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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    446801 8u0v:C (3.89) BS03 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    446802 8u0v:D (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    446803 8u0v:D (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    446804 8u0v:D (3.89) BS03 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    446805 8u0v:E (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    446806 8u0v:E (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    446807 8u0v:F (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    446808 8u0y:A (3.0) BS01 PUB N/A N/A N/A N/A
    446809 8u0y:A (3.0) BS02 PUB N/A N/A N/A N/A
    446810 8u0y:A (3.0) BS03 PUB N/A N/A N/A N/A
    446811 8u0y:B (3.0) BS01 PUB N/A N/A N/A N/A
    446812 8u0y:B (3.0) BS02 PUB N/A N/A N/A N/A
    446813 8u0y:B (3.0) BS03 PUB N/A N/A N/A N/A
    446814 8u0z:A (1.399) BS01 N 2.4.2.10
    4.1.1.23    		 GO:0004590 ... A0A6P6VUE3 38184030
    446815 8u0z:B (1.399) BS01 N 2.4.2.10
    4.1.1.23    		 GO:0004590 ... A0A6P6VUE3 38184030
    446816 8u15:A (2.95) BS02 8W7 ? N/A Q96SW2 38086859
    446817 8u15:C (2.95) BS01 8W7 ? N/A Q9UJQ4 38086859
    446818 8u15:D (2.95) BS02 8W7 ? N/A Q96SW2 38086859
    446819 8u15:F (2.95) BS01 8W7 ? N/A Q9UJQ4 38086859
    446820 8u16:A (2.9) BS02 Y70 ? N/A Q96SW2 38086859
    446821 8u16:C (2.9) BS01 Y70 ? N/A Q9UJQ4 38086859
    446822 8u16:D (2.9) BS02 Y70 ? N/A Q96SW2 38086859
    446823 8u16:F (2.9) BS01 Y70 ? N/A Q9UJQ4 38086859
    446824 8u17:A (3.1) BS02 Y70 ? N/A Q96SW2 38086859
    446825 8u17:C (3.1) BS01 Y70 ? N/A Q9UJQ4 38086859
    446826 8u17:D (3.1) BS02 Y70 ? N/A Q96SW2 38086859
    446827 8u17:F (3.1) BS01 Y70 ? N/A Q9UJQ4 38086859
    446828 8u19:A (1.26) BS01 HEM N/A N/A N/A N/A
    446829 8u19:A (1.26) BS02 3DM N/A N/A N/A N/A
    446830 8u1f:A (3.33) BS01 UIM 2.7.10.1 GO:0004672 ... P21802 38300868
    446831 8u1f:B (3.33) BS01 UIM 2.7.10.1 GO:0004672 ... P21802 38300868
    446832 8u1h:A (3.0) BS01 ANP N/A N/A A0A0M3VGF9 N/A
    446833 8u1h:B (3.0) BS01 ANP N/A N/A A0A0M3VGF9 N/A
    446834 8u1h:B (3.0) BS02 ANP N/A N/A A0A0M3VGF9 N/A
    446835 8u1h:C (3.0) BS01 ANP N/A N/A A0A0M3VGF9 N/A
    446836 8u1h:D (3.0) BS01 ADP N/A N/A A0A0M4U1P9 N/A
    446837 8u1h:F (3.0) BS01 ANP N/A N/A A0A0M4U1P9 N/A
    446838 8u1i:A (1.12) BS01 HEM N/A N/A N/A N/A
    446839 8u1i:A (1.12) BS02 UB9 N/A N/A N/A N/A
    446840 8u1l:A (3.7) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    446841 8u1l:B (3.7) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    446842 8u1m:A (3.5) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    446843 8u1m:B (3.5) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    446844 8u1n:A (3.9) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    446845 8u1n:B (3.9) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    446846 8u1w:A (1.84) BS01 FHR 3.4.22.66
    3.6.1.15    		 GO:0004197 ... K4L8Z7 38005879
    446847 8u1w:A (1.84) BS02 FHR 3.4.22.66
    3.6.1.15    		 GO:0004197 ... K4L8Z7 38005879
    446848 8u1y:A (1.74) BS01 5V9 N/A N/A P0AEG4 N/A
    446849 8u27:A (-1.00) BS01 ULL ? GO:0042981 ... P10415
    Q07817    		 37875561
    446850 8u2a:A (1.99) BS01 5N6 N/A N/A N/A 39251137
    446851 8u2d:A (1.95) BS01 UQX 2.7.10.2 GO:0004672 ... Q06187 38300987
    446852 8u2e:A (1.9) BS01 UP9 2.7.10.2 GO:0004672 ... Q06187 38300987
