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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    448801 8uuk:C (2.5) BS06 AV0 ? GO:0005886 ... I3L8V6 38184688
    448802 8uuk:D (2.5) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    448803 8uuk:D (2.5) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    448804 8uuk:D (2.5) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    448805 8uuk:D (2.5) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    448806 8uuk:D (2.5) BS05 LBN ? GO:0005886 ... I3L8V6 38184688
    448807 8uuk:D (2.5) BS06 AV0 ? GO:0005886 ... I3L8V6 38184688
    448808 8uuu:A (3.01) BS01 XYR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 38547259
    448809 8uuv:A (3.01) BS01 Y2I 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 38547259
    448810 8uuw:A (3.2) BS01 Y2N 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 38547259
    448811 8uuy:A (3.05) BS01 Y2R 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 38547259
    448812 8uv0:A (1.55) BS01 XKU 2.7.11.22 GO:0000082 ... P24941 38325398
    448813 8uv1:A (1.83) BS01 XK6 N/A N/A Q9NUW8 N/A
    448814 8uv1:A (1.83) BS02 XK6 N/A N/A Q9NUW8 N/A
    448815 8uv1:A (1.83) BS03 XK6 N/A N/A Q9NUW8 N/A
    448816 8uv1:A (1.83) BS04 XK6 N/A N/A Q9NUW8 N/A
    448817 8uv1:B (1.83) BS01 XK6 N/A N/A Q9NUW8 N/A
    448818 8uv1:B (1.83) BS02 XK6 N/A N/A Q9NUW8 N/A
    448819 8uv1:B (1.83) BS03 XK6 N/A N/A Q9NUW8 N/A
    448820 8uv1:B (1.83) BS04 XK6 N/A N/A Q9NUW8 N/A
    448821 8uv1:B (1.83) BS05 XK6 N/A N/A Q9NUW8 N/A
    448822 8uv2:A (3.23) BS01 ADP N/A N/A P55072 39122922
    448823 8uv2:A (3.23) BS02 ADP N/A N/A P55072 39122922
    448824 8uv2:A (3.23) BS03 XKM N/A N/A P55072 39122922
    448825 8uv2:B (3.23) BS01 ADP N/A N/A P55072 39122922
    448826 8uv2:B (3.23) BS02 ADP N/A N/A P55072 39122922
    448827 8uv2:B (3.23) BS03 XKM N/A N/A P55072 39122922
    448828 8uv2:C (3.23) BS01 ADP N/A N/A P55072 39122922
    448829 8uv2:C (3.23) BS02 ADP N/A N/A P55072 39122922
    448830 8uv2:C (3.23) BS03 XKM N/A N/A P55072 39122922
    448831 8uv2:D (3.23) BS01 ADP N/A N/A P55072 39122922
    448832 8uv2:D (3.23) BS02 ADP N/A N/A P55072 39122922
    448833 8uv2:D (3.23) BS03 XKM N/A N/A P55072 39122922
    448834 8uv2:E (3.23) BS01 ADP N/A N/A P55072 39122922
    448835 8uv2:E (3.23) BS02 ADP N/A N/A P55072 39122922
    448836 8uv2:E (3.23) BS03 XKM N/A N/A P55072 39122922
    448837 8uv2:F (3.23) BS01 ADP N/A N/A P55072 39122922
    448838 8uv2:F (3.23) BS02 ADP N/A N/A P55072 39122922
    448839 8uv2:F (3.23) BS03 XKM N/A N/A P55072 39122922
    448840 8uvl:A (2.43) BS01 XOE 2.7.11.1
    3.1.26.-    		 N/A O75460 38748820
    448841 8uvm:A (2.85) BS01 Y3R 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 38547259
    448842 8uvm:B (2.85) BS01 Y3R 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 38547259
    448843 8uvm:C (2.85) BS01 Y3R 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 38547259
    448844 8uvm:D (2.85) BS01 Y3R 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 38547259
    448845 8uvo:A (3.22) BS01 ADP N/A N/A P55072 39122922
    448846 8uvo:A (3.22) BS02 ADP N/A N/A P55072 39122922
    448847 8uvo:A (3.22) BS03 XNU N/A N/A P55072 39122922
