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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    444601 8t1b:D (3.0) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444602 8t1b:D (3.0) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444603 8t1b:D (3.0) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444604 8t1b:D (3.0) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444605 8t1b:D (3.0) BS09 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444606 8t1b:D (3.0) BS10 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444607 8t1b:D (3.0) BS11 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    444608 8t1c:E (3.49) BS01 GDP 3.6.5.2 GO:0000902 ... P61586 37353478
    444609 8t1d:A (3.35) BS01 XS9 ? GO:0000122 ... Q9HBA0 37353478
    444610 8t1d:B (3.35) BS01 XS9 ? GO:0000122 ... Q9HBA0 37353478
    444611 8t1d:C (3.35) BS01 XS9 ? GO:0000122 ... Q9HBA0 37353478
    444612 8t1d:D (3.35) BS01 XS9 ? GO:0000122 ... Q9HBA0 37353478
    444613 8t1e:A (2.77) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444614 8t1e:A (2.77) BS02 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444615 8t1e:A (2.77) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444616 8t1e:A (2.77) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444617 8t1e:A (2.77) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444618 8t1e:A (2.77) BS06 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    444619 8t1e:A (2.77) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444620 8t1e:A (2.77) BS08 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    444621 8t1e:B (2.77) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444622 8t1e:B (2.77) BS02 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    444623 8t1e:B (2.77) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444624 8t1e:B (2.77) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444625 8t1e:B (2.77) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444626 8t1e:B (2.77) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444627 8t1e:B (2.77) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444628 8t1e:B (2.77) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444629 8t1e:B (2.77) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    444630 8t1e:C (2.77) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444631 8t1e:C (2.77) BS02 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    444632 8t1e:C (2.77) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444633 8t1e:C (2.77) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444634 8t1e:C (2.77) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444635 8t1e:C (2.77) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444636 8t1e:C (2.77) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444637 8t1e:C (2.77) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444638 8t1e:C (2.77) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    444639 8t1e:D (2.77) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444640 8t1e:D (2.77) BS02 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    444641 8t1e:D (2.77) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444642 8t1e:D (2.77) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444643 8t1e:D (2.77) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444644 8t1e:D (2.77) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444645 8t1e:D (2.77) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444646 8t1e:D (2.77) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    444647 8t1e:D (2.77) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    444648 8t1f:A (3.49) BS01 X7N ? GO:0000122 ... Q9HBA0 37353478
