjk:A (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    450065 8vjk:A (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    450066 8vjk:B (2.92) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    450067 8vjk:B (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    450068 8vjk:B (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    450069 8vjk:C (2.92) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    450070 8vjk:C (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    450071 8vjk:C (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    450072 8vjk:D (2.92) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    450073 8vjk:D (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    450074 8vjk:D (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    450075 8vjn:A (2.31) BS01 FMN ? N/A Q1D9P3 38748579
    450076 8vjn:B (2.31) BS01 FMN ? N/A Q1D9P3 38748579
    450077 8vjn:C (2.31) BS01 FMN ? N/A Q1D9P3 38748579
    450078 8vjn:D (2.31) BS01 FMN ? N/A Q1D9P3 38748579
    450079 8vk4:A (3.56) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    450080 8vk4:A (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    450081 8vk4:A (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    450082 8vk4:B (3.56) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    450083 8vk4:B (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    450084 8vk4:B (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    450085 8vk4:C (3.56) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    450086 8vk4:C (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    450087 8vk4:C (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    450088 8vk4:D (3.56) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    450089 8vk4:D (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    450090 8vk4:D (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    450091 8vka:A (1.97) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    450092 8vka:A (1.97) BS02 A1AB7 N/A GO:0004379 ... A5K1A2 38680035
    450093 8vka:B (1.97) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    450094 8vka:B (1.97) BS02 A1AB7 N/A GO:0004379 ... A5K1A2 38680035
    450095 8vka:C (1.97) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    450096 8vka:C (1.97) BS02 A1AB7 N/A GO:0004379 ... A5K1A2 38680035
    450097 8vkb:A (2.43) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    450098 8vkb:A (2.43) BS02 A1AB8 N/A GO:0004379 ... A5K1A2 38680035
    450099 8vkb:B (2.43) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    450100 8vkb:B (2.43) BS02 A1AB8 N/A GO:0004379 ... A5K1A2 38680035
    450101 8vkb:C (2.43) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    450102 8vkb:C (2.43) BS02 A1AB8 N/A GO:0004379 ... A5K1A2 38680035
    450103 8vkc:AAA (2.03) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    450104 8vkc:AAA (2.03) BS02 NPO N/A GO:0004601 ... Q9NAV8 38959050
    450105 8vkc:BBB (2.03) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    450106 8vkc:BBB (2.03) BS02 NPO N/A GO:0004601 ... Q9NAV8 38959050
    450107 8vkd:AAA (1.4) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    450108 8vkd:AAA (1.4) BS02 4NC N/A GO:0004601 ... Q9NAV8 38959050
    450109 8vkd:BBB (1.4) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    450110 8vkd:BBB (1.4) BS02 4NC N/A GO:0004601 ... Q9NAV8 38959050
    450111 8vkf:A (1.7) BS01 HEM ? GO:0004497 ... Q2IU02 N/A
    450112 8vkf:A (1.7) BS02 LVK ? GO:0004497 ... Q2IU02 N/A
    450113 8vkj:A (2.92) BS01 ACO N/A GO:0005764 ... Q68CP4 N/A
    450114 8vkj:B (2.92) BS01 ACO N/A GO:0005764 ... Q68CP4 N/A
    450115 8vku:A (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    450116 8vku:B (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    450117 8vku:C (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    450118 8vku:D (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    450119 8vku:E (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    450120 8vku:F (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    450121 8vkz:A (2.133) BS02 A1ACE ? N/A P04150 38516584
    450122 8vkz:B (2.133) BS02 A1ACE ? N/A P04150 38516584
    450123 8vl0:A (1.837) BS01 LVC ? GO:0004497 ... Q2IU02 N/A
    450124 8vl0:A (1.837) BS02 HEM ? GO:0004497 ... Q2IU02 N/A
    450125 8vl7:A (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    450126 8vl7:B (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    450127 8vl7:C (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    450128 8vl7:D (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    450129 8vl7:E (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    450130 8vl7:F (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    450131 8vl7:G (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    450132 8vl7:H (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    450133 8vl8:A (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    450134 8vl8:B (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    450135 8vl8:C (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    450136 8vl8:D (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    450137 8vl8:E (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    450138 8vl9:A (2.5) BS01 A1ACI ? N/A P40337 N/A
