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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    449601 8v8m:C (1.82) BS03 COA 2.3.1.74 GO:0009813 ... A0A8T0PQ54 38891840
    449602 8v8p:A (3.18) BS01 DFV 5.5.1.6 GO:0009813 ... C5WV22 38891840
    449603 8v8p:A (3.18) BS02 DFV 5.5.1.6 GO:0009813 ... C5WV22 38891840
    449604 8v8p:B (3.18) BS01 DFV 5.5.1.6 GO:0009813 ... C5WV22 38891840
    449605 8v8p:B (3.18) BS02 DFV 5.5.1.6 GO:0009813 ... C5WV22 38891840
    449606 8v8p:C (3.18) BS01 DFV 5.5.1.6 GO:0009813 ... C5WV22 38891840
    449607 8v8p:D (3.18) BS01 DFV 5.5.1.6 GO:0009813 ... C5WV22 38891840
    449608 8v8u:A (2.93) BS01 1LT 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    449609 8v8u:A (2.93) BS02 YQB 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    449610 8v8u:C (2.93) BS01 1LT 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    449611 8v8u:C (2.93) BS02 YQB 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    449612 8v8v:A (2.61) BS01 YQ2 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    449613 8v8v:A (2.61) BS02 1LT 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    449614 8v8v:C (2.61) BS01 YQ2 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    449615 8v8v:C (2.61) BS02 1LT 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38477582
    449616 8v8z:A (2.01) BS01 A1AAK 3.4.21.- N/A P08519 38720069
    449617 8v8z:B (2.01) BS01 A1AAK 3.4.21.- N/A P08519 38720069
    449618 8v8z:C (2.01) BS01 A1AAK 3.4.21.- N/A P08519 38720069
    449619 8v9b:A (1.19) BS01 A1AAM 3.4.21.- N/A P08519 38720069
    449620 8v9b:B (1.19) BS01 A1AAM 3.4.21.- N/A P08519 38720069
    449621 8v9g:A (1.62) BS01 MER 3.5.2.6 GO:0008800 ... Q09HD0 38511828
    449622 8v9g:B (1.62) BS01 MER 3.5.2.6 GO:0008800 ... Q09HD0 38511828
    449623 8v9h:A (1.5) BS01 Y33 3.5.2.6 GO:0008800 ... Q09HD0 38511828
    449624 8v9h:B (1.5) BS01 Y33 3.5.2.6 GO:0008800 ... Q09HD0 38511828
    449625 8v9i:A (1.981) BS01 A1AAN 2.2.1.7 GO:0000287 ... Q9RUB5 38513073
    449626 8v9i:A (1.981) BS03 BGQ 2.2.1.7 GO:0000287 ... Q9RUB5 38513073
    449627 8v9i:B (1.981) BS01 A1AAN 2.2.1.7 GO:0000287 ... Q9RUB5 38513073
    449628 8v9l:x (3.0) BS02 GDP ? GO:0003746 ... A0QS98 38355796
    449629 8v9m:A (1.61) BS01 YR5 2.6.1.13 GO:0004587 ... P04181 38630468
    449630 8v9m:B (1.61) BS01 YR5 2.6.1.13 GO:0004587 ... P04181 38630468
    449631 8v9m:C (1.61) BS01 YR5 2.6.1.13 GO:0004587 ... P04181 38630468
    449632 8v9p:A (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 N/A
    449633 8v9p:B (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 N/A
    449634 8v9p:C (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 N/A
    449635 8v9p:D (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 N/A
    449636 8v9q:A (2.29) BS03 UDP 2.4.1.41 GO:0004653 ... O08912 38416819
    449637 8v9q:B (2.29) BS02 UDP 2.4.1.41 GO:0004653 ... O08912 38416819
    449638 8v9w:A (1.68) BS01 7V7 N/A N/A N/A 38945452
    449639 8v9w:B (1.68) BS01 7V7 N/A N/A N/A 38945452
    449640 8v9w:C (1.68) BS01 7V7 N/A N/A N/A 38945452
    449641 8v9w:D (1.68) BS01 7V7 N/A N/A N/A 38945452
    449642 8v9x:A (1.55) BS01 7V7 N/A N/A N/A 38945452
    449643 8v9z:A (1.6) BS01 7V7 N/A N/A N/A 38945452
    449644 8va0:A (1.85) BS01 7V7 N/A N/A N/A 38945452
