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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    449201 8v1l:C (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13    		 N/A Q13283 38284934
    449202 8v1l:D (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13    		 N/A Q13283 38284934
    449203 8v1l:E (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13    		 N/A Q13283 38284934
    449204 8v1l:F (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13    		 N/A Q13283 38284934
    449205 8v1o:A (2.92) BS01 Y9T N/A N/A Q9NWZ3 38920289
    449206 8v1o:B (2.92) BS01 Y9T N/A N/A Q9NWZ3 38920289
    449207 8v1o:C (2.92) BS01 Y9T N/A N/A Q9NWZ3 38920289
    449208 8v1o:D (2.92) BS01 Y9T N/A N/A Q9NWZ3 38920289
    449209 8v1p:A (2.21) BS01 98C ? N/A Q8IVV7 N/A
    449210 8v1r:A (2.9) BS07 TTP N/A N/A H9E937 39197451
    449211 8v1t:A (2.8) BS07 AVP N/A N/A H9E937 39197451
    449212 8v24:B (3.6) BS01 24G 3.5.1.108 GO:0006796 ... P0A726 38635633
    449213 8v24:D (3.6) BS01 24G 3.5.1.108 GO:0006796 ... P0A726 38635633
    449214 8v2f:A (2.09) BS01 YJU N/A N/A Q9NWZ3 38920289
    449215 8v2f:B (2.09) BS01 YJU N/A N/A Q9NWZ3 38920289
    449216 8v2f:C (2.09) BS01 YJU N/A N/A Q9NWZ3 38920289
    449217 8v2f:D (2.09) BS01 YJU N/A N/A Q9NWZ3 38920289
    449218 8v2i:A () BS01 GTP N/A N/A N/A N/A
    449219 8v2i:B () BS01 G2P N/A N/A N/A N/A
    449220 8v2i:I () BS01 GTP N/A N/A N/A N/A
    449221 8v2i:Q () BS01 G2P N/A N/A N/A N/A
    449222 8v2k:A (1.81) BS01 F0G 4.1.99.1 GO:0006520 ... P28796 N/A
    449223 8v2k:B (1.81) BS01 PLI 4.1.99.1 GO:0006520 ... P28796 N/A
    449224 8v2k:C (1.81) BS01 PLI 4.1.99.1 GO:0006520 ... P28796 N/A
    449225 8v2k:D (1.81) BS01 F0G 4.1.99.1 GO:0006520 ... P28796 N/A
    449226 8v2l:A (2.43) BS01 YK0 N/A N/A Q9NWZ3 38920289
    449227 8v2l:B (2.43) BS01 YK0 N/A N/A Q9NWZ3 38920289
    449228 8v2l:C (2.43) BS01 YK0 N/A N/A Q9NWZ3 38920289
    449229 8v2l:D (2.43) BS01 YK0 N/A N/A Q9NWZ3 38920289
    449230 8v2n:A (1.74) BS02 CNA 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    449231 8v2o:A (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    449232 8v2o:B (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    449233 8v2o:C (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    449234 8v2o:D (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    449235 8v2o:E (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    449236 8v2t:A (1.402) BS01 XLR 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    449237 8v2y:A (2.86) BS01 FMN ? GO:0000166 ... Q6N7Y7 38417793
    449238 8v2y:B (2.86) BS01 FMN ? GO:0000166 ... Q6N7Y7 38417793
    449239 8v2z:A (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    449240 8v2z:B (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    449241 8v2z:C (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    449242 8v2z:D (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    449243 8v2z:E (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    449244 8v30:A (2.54) BS02 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    449245 8v30:B (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    449246 8v30:C (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    449247 8v30:D (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    449248 8v30:E (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    449249 8v36:A (2.235) BS02 NAI N/A N/A Q46N53 39263660
    449250 8v36:B (2.235) BS01 NAI N/A N/A Q46N53 39263660
    449251 8v37:A (2.228) BS01 NAD N/A N/A Q46N53 39263660
    449252 8v3d:D (2.95) BS01 A1AFC N/A GO:0004984 ... A0A1S4GFY3 38870275
    449253 8v3k:A (1.47) BS02 DPO 4.2.3.37 GO:0016829 ... Q9K499 38420671
    449254 8v3k:A (1.47) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 38420671
    449255 8v3n:A (2.3) BS02 A1AAG N/A N/A Q8NDL9 39020174
    449256 8v3q:A (3.1) BS03 GLU N/A N/A Q8NDL9 39020174
    449257 8v3r:A (3.4) BS03 GLU N/A N/A Q8NDL9 39020174
    449258 8v3s:A (3.6) BS03 GLU N/A N/A Q8NDL9 39020174
    449259 8v42:B (2.3) BS01 YD9 N/A N/A Q99986 38780468
    449260 8v42:D (2.3) BS01 YD9 N/A N/A Q99986 38780468
    449261 8v45:A (3.63) BS01 ATP N/A N/A N/A 39112702
    449262 8v45:A (3.63) BS02 ATP N/A N/A N/A 39112702
    449263 8v45:B (3.63) BS01 ATP N/A N/A N/A 39112702
    449264 8v45:B (3.63) BS02 ATP N/A N/A N/A 39112702
    449265 8v45:C (3.63) BS01 ATP N/A N/A N/A 39112702
    449266 8v45:C (3.63) BS02 ATP N/A N/A N/A 39112702
    449267 8v45:F (3.63) BS01 ATP N/A N/A N/A 39112702
    449268 8v45:F (3.63) BS02 ATP N/A N/A N/A 39112702
    449269 8v46:A (3.09) BS01 ATP N/A N/A N/A 39112702
