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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    446601 8txy:A (2.1) BS01 SJ0 2.7.11.1
    2.7.11.26    		 GO:0004672 ... Q7KZI7 38147543
    446602 8txy:B (2.1) BS01 SJ0 2.7.11.1
    2.7.11.26    		 GO:0004672 ... Q7KZI7 38147543
    446603 8txz:A (3.05) BS01 A1N 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    446604 8txz:A (3.05) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    446605 8ty0:A (1.54) BS01 SIK N/A N/A P22629 N/A
    446606 8ty0:B (1.54) BS01 SIK N/A N/A P22629 N/A
    446607 8ty0:C (1.54) BS01 SIK N/A N/A P22629 N/A
    446608 8ty0:D (1.54) BS01 SIK N/A N/A P22629 N/A
    446609 8ty2:A (1.41) BS01 GDP N/A N/A P01116 N/A
    446610 8ty3:A (1.85) BS01 SJF N/A N/A P0DTD1 N/A
    446611 8ty4:A (1.85) BS01 SO0 N/A N/A P0DTD1 N/A
    446612 8ty5:A (1.85) BS01 SQ3 N/A N/A P0DTD1 N/A
    446613 8ty8:A (1.4) BS01 GDP N/A N/A P01116 N/A
    446614 8ty9:A (1.43) BS01 GDP N/A N/A P01116 N/A
    446615 8tyc:A (3.3) BS01 MAN N/A N/A P08669 N/A
    446616 8tyc:B (3.3) BS01 MAN N/A N/A P08669 N/A
    446617 8tyc:C (3.3) BS01 MAN N/A N/A P08669 N/A
    446618 8tyc:b (3.3) BS01 BMA N/A N/A P08669
    Q9WXS1    		 N/A
    446619 8tye:A (3.8) BS01 FUC N/A N/A P08669 39243373
    446620 8tye:A (3.8) BS02 MAN N/A N/A P08669 39243373
    446621 8tye:L (3.8) BS01 MAN N/A N/A N/A 39243373
    446622 8tyf:A (2.59) BS01 T0F N/A N/A A5K302 N/A
    446623 8tyg:A (1.64) BS01 SKC N/A N/A A5K302 N/A
    446624 8tyg:A (1.64) BS02 TEW N/A N/A A5K302 N/A
    446625 8tyh:A (1.83) BS01 TEW N/A N/A A5KAC3 N/A
    446626 8tyj:A (1.9) BS01 SAH 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    446627 8tym:B (3.58) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    446628 8tym:C (3.58) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    446629 8tym:c (3.58) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    446630 8tym:f (3.58) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    446631 8tyn:C (3.26) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    446632 8tyn:F (3.26) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    446633 8tyn:c (3.26) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    446634 8tyn:f (3.26) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    446635 8typ:A (1.8) BS01 SQT 3.4.21.42 GO:0004252 ... P09871 38149922
    446636 8tyq:A (2.99) BS01 T3X 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    446637 8tys:A (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    446638 8tys:C (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    446639 8tys:D (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    446640 8tys:F (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    446641 8tyv:A (1.85) BS01 I8P ? N/A Q9UBH6 N/A
    446642 8tyv:B (1.85) BS01 I8P ? N/A Q9UBH6 N/A
    446643 8tz1:A (2.54) BS01 RBV ? GO:0005337 ... F1MGR1 38418906
    446644 8tz1:A (2.54) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446645 8tz1:A (2.54) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    446646 8tz1:A (2.54) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    446647 8tz1:A (2.54) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    446648 8tz1:B (2.54) BS01 RBV ? GO:0005337 ... F1MGR1 38418906
    446649 8tz1:B (2.54) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446650 8tz1:B (2.54) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    446651 8tz1:B (2.54) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    446652 8tz1:B (2.54) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    446653 8tz1:C (2.54) BS01 RBV ? GO:0005337 ... F1MGR1 38418906
    446654 8tz1:C (2.54) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446655 8tz1:C (2.54) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    446656 8tz1:C (2.54) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    446657 8tz1:C (2.54) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    446658 8tz2:A (2.8) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    446659 8tz2:A (2.8) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446660 8tz2:B (2.8) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    446661 8tz2:B (2.8) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446662 8tz2:C (2.8) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    446663 8tz2:C (2.8) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446664 8tz3:A (2.31) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    446665 8tz3:A (2.31) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446666 8tz3:A (2.31) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    446667 8tz3:B (2.31) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    446668 8tz3:B (2.31) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446669 8tz3:B (2.31) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    446670 8tz3:C (2.31) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    446671 8tz3:C (2.31) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446672 8tz3:C (2.31) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    446673 8tz4:A (3.23) BS01 U08 ? GO:0005337 ... F1MGR1 38418906