    444649 8t1f:B (3.49) BS01 X7N ? GO:0000122 ... Q9HBA0 37353478
    444650 8t1f:C (3.49) BS01 X7N ? GO:0000122 ... Q9HBA0 37353478
    444651 8t1f:D (3.49) BS01 X7N ? GO:0000122 ... Q9HBA0 37353478
    444652 8t1j:A (2.7) BS02 ARG 1.14.13.39 GO:0001666 ... P29476 37979917
    444653 8t1j:A (2.7) BS03 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    444654 8t1j:A (2.7) BS04 HEM 1.14.13.39 GO:0001666 ... P29476 37979917
    444655 8t1j:B (2.7) BS01 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    444656 8t1j:B (2.7) BS02 ARG 1.14.13.39 GO:0001666 ... P29476 37979917
    444657 8t1j:B (2.7) BS03 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    444658 8t1j:B (2.7) BS04 HEM 1.14.13.39 GO:0001666 ... P29476 37979917
    444659 8t1k:A (3.14) BS02 ARG 1.14.13.39 GO:0001666 ... P29476 37979917
    444660 8t1k:A (3.14) BS03 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    444661 8t1k:A (3.14) BS04 HEM 1.14.13.39 GO:0001666 ... P29476 37979917
    444662 8t1k:A (3.14) BS05 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    444663 8t1k:B (3.14) BS01 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    444664 8t1k:B (3.14) BS02 ARG 1.14.13.39 GO:0001666 ... P29476 37979917
    444665 8t1k:B (3.14) BS03 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    444666 8t1k:B (3.14) BS04 HEM 1.14.13.39 GO:0001666 ... P29476 37979917
    444667 8t1o:A (3.3) BS01 PIO ? GO:0005794 ... P17427 37364761
    444668 8t1p:C (2.96) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    444669 8t1p:C (2.96) BS03 AOV 7.6.2.- GO:0005524 ... O07550 37938578
    444670 8t1p:D (2.96) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    444671 8t1p:D (2.96) BS02 AOV 7.6.2.- GO:0005524 ... O07549 37938578
    444672 8t1q:A (1.7) BS01 XYX 3.1.27.- N/A Q9UKF6 37967558
    444673 8t1r:A (2.2) BS01 XZC 3.1.27.- N/A Q9UKF6 37967558
    444674 8t1s:A (2.0) BS01 SAH ? GO:0008168 ... Q8EGW3 37799586
    444675 8t1s:C (2.0) BS02 SAH ? GO:0008168 ... Q8EGW3 37799586
    444676 8t1t:A (1.55) BS01 SAM ? GO:0008168 ... Q8EGW3 37799586
    444677 8t1t:C (1.55) BS01 SAM ? GO:0008168 ... Q8EGW3 37799586
    444678 8t1u:A (2.91) BS03 SAH 2.1.1.37 GO:0008168 ... Q9M548 37926286
    444679 8t1y:A (2.14) BS01 DAN 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    444680 8t1z:A (1.93) BS01 SIA 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    444681 8t24:A (2.29) BS01 FUD 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    444682 8t26:A (1.42) BS01 SIA 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    444683 8t27:A (1.41) BS01 SIA 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    444684 8t27:A (1.41) BS02 GAL 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    444685 8t27:A (1.41) BS03 GAL 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    444686 8t27:A (1.41) BS04 GAL 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    444687 8t2g:A () BS01 SAH N/A N/A N/A N/A
    444688 8t2g:A () BS02 CFF N/A N/A N/A N/A
    444689 8t2g:B () BS01 CFF N/A N/A N/A N/A
    444690 8t2g:B () BS02 SAH N/A N/A N/A N/A
    444691 8t2h:A (1.85) BS01 XIR 2.7.11.23
    2.7.12.1    		 GO:0004672 ... Q13627 N/A
    444692 8t2h:B (1.85) BS01 XIR 2.7.11.23
    2.7.12.1    		 GO:0004672 ... Q13627 N/A
    444693 8t3k:C (3.33) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    444694 8t3k:D (3.33) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    444695 8t3l:A (3.6) BS01 8IJ ? GO:0005216 ... O35433 38698206
