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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    445201 8tcz:A (2.1) BS01 ZRI 1.5.1.2 GO:0004735 ... P32322 38411104
    445202 8tcz:B (2.1) BS01 ZRI 1.5.1.2 GO:0004735 ... P32322 38411104
    445203 8td0:A (2.2) BS01 ZS5 1.5.1.2 GO:0004735 ... P32322 38411104
    445204 8td0:B (2.2) BS01 ZS5 1.5.1.2 GO:0004735 ... P32322 38411104
    445205 8td0:C (2.2) BS01 ZS5 1.5.1.2 GO:0004735 ... P32322 38411104
    445206 8td0:D (2.2) BS01 ZS5 1.5.1.2 GO:0004735 ... P32322 38411104
    445207 8td1:A (1.88) BS01 ZRZ 1.5.1.2 GO:0004735 ... P32322 38411104
    445208 8td1:A (1.88) BS02 ZRZ 1.5.1.2 GO:0004735 ... P32322 38411104
    445209 8td1:B (1.88) BS01 ZRZ 1.5.1.2 GO:0004735 ... P32322 38411104
    445210 8td1:B (1.88) BS02 ZRZ 1.5.1.2 GO:0004735 ... P32322 38411104
    445211 8td1:C (1.88) BS01 ZRZ 1.5.1.2 GO:0004735 ... P32322 38411104
    445212 8td1:C (1.88) BS02 ZRZ 1.5.1.2 GO:0004735 ... P32322 38411104
    445213 8td1:D (1.88) BS01 ZRZ 1.5.1.2 GO:0004735 ... P32322 38411104
    445214 8td1:D (1.88) BS02 ZRZ 1.5.1.2 GO:0004735 ... P32322 38411104
    445215 8td1:E (1.88) BS01 ZRZ 1.5.1.2 GO:0004735 ... P32322 38411104
    445216 8td2:A (1.65) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445217 8td2:A (1.65) BS02 ZPS N/A GO:0004735 ... P32322 39133178
    445218 8td2:B (1.65) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445219 8td2:B (1.65) BS02 ZPS N/A GO:0004735 ... P32322 39133178
    445220 8td2:C (1.65) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445221 8td2:C (1.65) BS02 ZPS N/A GO:0004735 ... P32322 39133178
    445222 8td2:D (1.65) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445223 8td2:D (1.65) BS02 ZPS N/A GO:0004735 ... P32322 39133178
    445224 8td2:E (1.65) BS01 ZPS N/A GO:0004735 ... P32322 39133178
    445225 8td3:A (1.67) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445226 8td3:A (1.67) BS02 GJM N/A GO:0004735 ... P32322 39133178
    445227 8td3:A (1.67) BS03 GJM N/A GO:0004735 ... P32322 39133178
    445228 8td3:B (1.67) BS01 GJM N/A GO:0004735 ... P32322 39133178
    445229 8td3:B (1.67) BS02 GJM N/A GO:0004735 ... P32322 39133178
    445230 8td3:B (1.67) BS03 NAI N/A GO:0004735 ... P32322 39133178
    445231 8td3:C (1.67) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445232 8td3:C (1.67) BS02 GJM N/A GO:0004735 ... P32322 39133178
    445233 8td3:C (1.67) BS03 GJM N/A GO:0004735 ... P32322 39133178
    445234 8td3:D (1.67) BS01 GJM N/A GO:0004735 ... P32322 39133178
    445235 8td3:D (1.67) BS02 GJM N/A GO:0004735 ... P32322 39133178
    445236 8td3:D (1.67) BS03 NAI N/A GO:0004735 ... P32322 39133178
    445237 8td3:E (1.67) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445238 8td3:E (1.67) BS02 GJM N/A GO:0004735 ... P32322 39133178
    445239 8td4:A (1.76) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445240 8td4:A (1.76) BS02 UJD N/A GO:0004735 ... P32322 39133178
    445241 8td4:B (1.76) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445242 8td4:B (1.76) BS02 UJD N/A GO:0004735 ... P32322 39133178
    445243 8td4:C (1.76) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445244 8td4:C (1.76) BS02 UJD N/A GO:0004735 ... P32322 39133178
    445245 8td4:C (1.76) BS03 UJD N/A GO:0004735 ... P32322 39133178
    445246 8td4:D (1.76) BS01 UJD N/A GO:0004735 ... P32322 39133178
    445247 8td4:D (1.76) BS02 NAI N/A GO:0004735 ... P32322 39133178