    446674 8tz5:A (2.74) BS01 U56 ? GO:0005337 ... F1MGR1 38418906
    446675 8tz5:A (2.74) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446676 8tz5:A (2.74) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    446677 8tz5:A (2.74) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    446678 8tz5:A (2.74) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    446679 8tz5:B (2.74) BS01 U56 ? GO:0005337 ... F1MGR1 38418906
    446680 8tz5:B (2.74) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446681 8tz5:B (2.74) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    446682 8tz5:B (2.74) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    446683 8tz5:B (2.74) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    446684 8tz5:C (2.74) BS01 U56 ? GO:0005337 ... F1MGR1 38418906
    446685 8tz5:C (2.74) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446686 8tz5:C (2.74) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    446687 8tz5:C (2.74) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    446688 8tz5:C (2.74) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    446689 8tz6:A (2.69) BS01 U7I ? GO:0005337 ... F1MGR1 38418906
    446690 8tz6:A (2.69) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446691 8tz6:A (2.69) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    446692 8tz6:A (2.69) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    446693 8tz6:B (2.69) BS01 U7I ? GO:0005337 ... F1MGR1 38418906
    446694 8tz6:B (2.69) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446695 8tz6:B (2.69) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    446696 8tz6:B (2.69) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    446697 8tz6:C (2.69) BS01 U7I ? GO:0005337 ... F1MGR1 38418906
    446698 8tz6:C (2.69) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446699 8tz6:C (2.69) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    446700 8tz6:C (2.69) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    446701 8tz7:A (3.0) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    446702 8tz7:A (3.0) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446703 8tz7:B (3.0) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    446704 8tz7:B (3.0) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446705 8tz7:C (3.0) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    446706 8tz7:C (3.0) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446707 8tz8:A (3.19) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    446708 8tz8:A (3.19) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446709 8tz8:B (3.19) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    446710 8tz8:C (3.19) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    446711 8tz8:C (3.19) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446712 8tz9:A (3.67) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    446713 8tz9:B (3.67) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    446714 8tz9:C (3.67) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    446715 8tza:A (3.43) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    446716 8tza:B (3.43) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    446717 8tza:C (3.43) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    446718 8tzb:A (3.1) BS01 T3X 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    446719 8tzc:A (2.7) BS01 A1N 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    446720 8tzc:A (2.7) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    446721 8tzd:A (3.2) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    446722 8tzd:A (3.2) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    446723 8tzd:B (3.2) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    446724 8tzd:C (3.2) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    446725 8tze:A (2.9) BS01 T3X 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    446726 8tzf:A (3.4) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    446727 8tzf:A (3.4) BS02 T3X 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    446728 8tzg:A (2.7) BS01 A1N 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    446729 8tzg:A (2.7) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    446730 8tzh:A (3.9) BS01 A1N 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    446731 8tzh:A (3.9) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    446732 8tzi:A (2.7) BS01 U00 N/A N/A Q99808 N/A