    446853 8u2m:A (1.79) BS02 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    446854 8u2m:A (1.79) BS03 MRY 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    446855 8u2m:B (1.79) BS01 MRY 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    446856 8u2m:B (1.79) BS02 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    446857 8u2m:B (1.79) BS03 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    446858 8u2m:B (1.79) BS04 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    446859 8u2m:C (1.79) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    446860 8u2m:C (1.79) BS02 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    446861 8u2m:C (1.79) BS03 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    446862 8u2o:A (2.15) BS01 V3O 2.7.11.22 GO:0004672 ... Q8IDW1 N/A
    446863 8u2o:B (2.15) BS01 V3O 2.7.11.22 GO:0004672 ... Q8IDW1 N/A
    446864 8u2p:A (2.25) BS01 G5A 6.1.1.14 GO:0000166 ... P9WFV7 N/A
    446865 8u2q:A (2.45) BS01 G5A 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    446866 8u2q:B (2.45) BS02 G5A 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    446867 8u2r:A (1.55) BS01 WTA 6.2.1.1 GO:0003987 ... A4I093 N/A
    446868 8u2s:A (2.52) BS01 WTA 6.2.1.1 GO:0003987 ... A4I093 N/A
    446869 8u2s:B (2.52) BS01 WTA 6.2.1.1 GO:0003987 ... A4I093 N/A
    446870 8u2t:A (1.65) BS01 AMP 6.2.1.1 GO:0003987 ... A4I093 N/A
    446871 8u2t:A (1.65) BS02 COA 6.2.1.1 GO:0003987 ... A4I093 N/A
    446872 8u2u:A (1.97) BS01 AMP 6.2.1.1 GO:0003987 ... A4I093 N/A
    446873 8u2u:A (1.97) BS02 COA 6.2.1.1 GO:0003987 ... A4I093 N/A
    446874 8u2w:A (2.35) BS01 NAP N/A GO:0004345 ... N/A N/A
    446875 8u2w:B (2.35) BS01 NAP N/A GO:0004345 ... N/A N/A
    446876 8u2z:A (3.6) BS01 PIO ? GO:0005216 ... O35433 38698206
    446877 8u2z:A (3.6) BS02 CLR ? GO:0005216 ... O35433 38698206
    446878 8u2z:A (3.6) BS03 CLR ? GO:0005216 ... O35433 38698206
    446879 8u2z:A (3.6) BS04 PIO ? GO:0005216 ... O35433 38698206
    446880 8u2z:B (3.6) BS01 CLR ? GO:0005216 ... O35433 38698206
    446881 8u2z:B (3.6) BS02 PIO ? GO:0005216 ... O35433 38698206
    446882 8u2z:B (3.6) BS03 CLR ? GO:0005216 ... O35433 38698206
    446883 8u2z:B (3.6) BS04 PIO ? GO:0005216 ... O35433 38698206
    446884 8u2z:C (3.6) BS01 PIO ? GO:0005216 ... O35433 38698206
    446885 8u2z:C (3.6) BS02 CLR ? GO:0005216 ... O35433 38698206
    446886 8u2z:C (3.6) BS03 CLR ? GO:0005216 ... O35433 38698206
    446887 8u2z:C (3.6) BS04 PIO ? GO:0005216 ... O35433 38698206
    446888 8u2z:D (3.6) BS01 PIO ? GO:0005216 ... O35433 38698206
    446889 8u2z:D (3.6) BS02 CLR ? GO:0005216 ... O35433 38698206
    446890 8u2z:D (3.6) BS03 PIO ? GO:0005216 ... O35433 38698206
    446891 8u2z:D (3.6) BS04 CLR ? GO:0005216 ... O35433 38698206
    446892 8u30:A (3.0) BS01 PIO ? GO:0000122 ... O35433 38698206
    446893 8u30:B (3.0) BS01 PIO ? GO:0000122 ... O35433 38698206
    446894 8u30:C (3.0) BS01 PIO ? GO:0000122 ... O35433 38698206
    446895 8u30:D (3.0) BS01 PIO ? GO:0000122 ... O35433 38698206
    446896 8u37:A (2.48) BS01 V5U 2.7.11.13 GO:0004672 ... P17252 38198520
    446897 8u3a:A (2.3) BS01 VPN ? GO:0005216 ... O35433 38698206
    446898 8u3a:D (2.3) BS01 VPN ? GO:0005216 ... O35433 38698206
    446899 8u3c:A (2.3) BS01 VPN ? GO:0000122 ... O35433 38698206
    446900 8u3c:A (2.3) BS02 3PH ? GO:0000122 ... O35433 38698206
    446901 8u3c:D (2.3) BS01 3PH ? GO:0000122 ... O35433 38698206
    446902 8u3g:A (3.42) BS01 ASP ? GO:0005351 ... Q9NRA2 N/A
    446903 8u3g:A (3.42) BS02 GLU ? GO:0005351 ... Q9NRA2 N/A
