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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    445801 8ti1:E (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    445802 8ti1:E (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    445803 8ti1:F (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    445804 8ti1:F (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    445805 8ti1:F (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    445806 8ti1:G (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    445807 8ti1:G (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    445808 8ti1:G (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    445809 8ti1:H (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    445810 8ti1:H (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    445811 8ti1:H (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    445812 8ti2:A (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    445813 8ti2:A (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    445814 8ti2:B (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    445815 8ti2:B (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    445816 8ti2:C (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    445817 8ti2:C (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    445818 8ti2:D (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    445819 8ti2:D (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    445820 8ti2:E (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    445821 8ti2:E (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    445822 8ti2:E (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    445823 8ti2:F (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    445824 8ti2:F (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    445825 8ti2:F (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    445826 8ti2:G (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    445827 8ti2:G (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    445828 8ti2:G (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    445829 8ti2:H (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    445830 8ti2:H (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    445831 8ti2:H (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    445832 8ti3:A (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    445833 8ti3:B (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    445834 8ti3:C (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    445835 8ti3:D (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    445836 8ti3:E (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    445837 8tic:A (2.7) BS01 FKX 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    445838 8tic:B (2.7) BS01 FKX 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    445839 8tic:C (2.7) BS01 FKX 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    445840 8tic:D (2.7) BS01 FKX 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    445841 8tj4:A (1.95) BS01 SIA ? GO:0019031 ... P03441 38307019
    445842 8tj4:C (1.95) BS01 SIA ? GO:0019031 ... P03441 38307019
    445843 8tj4:E (1.95) BS01 SIA ? GO:0019031 ... P03441 38307019
    445844 8tj4:G (1.95) BS01 SIA ? GO:0019031 ... P03441 38307019
    445845 8tj6:A (2.85) BS01 SIA ? GO:0019031 ... O11283 38307019
    445846 8tj6:B (2.85) BS01 FUC ? GO:0019031 ... O11283 38307019
    445847 8tj6:C (2.85) BS01 SIA ? GO:0019031 ... O11283 38307019
    445848 8tj6:E (2.85) BS01 SIA ? GO:0019031 ... O11283 38307019
    445849 8tj6:G (2.85) BS01 SIA ? GO:0019031 ... O11283 38307019
    445850 8tj7:A (2.85) BS01 SIA ? GO:0019031 ... H9XM74 38307019
    445851 8tj8:A (2.56) BS01 SIA ? GO:0019031 ... I6SI59 38307019
    445852 8tj9:A (1.9) BS01 SIA ? GO:0019031 ... A0A0Y0S9M3 38307019
    445853 8tja:A (2.05) BS01 SIA ? GO:0019031 ... A0A4P8J8E1 38307019
    445854 8tjb:A (2.45) BS01 SIA ? GO:0019031 ... A0A1W6AW68 38307019
    445855 8tjc:A (2.2) BS02 HI8 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    445856 8tjc:B (2.2) BS02 HI8 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    445857 8tjc:C (2.2) BS02 HI8 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    445858 8tjc:D (2.2) BS02 HI8 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    445859 8tjh:A (2.0) BS01 CRU N/A N/A N/A N/A
    445860 8tjh:B (2.0) BS01 CRU N/A N/A N/A N/A
    445861 8tjj:A (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    445862 8tjj:B (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    445863 8tjj:C (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    445864 8tjj:D (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    445865 8tjk:A (1.85) BS01 SAH ? GO:0008168 ... A0A0F7G196 38042494