    449645 8va0:B (1.85) BS01 7V7 N/A N/A N/A 38945452
    449646 8va1:A (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    449647 8va1:B (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    449648 8va1:C (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    449649 8va1:D (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    449650 8va2:a (4.5) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    449651 8va2:b (4.5) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    449652 8va2:g (4.5) BS01 GDP ? GO:0000070 ... P23258 N/A
    449653 8va2:h (4.5) BS01 GDP ? GO:0000070 ... P23258 N/A
    449654 8vac:A (3.4) BS01 9TP N/A GO:0003677 ... P02768 38852682
    449655 8vae:A (3.7) BS01 SAL N/A GO:0003677 ... P02768 38852682
    449656 8vae:A (3.7) BS02 SAL N/A GO:0003677 ... P02768 38852682
    449657 8vae:A (3.7) BS03 SAL N/A GO:0003677 ... P02768 38852682
    449658 8val:B (3.7) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449659 8val:C (3.7) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449660 8val:C (3.7) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449661 8val:D (3.7) BS02 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449662 8val:D (3.7) BS04 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449663 8vam:B (3.9) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449664 8vam:B (3.9) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449665 8vam:C (3.9) BS01 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449666 8vam:C (3.9) BS02 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449667 8vam:D (3.9) BS01 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449668 8vam:D (3.9) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449669 8vam:D (3.9) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449670 8vap:B (3.0) BS01 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449671 8vap:B (3.0) BS02 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449672 8vap:C (3.0) BS01 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449673 8vap:C (3.0) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449674 8vap:D (3.0) BS01 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449675 8vap:D (3.0) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449676 8vap:D (3.0) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449677 8vaq:B (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449678 8vaq:B (3.8) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449679 8vaq:C (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449680 8vaq:C (3.8) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449681 8vaq:D (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449682 8vaq:D (3.8) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449683 8var:B (3.9) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449684 8var:B (3.9) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449685 8var:C (3.9) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449686 8var:C (3.9) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449687 8var:D (3.9) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449688 8var:D (3.9) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449689 8vas:B (3.8) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449690 8vas:B (3.8) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449691 