    449270 8v46:B (3.09) BS01 ATP N/A N/A N/A 39112702
    449271 8v46:B (3.09) BS02 ATP N/A N/A N/A 39112702
    449272 8v47:A (4.08) BS01 ATP N/A N/A N/A 39112702
    449273 8v47:B (4.08) BS01 ATP N/A N/A N/A 39112702
    449274 8v47:B (4.08) BS02 ATP N/A N/A N/A 39112702
    449275 8v47:C (4.08) BS01 ATP N/A N/A N/A 39112702
    449276 8v47:H (4.08) BS01 ATP N/A N/A N/A 39112702
    449277 8v47:H (4.08) BS02 ATP N/A N/A N/A 39112702
    449278 8v48:A (3.68) BS01 ATP N/A N/A N/A 39112702
    449279 8v48:B (3.68) BS01 ATP N/A N/A N/A 39112702
    449280 8v48:B (3.68) BS02 ATP N/A N/A N/A 39112702
    449281 8v48:C (3.68) BS01 ATP N/A N/A N/A 39112702
    449282 8v48:C (3.68) BS02 ATP N/A N/A N/A 39112702
    449283 8v48:F (3.68) BS01 ATP N/A N/A N/A 39112702
    449284 8v48:F (3.68) BS02 ATP N/A N/A N/A 39112702
    449285 8v48:H (3.68) BS01 ATP N/A N/A N/A 39112702
    449286 8v48:K (3.68) BS01 ATP N/A N/A N/A 39112702
    449287 8v49:A (3.62) BS01 ATP N/A N/A N/A 39112702
    449288 8v49:B (3.62) BS01 ATP N/A N/A N/A 39112702
    449289 8v4a:A (1.96) BS01 YAE 4.1.99.1 GO:0006520 ... P28796 N/A
    449290 8v4a:B (1.96) BS01 YAR 4.1.99.1 GO:0006520 ... P28796 N/A
    449291 8v4a:C (1.96) BS01 YAE 4.1.99.1 GO:0006520 ... P28796 N/A
    449292 8v4a:D (1.96) BS01 YAR 4.1.99.1 GO:0006520 ... P28796 N/A
    449293 8v4g:A (2.0) BS01 NAP ? GO:0000166 ... A0A0U3AP28 38386885
    449294 8v4g:A (2.0) BS02 CDP ? GO:0000166 ... A0A0U3AP28 38386885
    449295 8v4g:B (2.0) BS01 NAP ? GO:0000166 ... A0A0U3AP28 38386885
    449296 8v4g:B (2.0) BS02 CDP ? GO:0000166 ... A0A0U3AP28 38386885
    449297 8v4h:A (2.2) BS01 YCX ? GO:0000166 ... A0A0U3AP28 38386885
    449298 8v4h:B (2.2) BS01 YCX ? GO:0000166 ... A0A0U3AP28 38386885
    449299 8v4h:B (2.2) BS02 PO4 ? GO:0000166 ... A0A0U3AP28 38386885
    449300 8v4j:A (1.31) BS01 J7D 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    449301 8v4k:A (3.1) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    449302 8v4k:B (3.1) BS01 G2P N/A GO:0000226 ... P02554 39020174
    449303 8v4k:C (3.1) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    449304 8v4k:D (3.1) BS01 G2P N/A GO:0000226 ... P02554 39020174
    449305 8v4k:E (3.1) BS02 GLU N/A N/A Q8NDL9 39020174
    449306 8v4l:A (2.9) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    449307 8v4l:B (2.9) BS01 G2P N/A GO:0000226 ... P02554 39020174
    449308 8v4l:C (2.9) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    449309 8v4l:D (2.9) BS01 G2P N/A GO:0000226 ... P02554 39020174
    449310 8v4l:E (2.9) BS01 GLU N/A N/A Q8NDL9 39020174
    449311 8v4m:A (3.0) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    449312 8v4m:B (3.0) BS01 G2P N/A GO:0000226 ... P02554 39020174
    449313 8v4m:C (3.0) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    449314 8v4m:D (3.0) BS01 G2P N/A GO:0000226 ... P02554 39020174
    449315 8v4m:E (3.0) BS01 GLU N/A N/A Q8NDL9 39020174
    449316 8v4o:A (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    449317 8v4o:B (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    449318 8v4o:C (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    449319 8v4p:A (2.3) BS01 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    449320 8v4p:A (2.3) BS02 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    449321 8v4p:B (2.3) BS01 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    449322 8v4p:C (2.3) BS01 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    449323 8v4p:C (2.3) BS02 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    449324 8v4r:A (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    449325 8v4r:A (2.7) BS02 COA 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    449326 8v4r:B (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    449327 8v4r:B (2.7) BS02 COA 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    449328 8v4r:C (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    449329 8v4r:C (2.7) BS02 COA 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    449330 8v4s:A (2.49) BS01 GDP N/A N/A Q64663 39107314
    449331 8v4s:B (2.49) BS01 GDP N/A N/A Q64663 39107314
    449332 8v4s:C (2.49) BS01 GDP N/A N/A Q64663 39107314
    449333 8v4u:A (1.819) BS01 YDL 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38687966
    449334 8v4u:B (1.819) BS01 YDL 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38687966
    449335 8v4x:A (2.486) BS04 A1AAB 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    449336 8v4x:B (2.486) BS02 A1AAB 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    449337 8v4x:C (2.486) BS02 A1AAB 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    449338 8v4x:D (2.486) BS02 A1AAB 3.4.22.- GO:0004197 ... Q9UDY8 38507740
