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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    449001 8uxs:A (2.0) BS01 XU8 N/A N/A Q9Y2U9 N/A
    449002 8uxs:B (2.0) BS01 XU8 N/A N/A Q9Y2U9 N/A
    449003 8uxu:A (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    449004 8uxu:B (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    449005 8uxu:C (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    449006 8uxu:D (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    449007 8uxu:E (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    449008 8uxu:F (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    449009 8uxu:G (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    449010 8uxu:H (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    449011 8uxu:I (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    449012 8uxu:J (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    449013 8uxu:K (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    449014 8uxu:L (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    449015 8uxu:M (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    449016 8uxu:N (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    449017 8uxw:A (2.7) BS01 ADP ? GO:0003779 ... P32390 38448439
    449018 8uxw:B (2.7) BS01 ATP ? GO:0000147 ... Q9UUJ1 38448439
    449019 8uxw:H (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449020 8uxw:I (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449021 8uxw:M (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449022 8uxw:N (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449023 8uxw:O (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449024 8uxw:P (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449025 8uxw:Q (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449026 8uxw:R (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449027 8uxx:A (3.2) BS01 ADP ? GO:0003779 ... P32390 38448439
    449028 8uxx:A (3.2) BS02 BEF ? GO:0003779 ... P32390 38448439
    449029 8uxx:B (3.2) BS01 ATP ? GO:0000147 ... Q9UUJ1 38448439
    449030 8uxx:H (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449031 8uxx:I (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449032 8uxx:M (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449033 8uxx:M (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    449034 8uxx:N (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449035 8uxx:N (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    449036 8uxx:O (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449037 8uxx:O (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    449038 8uxx:P (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449039 8uxx:P (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    449040 8uxx:Q (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449041 8uxx:Q (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    449042 8uxx:R (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449043 8uxx:R (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    449044 8uy1:A (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    449045 8uy1:B (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    449046 8uy1:C (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    449047 8uy1:D (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    449048 8uy2:A (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    449049 8uy2:A (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    449050 8uy2:A (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    449051 8uy2:B (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    449052 8uy2:B (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    449053 8uy2:B (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    449054 8uy2:C (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    449055 8uy2:C (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    449056 8uy2:C (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    449057 8uy2:D (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    449058 8uy2:D (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    449059 8uy2:D (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    449060 8uy6:A (1.9) BS01 CDL N/A N/A P60844 N/A
    449061 8uy6:C (1.9) BS01 CDL N/A N/A P60844 N/A
    449062 8uy6:E (1.9) BS01 CDL N/A N/A P60844 N/A
    449063 8uy6:G (1.9) BS01 CDL N/A N/A P60844 N/A
    449064 8uy6:I (1.9) BS01 CDL N/A N/A P60844 N/A
    449065 8uy6:K (1.9) BS01 CDL N/A N/A P60844 N/A
    449066 8uy6:M (1.9) BS01 CDL N/A N/A P60844 N/A
    449067 8uy6:O (1.9) BS01 CDL N/A N/A P60844 N/A
    449068 8uyd:A (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    449069 8uyd:B (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    449070 8uyh:A (2.84) BS01 ANP 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    449071 8uyh:B (2.84) BS01 ANP 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    449072 8uyi:A (3.13) BS01 ADP 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    449073 8uyi:B (3.13) BS01 ADP 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    449074 8uyn:A (2.0) BS01 4OL N/A N/A P80188 39009580
    449075 8uyn:B (2.0) BS01 4OL N/A N/A P80188 39009580
    449076 8uyn:C (2.0) BS01 PIN N/A N/A P80188 39009580
    449077 8uyn:C (2.0) BS02 4OL N/A N/A P80188 39009580
    449078 8uz0:J (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449079 8uz0:K (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449080 8uz0:L (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449081 8uz0:M (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449082 8uz0:N (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449083 8uz0:O (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449084 8uz0:P (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449085 8uz0:Q (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449086 8uz0:R (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449087 8uz1:J (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449088 8uz1:J (3.6) BS03 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    449089 8uz1:K (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449090 8uz1:K (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    449091 8uz1:L (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449092 8uz1:L (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    449093 8uz1:M (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449094 8uz1:M (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    449095 8uz1:N (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449096 8uz1:N (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    449097 8uz1:O (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449098 8uz1:O (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    449099 8uz1:P (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449100 8uz1:P (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    449101 8uz1:Q (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449102 8uz1:Q (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    449103 8uz1:R (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    449104 8uz1:R (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    449105 8uz5:A (5.9) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    449106 8uz5:B (5.9) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    449107 8uz6:A (7.1) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    449108 8uz6:B (7.1) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    449109 8uz9:A (2.08) BS01 4OL N/A N/A P80188 39009580