8vas:C (3.8) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449692 8vas:C (3.8) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449693 8vas:D (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449694 8vas:D (3.8) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449695 8vat:B (3.2) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449696 8vat:B (3.2) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449697 8vat:C (3.2) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449698 8vat:C (3.2) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449699 8vat:D (3.2) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    449700 8vat:D (3.2) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    449701 8vb1:A (1.3) BS01 A1AAD ? GO:0004190 ... G0X8E8 38380945
    449702 8vb1:B (1.3) BS01 A1AAD ? GO:0004190 ... G0X8E8 38380945
    449703 8vba:A (3.29) BS01 BGC N/A N/A Q29XT7 N/A
    449704 8vba:A (3.29) BS02 BGC N/A N/A Q29XT7 N/A
    449705 8vba:A (3.29) BS03 BGC N/A N/A Q29XT7 N/A
    449706 8vba:A (3.29) BS04 BGC N/A N/A Q29XT7 N/A
    449707 8vba:A (3.29) BS05 BGC N/A N/A Q29XT7 N/A
    449708 8vba:A (3.29) BS06 BGC N/A N/A Q29XT7 N/A
    449709 8vba:A (3.29) BS07 BGC N/A N/A Q29XT7 N/A
    449710 8vba:A (3.29) BS08 BGC N/A N/A Q29XT7 N/A
    449711 8vba:A (3.29) BS09 BGC N/A N/A Q29XT7 N/A
    449712 8vba:A (3.29) BS10 BGC N/A N/A Q29XT7 N/A
    449713 8vba:A (3.29) BS11 BGC N/A N/A Q29XT7 N/A
    449714 8vba:A (3.29) BS12 BGC N/A N/A Q29XT7 N/A
    449715 8vba:A (3.29) BS13 BGC N/A N/A Q29XT7 N/A
    449716 8vba:A (3.29) BS14 BGC N/A N/A Q29XT7 N/A
    449717 8vba:A (3.29) BS15 BGC N/A N/A Q29XT7 N/A
    449718 8vba:A (3.29) BS16 BGC N/A N/A Q29XT7 N/A
    449719 8vba:A (3.29) BS17 BGC N/A N/A Q29XT7 N/A
    449720 8vba:A (3.29) BS18 BGC N/A N/A Q29XT7 N/A
    449721 8vba:A (3.29) BS19 BGC N/A N/A Q29XT7 N/A
    449722 8vba:A (3.29) BS20 BGC N/A N/A Q29XT7 N/A
    449723 8vba:A (3.29) BS21 BGC N/A N/A Q29XT7 N/A
    449724 8vba:A (3.29) BS22 BGC N/A N/A Q29XT7 N/A
    449725 8vba:A (3.29) BS23 BGC N/A N/A Q29XT7 N/A
    449726 8vba:A (3.29) BS24 BGC N/A N/A Q29XT7 N/A
    449727 8vba:A (3.29) BS25 BGC N/A N/A Q29XT7 N/A
    449728 8vba:A (3.29) BS26 BGC N/A N/A Q29XT7 N/A
    449729 8vba:A (3.29) BS27 BGC N/A N/A Q29XT7 N/A
    449730 8vba:H (3.29) BS01 BGC N/A N/A N/A N/A
    449731 8vbb:A (3.97) BS01 BGC N/A N/A Q29XT7 N/A
    449732 8vbb:A (3.97) BS02 BGC N/A N/A Q29XT7 N/A
    449733 8vbb:A (3.97) BS03 BGC N/A N/A Q29XT7 N/A
    449734 8vbb:A (3.97) BS04 BGC N/A N/A Q29XT7 N/A
    449735 8vbb:A (3.97) BS05 BGC N/A N/A Q29XT7 N/A
    449736 8vbb:A (3.97) BS06 BGC N/A N/A Q29XT7 N/A
    449737 8vbb:A (3.97) BS07 BGC N/A N/A Q29XT7 N/A
    449738 8vbb:A (3.97) BS08 BGC N/A N/A Q29XT7 N/A
    449739 8vbb:A (3.97) BS09 BGC N/A N/A Q29XT7 N/A
    449740 8vbb:A (3.97) BS10 BGC N/A N/A Q29XT7 N/A
    449741 8vbb:A (3.97) BS11 BGC N/A N/A Q29XT7 N/A
    449742 8vbb:A (3.97) BS12 BGC N/A N/A Q29XT7 N/A
    449743 8vbb:A (3.97) BS13 BGC N/A N/A Q29XT7 N/A
    449744 8vbb:A (3.97) BS14 BGC N/A N/A Q29XT7 N/A
    449745 8vbb:A (3.97) BS15 BGC N/A N/A Q29XT7 N/A
    449746 8vbb:A (3.97) BS16 BGC N/A N/A Q29XT7 N/A
    449747 8vbb:A (3.97) BS17 BGC N/A N/A Q29XT7 N/A
    449748 8vbb:A (3.97) BS18 BGC N/A N/A Q29XT7 N/A