    445248 8td4:D (1.76) BS03 UJD N/A GO:0004735 ... P32322 39133178
    445249 8td4:E (1.76) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445250 8td4:E (1.76) BS02 UJD N/A GO:0004735 ... P32322 39133178
    445251 8td5:A (1.81) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445252 8td5:A (1.81) BS02 UJP N/A GO:0004735 ... P32322 39133178
    445253 8td5:B (1.81) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445254 8td5:B (1.81) BS02 UJP N/A GO:0004735 ... P32322 39133178
    445255 8td5:C (1.81) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445256 8td5:C (1.81) BS02 UJP N/A GO:0004735 ... P32322 39133178
    445257 8td5:D (1.81) BS01 UJP N/A GO:0004735 ... P32322 39133178
    445258 8td5:D (1.81) BS02 NAI N/A GO:0004735 ... P32322 39133178
    445259 8td5:D (1.81) BS03 UJP N/A GO:0004735 ... P32322 39133178
    445260 8td5:E (1.81) BS01 UJP N/A GO:0004735 ... P32322 39133178
    445261 8td6:A (2.08) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445262 8td6:B (2.08) BS01 MTG N/A GO:0004735 ... P32322 39133178
    445263 8td6:B (2.08) BS02 NAI N/A GO:0004735 ... P32322 39133178
    445264 8td6:C (2.08) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445265 8td6:C (2.08) BS02 MTG N/A GO:0004735 ... P32322 39133178
    445266 8td6:C (2.08) BS03 MTG N/A GO:0004735 ... P32322 39133178
    445267 8td6:D (2.08) BS01 MTG N/A GO:0004735 ... P32322 39133178
    445268 8td6:D (2.08) BS02 NAI N/A GO:0004735 ... P32322 39133178
    445269 8td6:D (2.08) BS03 MTG N/A GO:0004735 ... P32322 39133178
    445270 8td6:E (2.08) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445271 8td7:A (1.61) BS01 LHV N/A GO:0004735 ... P32322 39133178
    445272 8td7:B (1.61) BS01 LHV N/A GO:0004735 ... P32322 39133178
    445273 8td7:B (1.61) BS02 LHV N/A GO:0004735 ... P32322 39133178
    445274 8td7:C (1.61) BS01 LHV N/A GO:0004735 ... P32322 39133178
    445275 8td7:D (1.61) BS01 LHV N/A GO:0004735 ... P32322 39133178
    445276 8td7:E (1.61) BS01 LHV N/A GO:0004735 ... P32322 39133178
    445277 8td8:A (1.71) BS01 G8I N/A GO:0004735 ... P32322 39133178
    445278 8td8:A (1.71) BS02 NAI N/A GO:0004735 ... P32322 39133178
    445279 8td8:B (1.71) BS01 G8I N/A GO:0004735 ... P32322 39133178
    445280 8td8:B (1.71) BS02 NAI N/A GO:0004735 ... P32322 39133178
    445281 8td8:C (1.71) BS01 G8I N/A GO:0004735 ... P32322 39133178
    445282 8td8:C (1.71) BS02 NAI N/A GO:0004735 ... P32322 39133178
    445283 8td8:C (1.71) BS03 G8I N/A GO:0004735 ... P32322 39133178
    445284 8td8:D (1.71) BS01 G8I N/A GO:0004735 ... P32322 39133178
    445285 8td8:D (1.71) BS02 NAI N/A GO:0004735 ... P32322 39133178
    445286 8td8:E (1.71) BS01 G8I N/A GO:0004735 ... P32322 39133178
    445287 8td9:A (1.75) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445288 8td9:A (1.75) BS02 YCP N/A GO:0004735 ... P32322 39133178
    445289 8td9:A (1.75) BS03 YCP N/A GO:0004735 ... P32322 39133178
    445290 8td9:B (1.75) BS01 YCP N/A GO:0004735 ... P32322 39133178
    445291 8td9:B (1.75) BS02 NAI N/A GO:0004735 ... P32322 39133178
    445292 8td9:B (1.75) BS03 YCP N/A GO:0004735 ... P32322 39133178
    445293 8td9:C (1.75) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445294 8td9:C (1.75) BS02 YCP N/A GO:0004735 ... P32322 39133178
    445295 8td9:C (1.75) BS03 YCP N/A GO:0004735 ... P32322 39133178
    445296 8td9:D (1.75) BS01 YCP N/A GO:0004735 ... P32322 39133178
