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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    444801 8t5i:A (1.7) BS01 ZHF ? GO:0000122 ... P61964 N/A
    444802 8t5i:B (1.7) BS01 ZHF ? GO:0000122 ... P61964 N/A
    444803 8t5k:B (1.95) BS01 YGI ? GO:0002218 ... Q86WV6 37425806
    444804 8t5l:B (2.01) BS01 1SY ? GO:0002218 ... Q86WV6 37425806
    444805 8t5m:A (1.79) BS01 YIF ? GO:0005085 ... Q07890 38156904
    444806 8t5n:A (1.65) BS02 AMP 6.1.1.14 GO:0000166 ... P9WFV7 N/A
    444807 8t5r:A (2.12) BS01 6LH ? GO:0005085 ... Q07890 38156904
    444808 8t5s:A (2.9) BS04 ADP 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    444809 8t5u:A (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    444810 8t5u:A (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    444811 8t5u:B (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    444812 8t5u:B (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    444813 8t5u:C (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    444814 8t5u:C (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    444815 8t5u:D (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    444816 8t5u:D (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    444817 8t5u:E (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    444818 8t5u:E (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    444819 8t5u:F (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    444820 8t5u:F (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    444821 8t5u:G (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    444822 8t5u:G (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    444823 8t5v:A (1.79) BS03 E4Z N/A N/A C3W5S0 38190441
    444824 8t5w:A (1.65) BS03 E4Z 3.1.-.- N/A C3W5S0 38190441
    444825 8t5w:A (1.65) BS04 E4Z 3.1.-.- N/A C3W5S0 38190441
    444826 8t5y:A (1.44) BS01 CMP N/A GO:0003677 ... N/A 37945601
    444827 8t69:A (2.89) BS01 YHL ? GO:0001975 ... Q05940 37914936
    444828 8t6a:A (3.17) BS01 YHR ? GO:0001975 ... Q05940 37914936
    444829 8t6b:A (3.72) BS01 SRO ? GO:0001975 ... Q05940 37914936
    444830 8t6d:A (2.4) BS01 YR2 3.1.3.48 GO:0004725 ... Q06124 37774359
    444831 8t6d:B (2.4) BS01 YR2 3.1.3.48 GO:0004725 ... Q06124 37774359
    444832 8t6f:A (1.56) BS01 GLC N/A GO:0005515 ... P0AEX9
    Q07820    		 39179926
    444833 8t6f:A (1.56) BS02 GLC N/A GO:0005515 ... P0AEX9
    Q07820    		 39179926
    444834 8t6f:A (1.56) BS03 YI7 N/A GO:0005515 ... P0AEX9
    Q07820    		 39179926
    444835 8t6g:A (1.84) BS01 YT2 3.1.3.48 GO:0004725 ... Q06124 37774359
    444836 8t6g:B (1.84) BS01 YT2 3.1.3.48 GO:0004725 ... Q06124 37774359
    444837 8t6j:A (3.5) BS01 YKU ? GO:0004930 ... P41594 38632403
    444838 8t6j:B (3.5) BS01 YKU ? GO:0004930 ... P41594 38632403
    444839 8t6l:A (3.3) BS01 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    444840 8t6l:A (3.3) BS02 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    444841 8t6l:A (3.3) BS03 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    444842 8t6l:A (3.3) BS04 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    444843 8t6l:A (3.3) BS05 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    444844 8t6l:A (3.3) BS06 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    444845 8t6l:A (3.3) BS07 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    444846 8t6l:A (3.3) BS08 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    444847 8t6l:A (3.3) BS09 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    444848 8t6l:A (3.3) BS10 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    444849 8t6l:A (3.3) BS11 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    444850 8t6l:A (3.3) BS12 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    444851 8t6l:A (3.3) BS13 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    444852 8t6l:A (3.3) BS14 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    444853 8t6l:A (3.3) BS15 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    444854 8t6l:A (3.3) BS16 9Z9 ? GO:0001518 ... P15389