    448848 8uvo:B (3.22) BS01 ADP N/A N/A P55072 39122922
    448849 8uvo:B (3.22) BS02 ADP N/A N/A P55072 39122922
    448850 8uvo:B (3.22) BS03 XNU N/A N/A P55072 39122922
    448851 8uvo:C (3.22) BS01 ADP N/A N/A P55072 39122922
    448852 8uvo:C (3.22) BS02 ADP N/A N/A P55072 39122922
    448853 8uvo:C (3.22) BS03 XNU N/A N/A P55072 39122922
    448854 8uvo:D (3.22) BS01 ADP N/A N/A P55072 39122922
    448855 8uvo:D (3.22) BS02 ADP N/A N/A P55072 39122922
    448856 8uvo:D (3.22) BS03 XNU N/A N/A P55072 39122922
    448857 8uvo:E (3.22) BS01 ADP N/A N/A P55072 39122922
    448858 8uvo:E (3.22) BS02 ADP N/A N/A P55072 39122922
    448859 8uvo:E (3.22) BS03 XNU N/A N/A P55072 39122922
    448860 8uvo:F (3.22) BS01 ADP N/A N/A P55072 39122922
    448861 8uvo:F (3.22) BS02 ADP N/A N/A P55072 39122922
    448862 8uvo:F (3.22) BS03 XNU N/A N/A P55072 39122922
    448863 8uvp:A (3.6) BS01 ADP N/A N/A P55072 39122922
    448864 8uvp:A (3.6) BS02 ADP N/A N/A P55072 39122922
    448865 8uvp:A (3.6) BS03 XO8 N/A N/A P55072 39122922
    448866 8uvp:B (3.6) BS01 ADP N/A N/A P55072 39122922
    448867 8uvp:B (3.6) BS02 ADP N/A N/A P55072 39122922
    448868 8uvp:B (3.6) BS03 XO8 N/A N/A P55072 39122922
    448869 8uvp:C (3.6) BS01 ADP N/A N/A P55072 39122922
    448870 8uvp:C (3.6) BS02 ADP N/A N/A P55072 39122922
    448871 8uvp:C (3.6) BS03 XO8 N/A N/A P55072 39122922
    448872 8uvp:D (3.6) BS01 ADP N/A N/A P55072 39122922
    448873 8uvp:D (3.6) BS02 ADP N/A N/A P55072 39122922
    448874 8uvp:D (3.6) BS03 XO8 N/A N/A P55072 39122922
    448875 8uvp:E (3.6) BS01 ADP N/A N/A P55072 39122922
    448876 8uvp:E (3.6) BS02 ADP N/A N/A P55072 39122922
    448877 8uvp:E (3.6) BS03 XO8 N/A N/A P55072 39122922
    448878 8uvp:F (3.6) BS01 ADP N/A N/A P55072 39122922
    448879 8uvp:F (3.6) BS02 ADP N/A N/A P55072 39122922
    448880 8uvp:F (3.6) BS03 XO8 N/A N/A P55072 39122922
    448881 8uvq:A (3.42) BS01 ADP N/A N/A P55072 39122922
    448882 8uvq:A (3.42) BS02 ADP N/A N/A P55072 39122922
    448883 8uvq:A (3.42) BS03 XO8 N/A N/A P55072 39122922
    448884 8uvq:B (3.42) BS01 ADP N/A N/A P55072 39122922
    448885 8uvq:B (3.42) BS02 ADP N/A N/A P55072 39122922
    448886 8uvq:B (3.42) BS03 XO8 N/A N/A P55072 39122922
    448887 8uvq:C (3.42) BS01 ADP N/A N/A P55072 39122922
    448888 8uvq:C (3.42) BS02 ADP N/A N/A P55072 39122922
    448889 8uvq:C (3.42) BS03 XO8 N/A N/A P55072 39122922
    448890 8uvq:D (3.42) BS01 ADP N/A N/A P55072 39122922
    448891 8uvq:D (3.42) BS02 ADP N/A N/A P55072 39122922
    448892 8uvq:D (3.42) BS03 XO8 N/A N/A P55072 39122922
    448893 8uvq:E (3.42) BS01 ADP N/A N/A P55072 39122922
    448894 8uvq:E (3.42) BS02 ADP N/A N/A P55072 39122922
    448895 8uvq:E (3.42) BS03 XO8 N/A N/A P55072 39122922
    448896 8uvq:F (3.42) BS01 ADP N/A N/A P55072 39122922
    448897 8uvq:F (3.42) BS02 ADP N/A N/A P55072 39122922
    448898 8uvq:F (3.42) BS03 XO8 N/A N/A P55072 39122922
    448899 8uvr:1d (2.6) BS02 SF4 N/A N/A P80373 38165935
    448900 8uvr:1e (2.6) BS02 SCM N/A N/A Q5SHQ5 38165935
    448901 8uvr:2d (2.6) BS03 SF4 N/A N/A P80373 38165935
    448902 8uvs:1d (2.75) BS02 SF4 N/A N/A P80373 38165935
    448903 8uvs:1e (2.75) BS02 Y7K N/A N/A Q5SHQ5 38165935