    445866 8tjk:B (1.85) BS01 SAH ? GO:0008168 ... A0A0F7G196 38042494
    445867 8tjl:A (2.7) BS01 HZ6 2.7.10.1 GO:0004672 ... P00533 38300264
    445868 8tjr:B (3.29) BS01 MAN N/A N/A Q2N0S6 N/A
    445869 8tjr:C (3.29) BS01 MAN N/A N/A Q2N0S6 N/A
    445870 8tjs:G (3.31) BS01 MAN N/A N/A Q2N0S6 N/A
    445871 8tjs:N (3.31) BS01 MAN N/A N/A Q2N0S6 N/A
    445872 8tjs:O (3.31) BS01 MAN N/A N/A Q2N0S6 N/A
    445873 8tk2:A (1.7) BS01 I1Y N/A N/A P51452 N/A
    445874 8tk2:B (1.7) BS01 I1Y N/A N/A P51452 N/A
    445875 8tk3:A (2.0) BS01 I2X N/A N/A P51452 N/A
    445876 8tk3:A (2.0) BS02 I2X N/A N/A P51452 N/A
    445877 8tk8:A (2.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445878 8tk8:A (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445879 8tk8:B (2.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445880 8tk8:B (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445881 8tk8:C (2.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445882 8tk8:C (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445883 8tk8:D (2.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445884 8tk8:D (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445885 8tkb:A (1.71) BS01 AMP N/A GO:0000215 ... O57899 N/A
    445886 8tkb:A (1.71) BS02 AMP N/A GO:0000215 ... O57899 N/A
    445887 8tkd:A (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445888 8tkd:A (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445889 8tkd:B (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445890 8tkd:B (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445891 8tkd:C (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445892 8tkd:C (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445893 8tkd:D (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445894 8tkd:D (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445895 8tke:A (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445896 8tke:A (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445897 8tke:B (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445898 8tke:B (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445899 8tke:C (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445900 8tke:C (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445901 8tke:D (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445902 8tke:D (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445903 8tkf:A (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445904 8tkf:A (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    445905 8tkf:A (3.2) BS05 PT5 ? GO:0000822 ... Q14573 37898605
    445906 8tkf:A (3.2) BS06 PT5 ? GO:0000822 ... Q14573 37898605
    445907 8tkf:B (3.2) BS01 PT5 ? GO:0000822 ... Q14573 37898605
    445908 8tkf:B (3.2) BS03 I3P ? GO:0000822 ... Q14573 37898605
    445909 8tkf:B (3.2) BS05 ATP ? GO:0000822 ... Q14573 37898605
    445910 8tkf:B (3.2) BS06 PT5 ? GO:0000822 ... Q14573 37898605
    445911 8tkf:C (3.2) BS01 PT5 ? GO:0000822 ... Q14573 37898605
    445912 8tkf:C (3.2) BS03 I3P ? GO:0000822 ... Q14573 37898605
    445913 8tkf:C (3.2) BS05 ATP ? GO:0000822 ... Q14573 37898605
    445914 8tkf:C (3.2) BS06 PT5 ? GO:0000822 ... Q14573 37898605
    445915 8tkf:D (3.2) BS01 PT5 ? GO:0000822 ... Q14573 37898605
    445916 8tkf:D (3.2) BS02 PT5 ? GO:0000822 ... Q14573 37898605
    445917 8tkf:D (3.2) BS04 I3P ? GO:0000822 ... Q14573 37898605
    445918 8tkf:D (3.2) BS06 ATP ? GO:0000822 ... Q14573 37898605
    445919 8tkg:A (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445920 8tkg:A (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    445921 8tkg:B (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445922 8tkg:B (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    445923 8tkg:C (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445924 8tkg:C (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    445925 8tkg:D (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445926 8tkg:D (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    445927 8tkh:A (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445928 8tkh:A (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445929 8tkh:B (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445930 8tkh:B (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445931 8tkh:C (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445932 8tkh:C (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445933 8tkh:D (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445934 8tkh:D (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445935 8tki:A (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445936 8tki:A (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445937 8tki:B (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445938 8tki:B (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445939 8tki:C (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445940 8tki:C (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445941 8tki:D (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445942 8tki:D (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    445943 8tkp:D (2.9) BS01 CLR ? GO:0005886 ... Q11069 38354260