    446904 8u3h:A (3.67) BS01 VP1 ? GO:0005351 ... Q9NRA2 N/A
    446905 8u3h:A (3.67) BS02 LEU ? GO:0005351 ... Q9NRA2 N/A
    446906 8u3n:A (2.15) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    446907 8u3n:A (2.15) BS02 BGC 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    446908 8u3n:B (2.15) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    446909 8u3n:B (2.15) BS02 BGC 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    446910 8u3n:C (2.15) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    446911 8u3n:C (2.15) BS02 BGC 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    446912 8u3o:A (1.88) BS01 O69 N/A N/A A0A7U3H5H9 N/A
    446913 8u3o:B (1.88) BS01 O69 N/A N/A A0A7U3H5H9 N/A
    446914 8u3p:A (1.79) BS01 HEM N/A N/A A0A0D5ZBI4 N/A
    446915 8u3p:B (1.79) BS01 HEM N/A N/A A0A0D5ZBI4 N/A
    446916 8u3p:C (1.79) BS01 HEM N/A N/A A0A0D5ZBI4 N/A
    446917 8u3p:D (1.79) BS01 HEM N/A N/A A0A0D5ZBI4 N/A
    446918 8u3z:A (3.6) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    446919 8u3z:B (3.6) BS01 G2P ? GO:0000226 ... P07437 38658656
    446920 8u3z:E (3.6) BS01 G2P ? GO:0000226 ... P07437 38658656
    446921 8u3z:F (3.6) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    446922 8u3z:N (3.6) BS01 ATP 6.3.2.- GO:0001578 ... A4Q9E8 38658656
    446923 8u41:A (2.72) BS02 HIS N/A N/A A0A9X4Y9G9 39143299
    446924 8u41:B (2.72) BS02 HIS N/A N/A A0A9X4Y9G9 39143299
    446925 8u43:A (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    446926 8u43:B (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    446927 8u43:C (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    446928 8u43:D (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    446929 8u48:A (1.9) BS01 BMA ? GO:0004553 ... Q8A889 38879612
    446930 8u48:A (1.9) BS02 MAN ? GO:0004553 ... Q8A889 38879612
    446931 8u48:A (1.9) BS03 MAN ? GO:0004553 ... Q8A889 38879612
    446932 8u48:A (1.9) BS04 MAN ? GO:0004553 ... Q8A889 38879612
    446933 8u48:A (1.9) BS05 MAN ? GO:0004553 ... Q8A889 38879612
    446934 8u48:A (1.9) BS06 MAN ? GO:0004553 ... Q8A889 38879612
    446935 8u48:B (1.9) BS01 BMA ? GO:0004553 ... Q8A889 38879612
    446936 8u48:B (1.9) BS02 MAN ? GO:0004553 ... Q8A889 38879612
    446937 8u48:B (1.9) BS03 MAN ? GO:0004553 ... Q8A889 38879612
    446938 8u48:B (1.9) BS04 MAN ? GO:0004553 ... Q8A889 38879612
    446939 8u48:B (1.9) BS05 MAN ? GO:0004553 ... Q8A889 38879612
    446940 8u48:B (1.9) BS06 MAN ? GO:0004553 ... Q8A889 38879612
    446941 8u4a:A (1.97) BS01 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    446942 8u4a:A (1.97) BS02 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    446943 8u4d:A (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    446944 8u4d:A (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    446945 8u4d:B (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    446946 8u4d:B (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    446947 8u4d:C (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    446948 8u4d:C (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    446949 8u4d:D (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    446950 8u4d:D (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    446951 8u4f:A (2.01) BS01 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    446952 8u4f:A (2.01) BS02 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    446953 8u4f:A (2.01) BS03 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    446954 8u4f:A (2.01) BS04 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    446955 8u4j:B (3.7) BS01 MAN 2.7.10.1 N/A Q15303 38498590