    P42212    		 38485923
    444855 8t6l:A (3.3) BS17 9Z9 ? GO:0001518 ... P15389
    P42212    		 38485923
    444856 8t6l:A (3.3) BS18 YIJ ? GO:0001518 ... P15389
    P42212    		 38485923
    444857 8t6l:A (3.3) BS19 YIJ ? GO:0001518 ... P15389
    P42212    		 38485923
    444858 8t6u:A (3.13) BS01 CLR ? GO:0005452 ... P02730 37679563
    444859 8t6u:A (3.13) BS02 H9F ? GO:0005452 ... P02730 37679563
    444860 8t6u:A (3.13) BS03 CLR ? GO:0005452 ... P02730 37679563
    444861 8t6u:B (3.13) BS01 CLR ? GO:0005452 ... P02730 37679563
    444862 8t6u:B (3.13) BS02 H9F ? GO:0005452 ... P02730 37679563
    444863 8t6u:B (3.13) BS03 CLR ? GO:0005452 ... P02730 37679563
    444864 8t6v:A (2.95) BS01 4DS ? GO:0005452 ... P02730 37679563
    444865 8t6v:A (2.95) BS02 Y01 ? GO:0005452 ... P02730 37679563
    444866 8t6v:A (2.95) BS03 CLR ? GO:0005452 ... P02730 37679563
    444867 8t6v:B (2.95) BS01 4DS ? GO:0005452 ... P02730 37679563
    444868 8t6v:B (2.95) BS02 CLR ? GO:0005452 ... P02730 37679563
    444869 8t6z:A (1.91) BS03 IJM 3.1.-.- GO:0003723 ... C3W5S0 38190441
    444870 8t70:B (1.892) BS03 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    444871 8t70:B (1.892) BS04 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    444872 8t70:B (1.892) BS05 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    444873 8t70:B (1.892) BS06 FII 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    444874 8t70:B (1.892) BS07 BT6 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    444875 8t71:A (1.8) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 38354232
    444876 8t71:B (1.8) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 38354232
    444877 8t72:A (1.6) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    444878 8t72:B (1.6) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    444879 8t72:C (1.6) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    444880 8t73:A (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38354232
    444881 8t73:B (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38354232
    444882 8t74:A (1.65) BS02 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    444883 8t75:A (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    444884 8t75:C (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    444885 8t75:E (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    444886 8t75:G (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    444887 8t7d:A (3.444) BS01 ZT3 N/A N/A O75874 N/A
    444888 8t7d:B (3.444) BS01 ZT3 N/A N/A O75874 N/A
    444889 8t7d:C (3.444) BS01 ZT3 N/A N/A O75874 N/A
    444890 8t7d:D (3.444) BS01 ZT3 N/A N/A O75874 N/A
    444891 8t7h:A (3.3) BS01 QUS ? GO:0004930 ... P41594 38632403
    444892 8t7h:B (3.3) BS01 QUS ? GO:0004930 ... P41594 38632403
    444893 8t7j:A (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    444894 8t7j:B (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    444895 8t7j:C (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    444896 8t7j:D (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    444897 8t7n:A (2.26) BS01 NAP N/A N/A O75874 N/A
    444898 8t7n:A (2.26) BS02 ZT3 N/A N/A O75874 N/A