    445944 8tl1:A (3.16) BS01 GCH ? GO:0001172 ... P03526 38503747
    445945 8tl8:A (3.2) BS01 GCH ? GO:0001172 ... P03526 38503747
    445946 8tl8:A (3.2) BS02 GCH ? GO:0001172 ... P03526 38503747
    445947 8tl8:B (3.2) BS01 GCH ? GO:0001172 ... P03526 38503747
    445948 8tl8:B (3.2) BS02 GCH ? GO:0001172 ... P03526 38503747
    445949 8tl9:A (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445950 8tl9:A (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    445951 8tl9:B (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445952 8tl9:B (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    445953 8tl9:C (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445954 8tl9:C (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    445955 8tl9:D (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445956 8tl9:D (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    445957 8tla:A (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445958 8tla:A (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    445959 8tla:B (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445960 8tla:B (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    445961 8tla:C (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445962 8tla:C (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    445963 8tla:D (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    445964 8tla:D (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    445965 8tlc:A (2.72) BS01 I6I 2.1.2.1 GO:0002082 ... P34897 38324671
    445966 8tlc:B (2.72) BS01 I6I 2.1.2.1 GO:0002082 ... P34897 38324671
    445967 8tln:E (1.6) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 1445869
    445968 8tln:E (1.6) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 1445869
    445969 8tlq:A (3.53) BS04 DCP 2.7.7.7 GO:0000166 ... P14284 38720088
    445970 8tlq:A (3.53) BS05 SF4 2.7.7.7 GO:0000166 ... P14284 38720088
    445971 8tlr:A (1.70004) BS01 GDP N/A N/A P01112 39255801
    445972 8tlr:A (1.70004) BS02 MOV N/A N/A P01112 39255801
    445973 8tls:A (1.7) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    445974 8tls:B (1.7) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    445975 8tlt:A (2.85) BS03 SF4 2.7.7.7 GO:0000166 ... P14284 38720088
    445976 8tlt:A (2.85) BS05 DCP 2.7.7.7 GO:0000166 ... P14284 38720088
    445977 8tlv:A (2.659) BS02 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    445978 8tlv:A (2.659) BS03 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    445979 8tlw:A (2.106) BS02 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    445980 8tlw:A (2.106) BS03 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    445981 8tlx:A (2.097) BS02 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    445982 8tlx:A (2.097) BS03 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    445983 8tm7:A (1.79) BS01 NCA 2.4.2.12 GO:0005125 ... P43490 38352833
    445984 8tm7:A (1.79) BS02 I7Q 2.4.2.12 GO:0005125 ... P43490 38352833
    445985 8tm7:A (1.79) BS03 NCA 2.4.2.12 GO:0005125 ... P43490 38352833
    445986 8tm7:B (1.79) BS01 NCA 2.4.2.12 GO:0005125 ... P43490 38352833
    445987 8tm7:B (1.79) BS02 NCA 2.4.2.12 GO:0005125 ... P43490 38352833
    445988 8tm7:B (1.79) BS03 I7Q 2.4.2.12 GO:0005125 ... P43490 38352833
    445989 8tmr:A (1.37) BS01 NXL 3.5.2.6 GO:0008800 ... A0A4Y5JTU1 38000656
    445990 8tmt:A (1.7) BS01 4D6 3.5.2.6 GO:0008800 ... A0A4Y5JTU1 38000656
    445991 8tn3:A (1.63) BS01 PMP ? GO:0008483 ... Q643B9 37890134
    445992 8tn3:B (1.63) BS01 PMP ? GO:0008483 ... Q643B9 37890134
    445993 8tn6:A (1.36) BS01 RPB N/A N/A N/A 38574125
    445994 8tn6:B (1.36) BS01 RPB N/A N/A N/A 38574125
    445995 8tn6:C (1.36) BS01 RPB N/A N/A N/A 38574125
    445996 8tnb:A (1.4) BS01 IQM N/A N/A N/A 38574125
    445997 8tnb:B (1.4) BS01 IQM N/A N/A N/A 38574125
    445998 8tnb:C (1.4) BS01 IQM N/A N/A N/A 38574125
    445999 8tnc:A (1.4) BS01 3JD N/A N/A N/A 38574125
    446000 8tnc:B (1.4) BS01 3JD N/A N/A N/A 38574125
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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