    446956 8u4n:R (2.72) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    446957 8u4o:R (3.29) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    446958 8u4p:R (3.15) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    446959 8u4p:R (3.15) BS02 VH6 ? GO:0001618 ... P42212
    P61073    		 N/A
    446960 8u4q:R (3.36) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    446961 8u4r:R (3.1) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    446962 8u4s:C (3.35) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    446963 8u4s:C (3.35) BS02 D21 ? GO:0001618 ... P42212
    P61073    		 N/A
    446964 8u4s:C (3.35) BS03 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    446965 8u4s:C (3.35) BS04 D21 ? GO:0001618 ... P42212
    P61073    		 N/A
    446966 8u4s:G (3.35) BS01 D21 ? GO:0001618 ... P42212
    P61073    		 N/A
    446967 8u4s:G (3.35) BS02 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    446968 8u4s:G (3.35) BS03 D21 ? GO:0001618 ... P42212
    P61073    		 N/A
    446969 8u4s:G (3.35) BS04 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    446970 8u4s:R (3.35) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    446971 8u4s:R (3.35) BS02 D21 ? GO:0001618 ... P42212
    P61073    		 N/A
    446972 8u4s:R (3.35) BS03 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    446973 8u4s:R (3.35) BS04 D21 ? GO:0001618 ... P42212
    P61073    		 N/A
    446974 8u4t:AA (3.38) BS01 CLR ? GO:0001618 ... P61073 N/A
    446975 8u4t:AA (3.38) BS02 D21 ? GO:0001618 ... P61073 N/A
    446976 8u4t:AA (3.38) BS03 CLR ? GO:0001618 ... P61073 N/A
    446977 8u4t:I (3.38) BS01 CLR ? GO:0001618 ... P61073 N/A
    446978 8u4t:I (3.38) BS02 D21 ? GO:0001618 ... P61073 N/A
    446979 8u4t:I (3.38) BS03 CLR ? GO:0001618 ... P61073 N/A
    446980 8u4t:Q (3.38) BS01 CLR ? GO:0001618 ... P61073 N/A
    446981 8u4t:Q (3.38) BS02 D21 ? GO:0001618 ... P61073 N/A
    446982 8u4t:Q (3.38) BS03 CLR ? GO:0001618 ... P61073 N/A
    446983 8u4t:R (3.38) BS01 CLR ? GO:0001618 ... P61073 N/A
    446984 8u4t:R (3.38) BS02 D21 ? GO:0001618 ... P61073 N/A
    446985 8u4t:R (3.38) BS03 CLR ? GO:0001618 ... P61073 N/A
    446986 8u4v:A (2.99) BS01 AV0 ? GO:0004888 ... O14493 38886509
    446987 8u4v:H (2.99) BS01 AV0 N/A N/A N/A 38886509
    446988 8u4w:A (3.02) BS01 VHU 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38482564
    446989 8u4w:B (3.02) BS01 VHU 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38482564
    446990 8u4w:C (3.02) BS01 VHU 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38482564
    446991 8u4w:D (3.02) BS01 VHU 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38482564
    446992 8u4x:A (2.81) BS01 LBV N/A N/A Q885D3 39127720
    446993 8u4x:B (2.81) BS01 LBV N/A N/A Q885D3 39127720
    446994 8u4z:A (2.39) BS01 MH0 N/A GO:0004601 ... N/A 38519509
    446995 8u53:A (2.6) BS01 CPL ? GO:0000325 ... Q9C8G5 38592763
    446996 8u53:A (2.6) BS02 82T ? GO:0000325 ... Q9C8G5 38592763
    446997 8u53:B (2.6) BS01 CPL ? GO:0000325 ... Q9C8G5 38592763
    446998 8u53:B (2.6) BS02 82T ? GO:0000325 ... Q9C8G5 38592763
    446999 8u56:A (2.75) BS01 LMN N/A N/A Q7Z3F1 N/A
    447000 8u56:A (2.75) BS02 Y01 N/A N/A Q7Z3F1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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