    444696 8t3l:B (3.6) BS01 NKN ? GO:0005216 ... O35433 38698206
    444697 8t3l:C (3.6) BS01 NKN ? GO:0005216 ... O35433 38698206
    444698 8t3l:D (3.6) BS01 8IJ ? GO:0005216 ... O35433 38698206
    444699 8t3m:A (3.5) BS01 85R ? GO:0005216 ... O35433 38698206
    444700 8t3m:B (3.5) BS01 NKN ? GO:0005216 ... O35433 38698206
    444701 8t3m:C (3.5) BS01 NKN ? GO:0005216 ... O35433 38698206
    444702 8t3m:C (3.5) BS02 NKN ? GO:0005216 ... O35433 38698206
    444703 8t3m:D (3.5) BS01 NKN ? GO:0005216 ... O35433 38698206
    444704 8t3o:R (3.06) BS01 YN9 ? GO:0004930 ... Q5NUL3 38198545
    444705 8t3o:R (3.06) BS02 2Y5 ? GO:0004930 ... Q5NUL3 38198545
    444706 8t3p:A (1.9) BS01 FAD ? GO:0000166 ... Q846W9 37805629
    444707 8t3p:B (1.9) BS01 FAD ? GO:0000166 ... Q846W9 37805629
    444708 8t3q:R (3.14) BS01 HXA ? GO:0004930 ... Q5NUL3 38198545
    444709 8t3r:A (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    444710 8t3r:A (2.99) BS02 PIO ? GO:0005452 ... P02730 N/A
    444711 8t3r:B (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    444712 8t3s:R (3.07) BS01 BUA ? GO:0004930 ... O15552 38198545
    444713 8t3s:R (3.07) BS02 CLR ? GO:0004930 ... O15552 38198545
    444714 8t3u:A (2.97) BS01 PIO ? GO:0005452 ... P02730 N/A
    444715 8t3u:A (2.97) BS02 PIO ? GO:0005452 ... P02730 N/A
    444716 8t3u:B (2.97) BS01 PIO ? GO:0005452 ... P02730 N/A
    444717 8t3u:B (2.97) BS02 PIO ? GO:0005452 ... P02730 N/A
    444718 8t3v:R (3.39) BS01 HXA ? GO:0004930 ... O14842 38198545
    444719 8t3x:A (2.73) BS03 9O7 N/A N/A D0VWU9 N/A
    444720 8t42:A (3.6) BS02 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    444721 8t42:A (3.6) BS04 G2P 3.6.5.- GO:0000226 ... P68363 38658656
    444722 8t42:B (3.6) BS02 G2P ? GO:0000226 ... P07437 38658656
    444723 8t42:E (3.6) BS01 G2P ? GO:0000226 ... P07437 38658656
    444724 8t42:F (3.6) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    444725 8t44:A (3.12) BS01 PIO ? GO:0005452 ... P02730 N/A
    444726 8t44:A (3.12) BS02 PIO ? GO:0005452 ... P02730 N/A
    444727 8t44:B (3.12) BS01 PIO ? GO:0005452 ... P02730 N/A
    444728 8t44:B (3.12) BS02 PIO ? GO:0005452 ... P02730 N/A
    444729 8t44:B (3.12) BS03 CO3 ? GO:0005452 ... P02730 N/A
    444730 8t45:A (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    444731 8t45:A (2.99) BS02 PIO ? GO:0005452 ... P02730 N/A
    444732 8t45:B (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    444733 8t47:A (3.16) BS01 PIO ? GO:0005452 ... P02730 N/A
    444734 8t47:A (3.16) BS02 PIO ? GO:0005452 ... P02730 N/A
    444735 8t47:B (3.16) BS01 PIO ? GO:0005452 ... P02730 N/A
    444736 8t47:B (3.16) BS02 PIO ? GO:0005452 ... P02730 N/A
    444737 8t4m:A (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    444738 8t4m:B (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    444739 8t4m:C (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    444740 8t4m:D (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    444741 8t4o:A (2.68) BS01 Y5C 2.1.2.1 GO:0002082 ... P34897 38324671
    444742 8t4o:A (2.68) BS02 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    444743 8t4o:A (2.68) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    444744 8t4o:B (2.68) BS01 Y5C 2.1.2.1 GO:0002082 ... P34897 38324671
    444745 8t4o:B (2.68) BS02 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    444746 8t4o:B (2.68) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    444747 8t4p:A (2.801) BS01 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    444748 8t4p:A (2.801) BS02 Y5Z 2.1.2.1 GO:0002082 ... P34897 38324671