    448904 8uvs:2d (2.75) BS03 SF4 N/A N/A P80373 38165935
    448905 8uvs:2e (2.75) BS02 Y7K N/A N/A Q5SHQ5 38165935
    448906 8uvu:A (3.0) BS01 BDF ? GO:0001582 ... B3GTD7 38447670
    448907 8uvu:A (3.0) BS02 FRU ? GO:0001582 ... B3GTD7 38447670
    448908 8uvu:B (3.0) BS01 BDF ? GO:0001582 ... B3GTD7 38447670
    448909 8uvu:B (3.0) BS02 FRU ? GO:0001582 ... B3GTD7 38447670
    448910 8uvu:C (3.0) BS01 BDF ? GO:0001582 ... B3GTD7 38447670
    448911 8uvu:C (3.0) BS02 FRU ? GO:0001582 ... B3GTD7 38447670
    448912 8uvu:D (3.0) BS01 BDF ? GO:0001582 ... B3GTD7 38447670
    448913 8uvu:D (3.0) BS02 FRU ? GO:0001582 ... B3GTD7 38447670
    448914 8uvv:A (2.5) BS01 SIA N/A N/A N/A 39251137
    448915 8uvy:A (2.11) BS01 XOO N/A N/A P31749 N/A
    448916 8uvz:A (0.93) BS01 NAP 1.5.1.3 GO:0004146 ... P11045 N/A
    448917 8uw0:A (0.93) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    448918 8uw2:A (2.2) BS01 XOO N/A N/A P31749 N/A
    448919 8uw3:A (3.2) BS03 TTP 2.7.7.49
    3.1.21.-    		 GO:0003723 ... O00370 38096901
    448920 8uw7:A (1.972) BS01 XOO N/A N/A P31749 N/A
    448921 8uw9:A (1.9) BS01 XQ2 N/A N/A P31749 N/A
    448922 8uwa:B (4.02) BS01 MAN ? GO:0019031 ... C6KNH7 38670113
    448923 8uwp:A (1.77) BS01 XRU 2.1.1.366 N/A Q15047 N/A
    448924 8uwp:B (1.77) BS01 XRU 2.1.1.366 N/A Q15047 N/A
    448925 8ux2:A (1.87) BS01 NAD 2.4.2.- N/A Q7NY09 38159861
    448926 8ux2:B (1.87) BS01 NAD 2.4.2.- N/A Q7NY09 38159861
    448927 8ux2:C (1.87) BS01 NAD 2.4.2.- N/A Q7NY09 38159861
    448928 8ux7:A (2.2) BS03 XMM ? GO:0005509 ... B3EWJ2 N/A
    448929 8ux7:B (2.2) BS03 XMM ? GO:0005509 ... B3EWJ2 N/A
    448930 8ux9:B (3.2) BS01 AGS N/A N/A N/A N/A
    448931 8ux9:B (3.2) BS02 AGS N/A N/A N/A N/A
    448932 8ux9:C (3.2) BS01 AGS N/A N/A N/A N/A
    448933 8uxc:A (2.86) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448934 8uxc:A (2.86) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448935 8uxc:B (2.86) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448936 8uxc:B (2.86) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448937 8uxc:C (2.86) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448938 8uxc:C (2.86) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448939 8uxc:D (2.86) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448940 8uxc:D (2.86) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448941 8uxe:A (3.53) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448942 8uxe:A (3.53) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448943 8uxe:A (3.53) BS04 KVR ? GO:0001666 ... Q92736 39278969
    448944 8uxe:B (3.53) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448945 8uxe:B (3.53) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448946 8uxe:B (3.53) BS04 KVR ? GO:0001666 ... Q92736 39278969
    448947 8uxe:C (3.53) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448948 8uxe:C (3.53) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448949 8uxe:C (3.53) BS04 KVR ? GO:0001666 ... Q92736 39278969
    448950 8uxe:D (3.53) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448951 8uxe:D (3.53) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448952 8uxe:D (3.53) BS04 KVR ? GO:0001666 ... Q92736 39278969