    445297 8td9:D (1.75) BS02 NAI N/A GO:0004735 ... P32322 39133178
    445298 8td9:D (1.75) BS03 YCP N/A GO:0004735 ... P32322 39133178
    445299 8td9:E (1.75) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445300 8td9:E (1.75) BS02 YCP N/A GO:0004735 ... P32322 39133178
    445301 8tdb:A (2.3) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445302 8tdb:A (2.3) BS02 GHO N/A GO:0004735 ... P32322 39133178
    445303 8tdb:B (2.3) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445304 8tdb:B (2.3) BS02 GHO N/A GO:0004735 ... P32322 39133178
    445305 8tdb:C (2.3) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445306 8tdb:C (2.3) BS02 GHO N/A GO:0004735 ... P32322 39133178
    445307 8tdb:D (2.3) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445308 8tdb:D (2.3) BS02 GHO N/A GO:0004735 ... P32322 39133178
    445309 8tdb:E (2.3) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445310 8tdb:E (2.3) BS02 GHO N/A GO:0004735 ... P32322 39133178
    445311 8tdc:A (1.8) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445312 8tdc:A (1.8) BS02 GIW N/A GO:0004735 ... P32322 39133178
    445313 8tdc:B (1.8) BS01 GIW N/A GO:0004735 ... P32322 39133178
    445314 8tdc:B (1.8) BS02 NAI N/A GO:0004735 ... P32322 39133178
    445315 8tdc:C (1.8) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445316 8tdc:C (1.8) BS02 GIW N/A GO:0004735 ... P32322 39133178
    445317 8tdc:D (1.8) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445318 8tdc:D (1.8) BS02 GIW N/A GO:0004735 ... P32322 39133178
    445319 8tdc:E (1.8) BS01 GIW N/A GO:0004735 ... P32322 39133178
    445320 8tdd:A (1.91) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445321 8tdd:A (1.91) BS02 SJU N/A GO:0004735 ... P32322 39133178
    445322 8tdd:B (1.91) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445323 8tdd:B (1.91) BS02 SJU N/A GO:0004735 ... P32322 39133178
    445324 8tdd:C (1.91) BS01 NAI N/A GO:0004735 ... P32322 39133178
    445325 8tdd:C (1.91) BS02 SJU N/A GO:0004735 ... P32322 39133178
    445326 8tdd:D (1.91) BS01 SJU N/A GO:0004735 ... P32322 39133178
    445327 8tdd:D (1.91) BS02 NAI N/A GO:0004735 ... P32322 39133178
    445328 8tde:A (1.85) BS01 GLC ? GO:0016787 ... Q8A5T1 38898276
    445329 8tdf:A (2.1) BS01 NAD ? N/A N/A 38898276
    445330 8tdf:B (2.1) BS01 NAD ? N/A N/A 38898276
    445331 8tdf:C (2.1) BS01 NAD ? N/A N/A 38898276
    445332 8tdf:D (2.1) BS01 NAD ? N/A N/A 38898276
    445333 8tdh:A (2.95) BS01 GLC N/A N/A N/A 38898276
    445334 8tdh:A (2.95) BS02 GLC N/A N/A N/A 38898276
    445335 8tdh:A (2.95) BS03 GLC N/A N/A N/A 38898276
    445336 8tdh:A (2.95) BS04 GLC N/A N/A N/A 38898276
    445337 8tdh:A (2.95) BS05 GLC N/A N/A N/A 38898276
    445338 8tdh:A (2.95) BS06 NAD N/A N/A N/A 38898276
    445339 8tdh:B (2.95) BS01 GLC N/A N/A N/A 38898276
    445340 8tdh:B (2.95) BS02 GLC N/A N/A N/A 38898276
    445341 8tdh:B (2.95) BS03 GLC N/A N/A N/A 38898276
    445342 8tdh:B (2.95) BS04 GLC N/A N/A N/A 38898276
    445343 8tdh:B (2.95) BS05 GLC N/A N/A N/A 38898276
    445344 8tdh:B (2.95) BS06 GLC N/A N/A N/A 38898276
    445345 8tdh:B (2.95) BS07 GLC N/A N/A N/A 38898276
    445346 8tdh:B (2.95) BS08 GLC N/A N/A N/A 38898276
    445347 8tdh:B (2.95) BS09 GLC N/A N/A N/A 38898276
    445348 8tdh:B (2.95) BS10 NAD N/A N/A N/A 38898276
    445349 8tdh:C (2.95) BS01 GLC N/A N/A N/A 38898276
    445350 8tdh:C (2.95) BS02 GLC N/A N/A N/A 38898276
    445351 8tdh:C (2.95) BS03 GLC N/A N/A N/A 38898276