    449339 8v4y:W (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    449340 8v4y:W (2.8) BS04 BEF 3.6.4.- GO:0000183 ... O60264 38472177
    449341 8v5c:B (1.96) BS01 DXC N/A N/A P18013 39079629
    449342 8v5c:B (1.96) BS02 DXC N/A N/A P18013 39079629
    449343 8v5e:A (2.2) BS01 DXC N/A N/A P18013 39079629
    449344 8v5g:A (2.5) BS01 YDO 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    449345 8v5g:B (2.5) BS01 YDO 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    449346 8v5r:A (3.0) BS04 D3T N/A GO:0000262 ... P54098 38932681
    449347 8v6g:A (11.16) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    449348 8v6g:C (11.16) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    449349 8v6h:A (11.11) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    449350 8v6h:C (11.11) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    449351 8v6i:A (14.06) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    449352 8v6i:C (14.06) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    449353 8v6j:A (11.11) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    449354 8v6j:C (11.11) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    449355 8v6l:A (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    449356 8v6l:B (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    449357 8v6l:C (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    449358 8v6l:D (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    449359 8v6m:A (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    449360 8v6m:B (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    449361 8v6m:C (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    449362 8v6m:D (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    449363 8v6n:A (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    449364 8v6n:A (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    449365 8v6n:A (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    449366 8v6n:B (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    449367 8v6n:B (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    449368 8v6n:B (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    449369 8v6n:C (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    449370 8v6n:C (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    449371 8v6n:C (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    449372 8v6n:D (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    449373 8v6n:D (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    449374 8v6n:D (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    449375 8v6o:A (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    449376 8v6o:A (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    449377 8v6o:B (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    449378 8v6o:B (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    449379 8v6o:C (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    449380 8v6o:C (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    449381 8v6o:D (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    449382 8v6o:D (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    449383 8v6p:A (1.74) BS01 A1ACN 4.1.99.1 GO:0006520 ... P28796 N/A
    449384 8v6p:B (1.74) BS01 A1ABZ 4.1.99.1 GO:0006520 ... P28796 N/A
    449385 8v6p:C (1.74) BS01 A1ACN 4.1.99.1 GO:0006520 ... P28796 N/A
    449386 8v6p:D (1.74) BS01 A1ABZ 4.1.99.1 GO:0006520 ... P28796 N/A
    449387 8v6r:A (2.14) BS01 AR6 ? N/A A0A178STJ6 38924412
    449388 8v6r:B (2.14) BS01 AR6 ? N/A A0A178STJ6 38924412
    449389 8v6s:A (1.6) BS01 YG8 ? N/A A0A7Y5Z1U6 38924412
    449390 8v6s:B (1.6) BS01 YG8 ? N/A A0A7Y5Z1U6 38924412
    449391 8v6u:A (3.0) BS01 YEQ ? N/A P28223 38753765
    449392 8v6v:W (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    449393 8v6v:X (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    449394 8v7a:A (1.95) BS03 DCP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    449395 8v7b:A (1.9) BS03 HF4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    449396 8v7c:A (1.79) BS03 GTF 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    449397 8v7d:A (1.95) BS03 CTP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    449398 8v7e:A (1.82) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    449399 8v7f:A (2.2) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    449400 8v7g:A (1.52) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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