    449749 8vbb:A (3.97) BS19 BGC N/A N/A Q29XT7 N/A
    449750 8vbb:A (3.97) BS20 BGC N/A N/A Q29XT7 N/A
    449751 8vbb:A (3.97) BS21 BGC N/A N/A Q29XT7 N/A
    449752 8vbb:A (3.97) BS22 BGC N/A N/A Q29XT7 N/A
    449753 8vbb:A (3.97) BS23 BGC N/A N/A Q29XT7 N/A
    449754 8vbb:A (3.97) BS24 BGC N/A N/A Q29XT7 N/A
    449755 8vbb:A (3.97) BS25 BGC N/A N/A Q29XT7 N/A
    449756 8vbb:A (3.97) BS26 BGC N/A N/A Q29XT7 N/A
    449757 8vbb:A (3.97) BS27 BGC N/A N/A Q29XT7 N/A
    449758 8vbb:A (3.97) BS28 BGC N/A N/A Q29XT7 N/A
    449759 8vbb:A (3.97) BS29 BGC N/A N/A Q29XT7 N/A
    449760 8vbb:A (3.97) BS30 BGC N/A N/A Q29XT7 N/A
    449761 8vbb:A (3.97) BS31 BGC N/A N/A Q29XT7 N/A
    449762 8vbb:A (3.97) BS32 BGC N/A N/A Q29XT7 N/A
    449763 8vbb:H (3.97) BS01 BGC N/A N/A N/A N/A
    449764 8vbu:A (2.0) BS01 1S6 ? GO:0008658 ... Q2FZ94 38527711
    449765 8vbu:B (2.0) BS01 1S6 ? GO:0008658 ... Q2FZ94 38527711
    449766 8vbv:A (2.4) BS01 63U ? GO:0008658 ... Q2FZ94 38527711
    449767 8vbv:B (2.4) BS01 63U ? GO:0008658 ... Q2FZ94 38527711
    449768 8vbw:A (2.3) BS01 1RG ? GO:0008658 ... Q2FZ94 38527711
    449769 8vbw:B (2.3) BS01 1RG ? GO:0008658 ... Q2FZ94 38527711
    449770 8vby:A (3.19) BS01 42L N/A N/A Q01959 39112705
    449771 8vby:A (3.19) BS02 A1AAF N/A N/A Q01959 39112705
    449772 8vby:A (3.19) BS03 Y01 N/A N/A Q01959 39112705
    449773 8vby:A (3.19) BS04 Y01 N/A N/A Q01959 39112705
    449774 8vby:A (3.19) BS06 Y01 N/A N/A Q01959 39112705
    449775 8vc1:A (2.85) BS01 9Z9 ? GO:0001582 ... B3GTD7 38187590
    449776 8vc1:B (2.85) BS01 9Z9 ? GO:0001582 ... B3GTD7 38187590
    449777 8vc1:C (2.85) BS01 9Z9 ? GO:0001582 ... B3GTD7 38187590
    449778 8vc1:D (2.85) BS01 9Z9 ? GO:0001582 ... B3GTD7 38187590
    449779 8vc8:A (1.8) BS01 HEM N/A N/A N/A 38452047
    449780 8vcd:A (2.32) BS01 VTY N/A N/A Q9FG13 39090154
    449781 8vcj:A (3.32) BS01 ADP N/A GO:0003677 ... P05846 38834067
    449782 8vcj:B (3.32) BS02 ADP N/A GO:0003677 ... P05846 38834067
    449783 8vcj:B (3.32) BS03 AGS N/A GO:0003677 ... P05846 38834067
    449784 8vcj:C (3.32) BS02 AGS N/A GO:0003677 ... P05846 38834067
    449785 8vcj:D (3.32) BS01 ADP N/A GO:0003677 ... P05846 38834067
    449786 8vcj:E (3.32) BS01 ADP N/A GO:0003677 ... P05846 38834067
    449787 8vcj:F (3.32) BS02 ADP N/A GO:0003677 ... P05846 38834067
    449788 8vcj:G (3.32) BS01 AGS N/A GO:0003677 ... P05846 38834067
    449789 8vcn:A (1.47) BS01 FMN ? GO:0000166 ... A1E8I9 38442365
    449790 8vct:A (3.83) BS01 ADP N/A GO:0003677 ... P05846 38834067
    449791 8vct:B (3.83) BS02 AGS N/A GO:0003677 ... P05846 38834067
    449792 8vct:B (3.83) BS03 ADP N/A GO:0003677 ... P05846 38834067
    449793 8vct:C (3.83) BS02 AGS N/A GO:0003677 ... P05846 38834067
    449794 8vct:E (3.83) BS01 ADP N/A GO:0003677 ... P05846 38834067
    449795 8vct:F (3.83) BS01 ADP N/A GO:0003677 ... P05846 38834067
    449796 8vct:G (3.83) BS01 AGS N/A GO:0003677 ... P05846 38834067
    449797 8vcv:A (2.8) BS01 FUC N/A N/A P08669 39243373
    449798 8vcv:A (2.8) BS02 MAN N/A N/A P08669 39243373
    449799 8vcv:B (2.8) BS01 MAN N/A N/A P08669 39243373
    449800 8vcv:C (2.8) BS01 MAN N/A N/A P08669 39243373
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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