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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    448401 8umw:D (2.93) BS04 AGS ? GO:0003677 ... P35249 38669181
    448402 8umw:E (2.93) BS02 AGS ? GO:0000731 ... P40938 38669181
    448403 8umw:E (2.93) BS03 ADP ? GO:0000731 ... P40938 38669181
    448404 8umy:A (2.83) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    448405 8umy:B (2.83) BS02 AGS ? GO:0003677 ... P35250 38669181
    448406 8umy:B (2.83) BS04 AGS ? GO:0003677 ... P35250 38669181
    448407 8umy:C (2.83) BS02 AGS ? GO:0003677 ... P40937 38669181
    448408 8umy:C (2.83) BS03 AGS ? GO:0003677 ... P40937 38669181
    448409 8umy:D (2.83) BS02 AGS ? GO:0003677 ... P35249 38669181
    448410 8umy:D (2.83) BS04 AGS ? GO:0003677 ... P35249 38669181
    448411 8umy:E (2.83) BS02 AGS ? GO:0000731 ... P40938 38669181
    448412 8umy:E (2.83) BS03 ADP ? GO:0000731 ... P40938 38669181
    448413 8un0:A (3.0) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    448414 8un0:B (3.0) BS03 AGS ? GO:0003677 ... P35250 38669181
    448415 8un0:B (3.0) BS04 AGS ? GO:0003677 ... P35250 38669181
    448416 8un0:C (3.0) BS02 AGS ? GO:0003677 ... P40937 38669181
    448417 8un0:C (3.0) BS03 AGS ? GO:0003677 ... P40937 38669181
    448418 8un0:D (3.0) BS02 AGS ? GO:0003677 ... P35249 38669181
    448419 8un0:D (3.0) BS04 AGS ? GO:0003677 ... P35249 38669181
    448420 8un0:E (3.0) BS02 AGS ? GO:0000731 ... P40938 38669181
    448421 8un0:E (3.0) BS03 ADP ? GO:0000731 ... P40938 38669181
    448422 8un3:A (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    448423 8un3:A (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    448424 8un3:B (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    448425 8un3:B (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    448426 8un3:C (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    448427 8un3:C (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    448428 8un3:D (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    448429 8un3:D (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    448430 8un4:A (1.57) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    448431 8un4:A (1.57) BS02 XV3 3.6.5.2 GO:0003924 ... P01116 38229748
    448432 8un5:A (1.31) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    448433 8un5:A (1.31) BS02 XQ6 3.6.5.2 GO:0003924 ... P01116 38229748
    448434 8un5:B (1.31) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    448435 8un5:B (1.31) BS02 XQ6 3.6.5.2 GO:0003924 ... P01116 38229748
    448436 8unf:B (3.15) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    448437 8unf:C (3.15) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    448438 8unf:D (3.15) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    448439 8unf:E (3.15) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    448440 8unh:B (3.21) BS01 AGS 3.6.4.- GO:0003677 ... P04526 38177685
    448441 8unh:E (3.21) BS01 AGS 3.6.4.- GO:0003677 ... P04526 38177685
    448442 8unj:B (3.35) BS02 AGS ? GO:0003677 ... P35250 38669181
    448443 8unj:C (3.35) BS01 AGS ? GO:0003677 ... P40937 38669181
    448444 8unj:D (3.35) BS01 AGS ? GO:0003677 ... P35249 38669181
    448445 8unj:E (3.35) BS01 ADP ? GO:0000731 ... P40938 38669181
    448446 8unl:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    448447 8unl:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    448448 8unm:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    448449 8unm:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    448450 8unn:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    448451 8unn:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    448452 8uno:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    448453 8uno:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    448454 8unp:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    448455 8unp:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    448456 8unq:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    448457 8unq:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    448458 8unr:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    448459 8unr:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    448460 8uns:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    448461 8uns:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    448462 8unt:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    448463 8unt:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    448464 8unu:A (3.5) BS01 GTP ? GO:0002862 ... P63092 38480881
    448465 8unu:R (3.5) BS01 G1I ? GO:0004930 ... P07550 38480881
    448466 8unv:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    448467 8unv:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    448468 8unw:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    448469 8unw:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    448470 8unx:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    448471 8unx:R (3.6) BS01 G1I ? GO:0004930 ... P07550 38480881
    448472 8uny:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    448473 8uny:R (3.6) BS01 G1I ? GO:0004930 ... P07550 38480881
    448474 8unz:A (3.8) BS01 GTP ? GO:0002862 ... P63092 38480881
    448475 8unz:R (3.8) BS01 G1I ? GO:0004930 ... P07550 38480881
    448476 8uo0:A (3.5) BS01 GTP ? GO:0002862 ... P63092 38480881
    448477 8uo0:R (3.5) BS01 G1I ? GO:0004930 ... P07550 38480881
    448478 8uo1:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    448479 8uo1:R (3.6) BS01 G1I ? GO:0001540 ... P07550 38480881
    448480 8uo2:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    448481 8uo2:R (3.6) BS01 G1I ? GO:0004930 ... P07550 38480881
    448482 8uo3:A (3.5) BS01 GTP ? GO:0002862 ... P63092 38480881
    448483 8uo3:R (3.5) BS01 G1I ? GO:0004930 ... P07550 38480881
    448484 8uo4:A (4.0) BS01 GTP ? GO:0002862 ... P63092 38480881
    448485 8uo8:A (3.2) BS01 X3U ? GO:0001669 ... Q7L1I2 38898101
    448486 8uo8:A (3.2) BS02 PS1 ? GO:0001669 ... Q7L1I2 38898101
    448487 8uo8:A (3.2) BS03 9Z9 ? GO:0001669 ... Q7L1I2 38898101
    448488 8uo8:A (3.2) BS04 9Z9 ? GO:0001669 ... Q7L1I2 38898101
    448489 8uo8:A (3.2) BS05 43Y ? GO:0001669 ... Q7L1I2 38898101
    448490 8uo8:A (3.2) BS06 Y01 ? GO:0001669 ... Q7L1I2 38898101
    448491 8uo9:A (3.3) BS01 X49 ? GO:0005783 ... Q7L0J3 38898101
    448492 8uo9:A (3.3) BS02 Y01 ? GO:0005783 ... Q7L0J3 38898101
    448493 8uo9:A (3.3) BS03 PS1 ? GO:0005783 ... Q7L0J3 38898101
    448494 8uob:A (2.52) BS01 XB5 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0006508 ... P0DTD1 38547259
    448495 8uou:A (1.35) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    448496 8uou:B (1.35) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    448497 8uoz:A (-1.00) BS01 P4P ? GO:0005886 ... P23895 38806470
    448498 8uoz:B (-1.00) BS01 P4P ? GO:0005886 ... P23895 38806470