    448953 8uxf:A (3.13) BS02 ATP ? GO:0001666 ... Q92736 N/A
    448954 8uxf:A (3.13) BS03 ATP ? GO:0001666 ... Q92736 N/A
    448955 8uxf:B (3.13) BS02 ATP ? GO:0001666 ... Q92736 N/A
    448956 8uxf:B (3.13) BS03 ATP ? GO:0001666 ... Q92736 N/A
    448957 8uxf:C (3.13) BS02 ATP ? GO:0001666 ... Q92736 N/A
    448958 8uxf:C (3.13) BS03 ATP ? GO:0001666 ... Q92736 N/A
    448959 8uxf:D (3.13) BS02 ATP ? GO:0001666 ... Q92736 N/A
    448960 8uxf:D (3.13) BS03 ATP ? GO:0001666 ... Q92736 N/A
    448961 8uxg:A (3.08) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448962 8uxg:A (3.08) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448963 8uxg:A (3.08) BS04 KVR ? GO:0001666 ... Q92736 39278969
    448964 8uxg:B (3.08) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448965 8uxg:B (3.08) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448966 8uxg:B (3.08) BS04 KVR ? GO:0001666 ... Q92736 39278969
    448967 8uxg:C (3.08) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448968 8uxg:C (3.08) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448969 8uxg:C (3.08) BS04 KVR ? GO:0001666 ... Q92736 39278969
    448970 8uxg:D (3.08) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448971 8uxg:D (3.08) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448972 8uxg:D (3.08) BS04 KVR ? GO:0001666 ... Q92736 39278969
    448973 8uxh:A (3.52) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448974 8uxh:A (3.52) BS04 ATP ? GO:0001666 ... Q92736 39278969
    448975 8uxh:B (3.52) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448976 8uxh:B (3.52) BS04 ATP ? GO:0001666 ... Q92736 39278969
    448977 8uxh:C (3.52) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448978 8uxh:C (3.52) BS04 ATP ? GO:0001666 ... Q92736 39278969
    448979 8uxh:D (3.52) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448980 8uxh:D (3.52) BS04 ATP ? GO:0001666 ... Q92736 39278969
    448981 8uxi:A (3.29) BS02 ATP ? GO:0001666 ... Q92736 N/A
    448982 8uxi:A (3.29) BS04 ATP ? GO:0001666 ... Q92736 N/A
    448983 8uxi:B (3.29) BS02 ATP ? GO:0001666 ... Q92736 N/A
    448984 8uxi:B (3.29) BS04 ATP ? GO:0001666 ... Q92736 N/A
    448985 8uxi:C (3.29) BS02 ATP ? GO:0001666 ... Q92736 N/A
    448986 8uxi:C (3.29) BS04 ATP ? GO:0001666 ... Q92736 N/A
    448987 8uxi:D (3.29) BS02 ATP ? GO:0001666 ... Q92736 N/A
    448988 8uxi:D (3.29) BS04 ATP ? GO:0001666 ... Q92736 N/A
    448989 8uxl:A (3.12) BS02 ATP ? GO:0001666 ... Q92736 N/A
    448990 8uxl:A (3.12) BS04 ATP ? GO:0001666 ... Q92736 N/A
    448991 8uxl:B (3.12) BS02 ATP ? GO:0001666 ... Q92736 N/A
    448992 8uxl:B (3.12) BS04 ATP ? GO:0001666 ... Q92736 N/A
    448993 8uxl:C (3.12) BS02 ATP ? GO:0001666 ... Q92736 N/A
    448994 8uxl:C (3.12) BS04 ATP ? GO:0001666 ... Q92736 N/A
    448995 8uxl:D (3.12) BS02 ATP ? GO:0001666 ... Q92736 N/A
    448996 8uxl:D (3.12) BS04 ATP ? GO:0001666 ... Q92736 N/A
    448997 8uxm:A (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    448998 8uxm:B (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    448999 8uxm:C (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    449000 8uxm:D (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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