    450139 8vl9:D (2.5) BS01 A1ACI 1.13.11.20 GO:0000097 ... Q16878 N/A
    450140 8vlb:A (2.9) BS01 3JF ? N/A P40337 N/A
    450141 8vlb:D (2.9) BS01 3JF 1.13.11.20 GO:0000097 ... Q16878 N/A
    450142 8vlg:A (3.15) BS01 ACO N/A GO:0005764 ... Q68CP4 N/A
    450143 8vlg:A (3.15) BS02 A1ACY N/A GO:0005764 ... Q68CP4 N/A
    450144 8vlg:B (3.15) BS01 ACO N/A GO:0005764 ... Q68CP4 N/A
    450145 8vlg:B (3.15) BS02 A1ACY N/A GO:0005764 ... Q68CP4 N/A
    450146 8vli:A (3.2) BS01 COA N/A GO:0005764 ... Q68CP4 N/A
    450147 8vli:A (3.2) BS02 A1AC0 N/A GO:0005764 ... Q68CP4 N/A
    450148 8vli:B (3.2) BS01 COA N/A GO:0005764 ... Q68CP4 N/A
    450149 8vli:B (3.2) BS02 A1AC0 N/A GO:0005764 ... Q68CP4 N/A
    450150 8vlq:A (2.07) BS01 ZKE 1.1.1.88 GO:0004420 ... P13702 38327055
    450151 8vlq:A (2.07) BS02 COA 1.1.1.88 GO:0004420 ... P13702 38327055
    450152 8vlq:A (2.07) BS03 A1AFY 1.1.1.88 GO:0004420 ... P13702 38327055
    450153 8vlq:A (2.07) BS04 NAD 1.1.1.88 GO:0004420 ... P13702 38327055
    450154 8vlq:A (2.07) BS05 NAI 1.1.1.88 GO:0004420 ... P13702 38327055
    450155 8vlq:B (2.07) BS01 COA 1.1.1.88 GO:0004420 ... P13702 38327055
    450156 8vlq:B (2.07) BS02 NAD 1.1.1.88 GO:0004420 ... P13702 38327055
    450157 8vlq:B (2.07) BS03 NAI 1.1.1.88 GO:0004420 ... P13702 38327055
    450158 8vlq:B (2.07) BS04 MEV 1.1.1.88 GO:0004420 ... P13702 38327055
    450159 8vls:A (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    450160 8vls:B (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    450161 8vls:C (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    450162 8vls:D (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    450163 8vls:E (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    450164 8vls:F (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    450165 8vls:G (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    450166 8vls:H (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    450167 8vls:I (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    450168 8vls:J (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    450169 8vls:K (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    450170 8vls:L (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    450171 8vlu:A (3.12) BS01 COA N/A GO:0005764 ... Q68CP4 N/A
    450172 8vlu:B (3.12) BS01 COA N/A GO:0005764 ... Q68CP4 N/A
    450173 8vlx:A (2.6) BS01 A1ACS ? GO:0000132 ... P42858 N/A
    450174 8vlx:B (2.6) BS01 A1ACS ? GO:0003674 ... P23610 N/A
    450175 8vm2:A (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    450176 8vm2:A (1.74) BS03 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    450177 8vm2:A (1.74) BS04 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    450178 8vm2:B (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    450179 8vm2:B (1.74) BS02 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    450180 8vm2:B (1.74) BS04 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    450181 8vm2:C (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    450182 8vme:A (2.3) BS03 ADP N/A N/A Q9WV60 39226374
    450183 8vmf:A (2.5) BS04 AF3 N/A N/A Q9WV60 39226374
    450184 8vmf:A (2.5) BS05 ADP N/A N/A Q9WV60 39226374
    450185 8vmg:A (2.45) BS01 ADP N/A N/A Q9WV60 39226374
    450186 8vof:A (3.0) BS01 A1ADE N/A N/A Q9UBF8 N/A
    450187 8vof:B (3.0) BS01 GDP N/A N/A P62491 N/A
    450188 8vov:A (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    450189 8vov:A (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    450190 8vov:B (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    450191 8vov:B (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    450192 8vov:C (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    450193 8vov:C (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    450194 8vov:D (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    450195 8vov:D (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    450196 8vov:E (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    450197 8vov:E (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    450198 8vov:F (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    450199 8vov:F (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    450200 8vph:A (3.18) BS04 Q8Y N/A N/A A0A031WG99 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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