    444899 8t7n:B (2.26) BS01 NAP N/A N/A O75874 N/A
    444900 8t7n:B (2.26) BS02 ZT3 N/A N/A O75874 N/A
    444901 8t7o:A (2.053) BS01 NAP N/A N/A O75874 N/A
    444902 8t7o:A (2.053) BS02 IV3 N/A N/A O75874 N/A
    444903 8t7o:B (2.053) BS01 IV3 N/A N/A O75874 N/A
    444904 8t7o:B (2.053) BS02 NAP N/A N/A O75874 N/A
    444905 8t7q:A (2.1) BS01 ZH5 3.1.3.48 GO:0004725 ... Q06124 37774359
    444906 8t7q:B (2.1) BS01 ZH5 3.1.3.48 GO:0004725 ... Q06124 37774359
    444907 8t7u:A (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    444908 8t7u:B (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    444909 8t7u:C (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    444910 8t7u:D (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    444911 8t7u:E (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    444912 8t7u:F (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    444913 8t7u:G (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    444914 8t7v:A (2.25) BS01 ZTA ? GO:0005856 ... O00522 37974623
    444915 8t7v:B (2.25) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 37974623
    444916 8t81:A (2.6) BS03 IJM 3.1.-.- GO:0003723 ... C3W5S0 38190441
    444917 8t85:A (2.38) BS02 BEF ? GO:0000156 ... P0AEV1 37949227
    444918 8t88:A (1.54) BS01 YW0 3.-.-.- GO:0016787 ... Q2FDS6 38411555
    444919 8t88:A (1.54) BS02 YW0 3.-.-.- GO:0016787 ... Q2FDS6 38411555
    444920 8t88:B (1.54) BS01 YW0 3.-.-.- GO:0016787 ... Q2FDS6 38411555
    444921 8t88:B (1.54) BS02 YW0 3.-.-.- GO:0016787 ... Q2FDS6 38411555
    444922 8t8a:A (3.4) BS01 FAD N/A GO:0004497 ... A0A177SH44 N/A
    444923 8t8a:B (3.4) BS01 FAD N/A GO:0004497 ... A0A177SH44 N/A
    444924 8t8a:C (3.4) BS01 FAD N/A GO:0004497 ... A0A177SH44 N/A
    444925 8t8a:D (3.4) BS01 FAD N/A GO:0004497 ... A0A177SH44 N/A
    444926 8t8b:1F (2.65) BS12 ARG ? GO:0003735 ... Q5SHN9 37433044
    444927 8t8b:1d (2.65) BS03 SF4 ? GO:0003723 ... P80373 37433044
    444928 8t8b:2d (2.65) BS02 SF4 ? GO:0003723 ... P80373 37433044
    444929 8t8c:1F (2.6) BS04 ARG ? GO:0003735 ... Q5SHN9 37433044
    444930 8t8c:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 37433044
    444931 8t8c:2d (2.6) BS02 SF4 ? GO:0003723 ... P80373 37433044
    444932 8t8m:A (3.0) BS01 QUS ? GO:0004930 ... P41594 38632403
    444933 8t8m:B (3.0) BS01 QUS ? GO:0004930 ... P41594 38632403
    444934 8t8n:A (2.32) BS01 074 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A P27282 37515189
    444935 8t8q:A (2.27) BS01 ZJX 3.1.3.48 GO:0004725 ... Q06124 37774359
    444936 8t8q:B (2.27) BS01 ZJX 3.1.3.48 GO:0004725 ... Q06124 37774359
    444937 8t8u:A (2.01) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    444938 8t8u:A (2.01) BS02 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    444939 8t8v:A (1.96) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    444940 8t8v:A (1.96) BS02 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    444941 8t8w:A (2.0) BS01 ATP ? GO:0000828 ... A0A3G4ZNY6 38216735
    444942 8t8x:A (2.59) BS01 ANP ? GO:0000828 ... A0A3G4ZNY6 38216735
    444943 8t8x:A (2.59) BS02 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    444944 8t8y:A (2.5) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    444945 8t8y:A (2.5) BS02 I3P ? GO:0000828 ... A0A3G4ZNY6 38216735
    444946 8t8z:A (2.6) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    444947 8t8z:A (2.6) BS02 ZNU ? GO:0000828 ... A0A3G4ZNY6 38216735
    444948 8t90:A (2.3) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    444949 8t90:A (2.3) BS02 ZNZ ? GO:0000828 ... A0A3G4ZNY6 38216735