    444749 8t4p:A (2.801) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    444750 8t4p:B (2.801) BS01 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    444751 8t4p:B (2.801) BS02 Y5Z 2.1.2.1 GO:0002082 ... P34897 38324671
    444752 8t4p:B (2.801) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    444753 8t4v:A (1.47) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38443470
    444754 8t4v:A (1.47) BS02 Y63 3.6.5.2 GO:0003924 ... P01116 38443470
    444755 8t4v:B (1.47) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38443470
    444756 8t4v:B (1.47) BS02 Y63 3.6.5.2 GO:0003924 ... P01116 38443470
    444757 8t4y:A (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    444758 8t4y:B (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    444759 8t4y:C (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    444760 8t4y:D (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    444761 8t4z:A (2.691) BS01 Y73 N/A N/A P11609 39141352
    444762 8t50:A (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    444763 8t50:B (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    444764 8t50:C (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    444765 8t50:D (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    444766 8t52:A (2.07) BS01 QD6 N/A N/A P12497 38328097
    444767 8t55:A (2.2) BS01 ZI3 ? GO:0045022 ... A4D1P6 37996079
    444768 8t55:B (2.2) BS01 ZI3 ? GO:0045022 ... A4D1P6 37996079
    444769 8t55:C (2.2) BS01 ZI3 ? GO:0045022 ... A4D1P6 37996079
    444770 8t56:A (2.8) BS02 Y01 ? GO:0005227 ... Q5XEZ5 38103547
    444771 8t56:A (2.8) BS03 LBN ? GO:0005227 ... Q5XEZ5 38103547
    444772 8t56:A (2.8) BS04 CLR ? GO:0005227 ... Q5XEZ5 38103547
    444773 8t56:A (2.8) BS05 CLR ? GO:0005227 ... Q5XEZ5 38103547
    444774 8t56:B (2.8) BS02 Y01 ? GO:0005227 ... Q5XEZ5 38103547
    444775 8t56:B (2.8) BS03 LBN ? GO:0005227 ... Q5XEZ5 38103547
    444776 8t56:B (2.8) BS04 CLR ? GO:0005227 ... Q5XEZ5 38103547
    444777 8t56:B (2.8) BS05 CLR ? GO:0005227 ... Q5XEZ5 38103547
    444778 8t56:D (2.8) BS01 CLR N/A N/A N/A 38103547
    444779 8t56:D (2.8) BS02 CLR N/A N/A N/A 38103547
    444780 8t56:E (2.8) BS02 LBN N/A N/A N/A 38103547
    444781 8t56:E (2.8) BS03 CLR N/A N/A N/A 38103547
    444782 8t56:H (2.8) BS01 CLR N/A N/A N/A 38103547
    444783 8t56:H (2.8) BS02 CLR N/A N/A N/A 38103547
    444784 8t56:I (2.8) BS02 LBN N/A N/A N/A 38103547
    444785 8t56:I (2.8) BS03 CLR N/A N/A N/A 38103547
    444786 8t57:A (2.7) BS01 CLR ? GO:0005227 ... Q8GUH7 38103547
    444787 8t57:A (2.7) BS02 CLR ? GO:0005227 ... Q8GUH7 38103547
    444788 8t57:B (2.7) BS01 CLR ? GO:0005227 ... Q8GUH7 38103547
    444789 8t57:B (2.7) BS02 CLR ? GO:0005227 ... Q8GUH7 38103547
    444790 8t5a:A (1.93) BS01 WBV N/A N/A P12497 38328097
    444791 8t5b:A (2.08) BS01 QD6 N/A N/A P12497 N/A
    444792 8t5b:A (2.08) BS03 QD6 N/A N/A P12497 N/A
    444793 8t5b:B (2.08) BS01 QD6 N/A N/A P12497 N/A
    444794 8t5b:B (2.08) BS02 QD6 N/A N/A P12497 N/A
    444795 8t5b:C (2.08) BS01 QD6 N/A N/A P12497 N/A
    444796 8t5b:D (2.08) BS01 QD6 N/A N/A P12497 N/A
    444797 8t5c:I (4.7) BS01 MAN N/A N/A N/A 38177144
    444798 8t5c:L (4.7) BS01 MAN N/A N/A N/A 38177144
    444799 8t5c:L (4.7) BS02 MAN N/A N/A N/A 38177144
    444800 8t5g:A (1.92) BS01 THA ? GO:0005085 ... Q07890 38156904
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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