    446733 8tzj:A (3.51) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    446734 8tzj:B (3.51) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    446735 8tzk:A (3.55) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    446736 8tzk:B (3.55) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    446737 8tzl:A (3.55) BS01 ADP ? GO:0005524 ... A0A085R4L6 38070498
    446738 8tzl:B (3.55) BS01 ADP ? GO:0005524 ... A0A085R4L6 38070498
    446739 8tzo:C (3.1) BS01 BMA ? GO:0005509 ... P27797 37852257
    446740 8tzo:C (3.1) BS02 MAN ? GO:0005509 ... P27797 37852257
    446741 8tzo:C (3.1) BS03 MAN ? GO:0005509 ... P27797 37852257
    446742 8tzo:C (3.1) BS04 GLC ? GO:0005509 ... P27797 37852257
    446743 8tzq:R (3.2) BS01 LDP N/A N/A P14416 39103320
    446744 8tzr:C (3.5) BS01 BMA ? GO:0005509 ... P27797 N/A
    446745 8tzr:C (3.5) BS02 MAN ? GO:0005509 ... P27797 N/A
    446746 8tzr:C (3.5) BS03 MAN ? GO:0005509 ... P27797 N/A
    446747 8tzx:A (3.15) BS03 U3I N/A N/A Q96SW2 38963839
    446748 8tzx:D (3.15) BS03 U3I N/A N/A Q96SW2 38963839
    446749 8u02:R (3.28) BS01 LDP N/A N/A P14416 39103320
    446750 8u05:A (1.62) BS01 NAP N/A N/A A0A0F7G0Y4 N/A
    446751 8u05:B (1.62) BS01 NAP N/A N/A A0A0F7G0Y4 N/A
    446752 8u06:A (1.6) BS01 NAP N/A N/A A0A0F7G0Y4 N/A
    446753 8u06:A (1.6) BS02 A7F N/A N/A A0A0F7G0Y4 N/A
    446754 8u06:A (1.6) BS03 A7F N/A N/A A0A0F7G0Y4 N/A
    446755 8u06:B (1.6) BS01 A7F N/A N/A A0A0F7G0Y4 N/A
    446756 8u06:B (1.6) BS02 NAP N/A N/A A0A0F7G0Y4 N/A
    446757 8u06:B (1.6) BS03 A7F N/A N/A A0A0F7G0Y4 N/A
    446758 8u07:A (1.63) BS01 A7F N/A N/A A0A0F7G0Y4 N/A
    446759 8u07:A (1.63) BS02 NAP N/A N/A A0A0F7G0Y4 N/A
    446760 8u07:A (1.63) BS03 A7F N/A N/A A0A0F7G0Y4 N/A
    446761 8u07:B (1.63) BS01 A7F N/A N/A A0A0F7G0Y4 N/A
    446762 8u07:B (1.63) BS02 NAP N/A N/A A0A0F7G0Y4 N/A
    446763 8u07:B (1.63) BS03 A7F N/A N/A A0A0F7G0Y4 N/A
    446764 8u09:A (1.98) BS01 HEM N/A N/A N/A N/A
    446765 8u0f:C (2.07) BS01 PUB N/A N/A Q1AH60 N/A
    446766 8u0f:L (2.07) BS01 PUB N/A N/A Q1AH60 N/A
    446767 8u0h:A (1.93) BS01 UB0 N/A N/A P17706 39152201
    446768 8u0h:B (1.93) BS01 UB0 N/A N/A P17706 39152201
    446769 8u0i:A (1.541) BS01 C2E N/A N/A Q9I7B4 N/A
    446770 8u0i:A (1.541) BS02 C2E N/A N/A Q9I7B4 N/A
    446771 8u0k:A (2.5) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    446772 8u0k:A (2.5) BS02 4LR 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    446773 8u0k:B (2.5) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    446774 8u0k:B (2.5) BS02 4LR 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    446775 8u0l:A (2.8) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    446776 8u0l:A (2.8) BS02 U4R 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    446777 8u0l:B (2.8) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    446778 8u0l:B (2.8) BS02 U4R 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    446779 8u0m:A (2.54) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    446780 8u0m:A (2.54) BS02 U5O 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    446781 8u0m:B (2.54) BS01 ATP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    446782 8u0m:B (2.54) BS02 U5O 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    446783 8u0n:A (2.5) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    446784 8u0n:A (2.5) BS02 U69 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    446785 8u0n:B (2.5) BS01 U69 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    446786 8u0n:B (2.5) BS02 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    446787 8u0p:A (1.9) BS06 DUP 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    446788 8u0q:A (1.69) BS01 FAD 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    446789 8u0q:A (1.69) BS02 U4I 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    446790 8u0q:A (1.69) BS03 U4I 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    446791 8u0q:B (1.69) BS01 U4I 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    446792 8u0q:B (1.69) BS02 U4I 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    446793 8u0q:B (1.69) BS03 FAD 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    446794 8u0r:D (2.3) BS01 PDO N/A N/A P68711 N/A
    446795 8u0v:A (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    446796 8u0v:A (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    446797 8u0v:B (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    446798 8u0v:B (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    446799 8u0v:C (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    446800 8u0v:C (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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