    448499 8up3:E (1.76) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    448500 8up3:F (1.76) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    448501 8up6:B (1.7) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    448502 8up6:C (1.7) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    448503 8up8:A (1.9) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    448504 8up8:B (1.9) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    448505 8up8:C (1.9) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    448506 8uph:A (4.13) BS01 BLA N/A N/A A0A1H7ZJA8 39121216
    448507 8uph:B (4.13) BS01 BLA N/A N/A A0A1H7ZJA8 39121216
    448508 8upi:A (1.55) BS02 SET ? GO:0043190 ... A0A7R6WUD2 38696389
    448509 8upk:A (3.75) BS01 BLA N/A N/A A0A1H7ZJA8 39121216
    448510 8upk:B (3.75) BS01 BLA N/A N/A A0A1H7ZJA8 39121216
    448511 8upm:A (3.75) BS01 BLA N/A N/A A0A1H7ZJA8 39121216
    448512 8upm:B (3.75) BS01 BLA N/A N/A A0A1H7ZJA8 39121216
    448513 8upn:A (2.59) BS03 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448514 8upn:A (2.59) BS04 WXU 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448515 8upp:A (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448516 8upp:A (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448517 8upp:A (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448518 8upp:A (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448519 8upp:B (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448520 8upp:B (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448521 8upp:B (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448522 8upp:B (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448523 8upp:C (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448524 8upp:C (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448525 8upp:C (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448526 8upp:C (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448527 8upp:D (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448528 8upp:D (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448529 8upp:D (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448530 8upp:D (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448531 8upp:E (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448532 8upp:E (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448533 8upp:E (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448534 8upp:E (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448535 8upp:F (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448536 8upp:F (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448537 8upp:F (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448538 8upp:F (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448539 8upp:G (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448540 8upp:G (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448541 8upp:G (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448542 8upp:H (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448543 8upp:H (1.78) BS03 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448544 8upp:H (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448545 8upp:H (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448546 8upp:I (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448547 8upp:I (1.78) BS03 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448548 8upp:I (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448549 8upp:I (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448550 8upp:J (1.78) BS01 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448551 8upp:J (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448552 8upp:J (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448553 8upp:J (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448554 8upp:K (1.78) BS01 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448555 8upp:K (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448556 8upp:K (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448557 8upp:K (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448558 8upp:L (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448559 8upp:L (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448560 8upp:L (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448561 8upq:A (2.45) BS02 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448562 8upq:A (2.45) BS03 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448563 8upq:B (2.45) BS01 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448564 8upq:B (2.45) BS03 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448565 8upq:C (2.45) BS02 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448566 8upq:C (2.45) BS03 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448567 8upq:D (2.45) BS01 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448568 8upq:D (2.45) BS03 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448569 8upq:E (2.45) BS02 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448570 8upq:F (2.45) BS02 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    448571 8ups:A (2.44) BS01 I70 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38365209
    448572 8upv:A (1.57) BS01 X83 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38365209
    448573 8upw:A (1.44) BS01 X8F 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38365209
    448574 8uq2:A (2.98) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448575 8uq2:A (2.98) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448576 8uq2:B (2.98) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448577 8uq2:B (2.98) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448578 8uq2:C (2.98) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448579 8uq2:C (2.98) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448580 8uq2:D (2.98) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448581 8uq2:D (2.98) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448582 8uq3:A (3.18) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448583 8uq3:A (3.18) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448584 8uq3:A (3.18) BS04 KVR ? GO:0001666 ... Q92736 39278969
    448585 8uq3:B (3.18) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448586 8uq3:B (3.18) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448587 8uq3:B (3.18) BS04 KVR ? GO:0001666 ... Q92736 39278969
    448588 8uq3:C (3.18) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448589 8uq3:C (3.18) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448590 8uq3:C (3.18) BS04 KVR ? GO:0001666 ... Q92736 39278969
    448591 8uq3:D (3.18) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448592 8uq3:D (3.18) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448593 8uq3:D (3.18) BS04 KVR ? GO:0001666 ... Q92736 39278969
    448594 8uq4:A (3.64) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448595 8uq4:A (3.64) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448596 8uq4:B (3.64) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448597 8uq4:B (3.64) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448598 8uq4:C (3.64) BS02 ATP ? GO:0001666 ... Q92736 39278969
    448599 8uq4:C (3.64) BS03 ATP ? GO:0001666 ... Q92736 39278969
    448600 8uq4:D (3.64) BS02 ATP ? GO:0001666 ... Q92736 39278969

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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