    444950 8t91:A (2.56) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    444951 8t91:A (2.56) BS02 IHP ? GO:0000828 ... A0A3G4ZNY6 38216735
    444952 8t92:A (2.3) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    444953 8t92:A (2.3) BS02 XID ? GO:0000828 ... A0A3G4ZNY6 38216735
    444954 8t92:A (2.3) BS03 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    444955 8t93:A (1.95) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    444956 8t93:A (1.95) BS02 ZNQ ? GO:0000828 ... A0A3G4ZNY6 38216735
    444957 8t94:A (2.11) BS03 IJM 3.1.-.- GO:0003723 ... C3W5S0 38190441
    444958 8t95:A (2.61) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    444959 8t95:A (2.61) BS02 I4P ? GO:0000828 ... A0A3G4ZNY6 38216735
    444960 8t96:A (2.36) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    444961 8t96:A (2.36) BS02 K7V ? GO:0000828 ... A0A3G4ZNY6 38216735
    444962 8t96:A (2.36) BS03 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    444963 8t97:A (2.46) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    444964 8t97:A (2.46) BS02 KGN ? GO:0000828 ... A0A3G4ZNY6 38216735
    444965 8t97:A (2.46) BS03 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    444966 8t98:A (1.3) BS01 U6J 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    444967 8t99:A (1.5) BS01 ZOW 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    444968 8t9f:K (2.6) BS01 SAM 2.1.1.361
    2.1.1.362    		 GO:0042799 ... Q4FZB7 37595555
    444969 8t9g:C (6.2) BS01 SAH N/A N/A Q15910 N/A
    444970 8t9g:I (6.2) BS02 SAH N/A N/A Q15910 N/A
    444971 8t9v:A (1.945) BS01 ZJT 3.2.2.22 GO:0017148 ... P02879 38340640
    444972 8ta0:A (1.95) BS01 DQI N/A N/A A0PQG8 N/A
    444973 8ta0:A (1.95) BS02 NAP N/A N/A A0PQG8 N/A
    444974 8ta1:A (1.5) BS01 EII N/A N/A A0PQG8 N/A
    444975 8ta1:A (1.5) BS02 NAP N/A N/A A0PQG8 N/A
    444976 8ta2:A (2.74) BS01 GH6 ? GO:0005247 ... P51788 38345841
    444977 8ta2:A (2.74) BS02 CL ? GO:0005247 ... P51788 38345841
    444978 8ta2:B (2.74) BS01 GH6 ? GO:0005247 ... P51788 38345841
    444979 8ta2:B (2.74) BS02 CL ? GO:0005247 ... P51788 38345841
    444980 8tab:A (2.26) BS01 U4T 3.2.2.22 GO:0017148 ... P02879 38340640
    444981 8tad:A (2.76) BS01 ZXJ 3.2.2.22 GO:0017148 ... P02879 38340640
    444982 8tah:A (2.89) BS02 ATP ? GO:0003779 ... P61157 37898612
    444983 8tah:B (2.89) BS01 ATP ? GO:0003779 ... A7MB62 37898612
    444984 8tao:A (2.9) BS01 QUS ? GO:0004930 ... P41594 38632403
    444985 8tao:B (2.9) BS01 YKU ? GO:0004930 ... P41594 38632403
    444986 8tao:B (2.9) BS02 QUS ? GO:0004930 ... P41594 38632403
    444987 8tas:E (4.1) BS02 SAH N/A N/A Q15910 N/A
    444988 8tat:A (1.6) BS01 GFX 3.2.1.17 GO:0003796 ... A0A7S9SVX7 38357006
    444989 8tat:A (1.6) BS02 GFX 3.2.1.17 GO:0003796 ... A0A7S9SVX7 38357006
    444990 8tav:A (1.39) BS01 ZKR N/A GO:0016020 ... Q2G025 N/A
    444991 8tav:A (1.39) BS02 ZKR N/A GO:0016020 ... Q2G025 N/A
    444992 8tav:A (1.39) BS03 ZKR N/A GO:0016020 ... Q2G025 N/A
    444993 8taw:A (1.73) BS01 HEM ? GO:0004497 ... Q2IU02 37837941
    444994 8taw:A (1.73) BS02 PQS ? GO:0004497 ... Q2IU02 37837941
    444995 8tay:A (2.021) BS01 EJD ? GO:0004497 ... Q2IU02 37837941
    444996 8tay:A (2.021) BS02 HEM ? GO:0004497 ... Q2IU02 37837941
    444997 8tb5:A (2.32) BS01 ZOQ 2.7.10.2 GO:0004672 ... P29597 37823891
    444998 8tb5:B (2.32) BS01 ZOQ 2.7.10.2 GO:0004672 ... P29597 37823891
    444999 8tb6:A (1.96) BS01 ZOI 2.7.10.2 GO:0004672 ... P29597 37823891
    445000 8tb6:B (1.96) BS01 ZOI 2.7.10.2 GO:0004672 ... P29597 37823891
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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