    445352 8tdh:C (2.95) BS04 GLC N/A N/A N/A 38898276
    445353 8tdh:C (2.95) BS05 GLC N/A N/A N/A 38898276
    445354 8tdh:C (2.95) BS06 GLC N/A N/A N/A 38898276
    445355 8tdh:C (2.95) BS07 GLC N/A N/A N/A 38898276
    445356 8tdh:C (2.95) BS08 GLC N/A N/A N/A 38898276
    445357 8tdh:C (2.95) BS09 NAD N/A N/A N/A 38898276
    445358 8tdh:D (2.95) BS01 GLC N/A N/A N/A 38898276
    445359 8tdh:D (2.95) BS02 GLC N/A N/A N/A 38898276
    445360 8tdh:D (2.95) BS03 GLC N/A N/A N/A 38898276
    445361 8tdh:D (2.95) BS04 GLC N/A N/A N/A 38898276
    445362 8tdh:D (2.95) BS05 GLC N/A N/A N/A 38898276
    445363 8tdh:D (2.95) BS06 GLC N/A N/A N/A 38898276
    445364 8tdh:D (2.95) BS07 NAD N/A N/A N/A 38898276
    445365 8tdi:A (2.6) BS01 NAD N/A N/A N/A 38898276
    445366 8tdi:B (2.6) BS01 NAD N/A N/A N/A 38898276
    445367 8tdi:C (2.6) BS01 NAD N/A N/A N/A 38898276
    445368 8tdi:D (2.6) BS01 NAD N/A N/A N/A 38898276
    445369 8tdi:E (2.6) BS01 NAD N/A N/A N/A 38898276
    445370 8tdi:F (2.6) BS01 NAD N/A N/A N/A 38898276
    445371 8tdi:G (2.6) BS01 NAD N/A N/A N/A 38898276
    445372 8tdi:H (2.6) BS01 NAD N/A N/A N/A 38898276
    445373 8tdi:I (2.6) BS01 NAD N/A N/A N/A 38898276
    445374 8tdi:J (2.6) BS01 NAD N/A N/A N/A 38898276
    445375 8tdi:K (2.6) BS01 NAD N/A N/A N/A 38898276
    445376 8tdi:L (2.6) BS01 NAD N/A N/A N/A 38898276
    445377 8tdp:A (1.85) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 37939223
    445378 8tdp:A (1.85) BS02 YTT 1.14.19.70 GO:0004497 ... P9WPP7 37939223
    445379 8tdq:A (1.65) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 37939223
    445380 8tdq:A (1.65) BS02 YTT 1.14.19.70 GO:0004497 ... P9WPP7 37939223
    445381 8tdr:A (3.32) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    445382 8tdr:B (3.32) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    445383 8tdr:C (3.32) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    445384 8tdr:D (3.32) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    445385 8tdu:A (3.11) BS01 X3N 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37623743
    445386 8tdu:A (3.11) BS02 ZWE 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37623743
    445387 8tdu:C (3.11) BS01 X3N 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37623743
    445388 8tdu:C (3.11) BS02 ZWE 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37623743
    445389 8te1:A (2.48) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    445390 8te1:B (2.48) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    445391 8te1:C (2.48) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    445392 8te1:D (2.48) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    445393 8te3:A (3.2) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    445394 8te3:B (3.2) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    445395 8te3:C (3.2) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    445396 8te3:D (3.2) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    445397 8te4:A (2.65) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    445398 8te4:B (2.65) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    445399 8te4:C (2.65) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    445400 8te4:D (2.65) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 38600075
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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