    449110 8uz9:B (2.08) BS01 4OL N/A N/A P80188 39009580
    449111 8uz9:C (2.08) BS01 4OL N/A N/A P80188 39009580
    449112 8uzd:A (2.721) BS01 SAH N/A GO:0008168 ... N/A N/A
    449113 8uzd:A (2.721) BS02 CFF N/A GO:0008168 ... N/A N/A
    449114 8uzd:B (2.721) BS01 SAH N/A GO:0008168 ... N/A N/A
    449115 8uzd:B (2.721) BS02 CFF N/A GO:0008168 ... N/A N/A
    449116 8uzj:A (2.3) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449117 8uzj:A (2.3) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449118 8uzj:A (2.3) BS04 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449119 8uzj:A (2.3) BS05 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449120 8uzj:A (2.3) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449121 8uzj:B (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449122 8uzj:B (2.3) BS02 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449123 8uzj:B (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449124 8uzj:B (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449125 8uzj:B (2.3) BS06 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449126 8uzj:C (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449127 8uzj:C (2.3) BS02 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449128 8uzj:C (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449129 8uzj:C (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449130 8uzj:C (2.3) BS06 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449131 8uzj:D (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449132 8uzj:D (2.3) BS02 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449133 8uzj:D (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449134 8uzj:D (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449135 8uzj:D (2.3) BS06 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449136 8uzj:E (2.3) BS01 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449137 8uzj:E (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449138 8uzj:E (2.3) BS03 IVM ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449139 8uzj:E (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449140 8uzj:E (2.3) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    449141 8uzk:A (1.9) BS01 NAP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    449142 8uzk:B (1.9) BS01 NAP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    449143 8uzk:C (1.9) BS01 NAP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    449144 8uzk:D (1.9) BS01 NAP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    449145 8uzk:D (1.9) BS02 NAP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    449146 8uzm:A (2.2) BS01 NDP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    449147 8uzm:B (2.2) BS01 NDP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    449148 8uzm:C (2.2) BS01 NDP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    449149 8uzm:D (2.2) BS01 NDP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    449150 8uzn:A (2.15) BS01 AMP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    449151 8uzn:B (2.15) BS01 AMP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    449152 8uzn:C (2.15) BS01 AMP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    449153 8uzn:D (2.15) BS01 AMP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    449154 8uzo:A (2.1) BS01 ADP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    449155 8uzo:B (2.1) BS01 ADP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    449156 8uzo:C (2.1) BS01 ADP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    449157 8uzo:D (2.1) BS01 ADP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    449158 8uzu:A (1.9) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    449159 8uzu:B (1.9) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    449160 8uzu:C (1.9) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    449161 8uzu:D (1.9) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    449162 8uzv:A (1.846) BS01 Y9G N/A N/A Q9NUW8 N/A
    449163 8uzv:B (1.846) BS01 Y9G N/A N/A Q9NUW8 N/A
    449164 8uzx:A (5.4) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    449165 8uzx:B (5.4) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    449166 8uzy:A (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    449167 8uzy:B (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    449168 8uzz:A (1.93) BS01 YA5 N/A N/A Q9NUW8 N/A
    449169 8uzz:B (1.93) BS01 YA5 N/A N/A Q9NUW8 N/A
    449170 8v01:A (5.5) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    449171 8v01:B (5.5) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    449172 8v02:D (2.9) BS01 JZ0 N/A GO:0004984 ... Q177X3 38870275
    449173 8v04:B (1.58) BS01 GBS 3.4.21.122 GO:0004252 ... O15393 N/A
    449174 8v05:A (2.08) BS01 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    449175 8v05:A (2.08) BS02 CYS 3.1.16.1 GO:0003824 ... O35405 38537643
    449176 8v06:B (2.73) BS01 BMA 3.1.16.1 GO:0003824 ... O35405 38537643
    449177 8v06:B (2.73) BS02 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    449178 8v07:B (1.99) BS01 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    449179 8v07:B (1.99) BS02 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    449180 8v07:C (1.99) BS01 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    449181 8v09:A (1.61) BS01 PGH N/A N/A N/A 39145435
    449182 8v0a:B (2.05) BS01 PGH N/A N/A N/A 39145435
    449183 8v0b:A (1.65) BS01 YCI N/A N/A Q9NUW8 N/A
    449184 8v0b:B (1.65) BS01 YCI N/A N/A Q9NUW8 N/A
    449185 8v0c:A (1.62) BS01 YE3 N/A N/A Q9NUW8 N/A
    449186 8v0c:B (1.62) BS01 YE3 N/A N/A Q9NUW8 N/A
    449187 8v0i:A (5.8) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    449188 8v0i:B (5.8) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    449189 8v0k:A (5.2) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    449190 8v0k:B (5.2) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    449191 8v0y:A (7.0) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    449192 8v0y:B (7.0) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    449193 8v15:A (2.4) BS03 CNA 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    449194 8v15:C (2.4) BS03 Y4T 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    449195 8v15:C (2.4) BS04 CNA 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    449196 8v1f:B (2.19) BS01 7R8 3.4.21.122 GO:0004252 ... O15393 N/A
    449197 8v1f:C (2.19) BS01 FUC 3.4.21.122 GO:0016020 ... O15393 N/A
    449198 8v1f:D (2.19) BS01 7R8 3.4.21.122 GO:0004252 ... O15393 N/A
    449199 8v1l:A (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13    		 N/A Q13283 38284934
    449200 8v1l:B (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13    		 N/A Q13283 38284934
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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