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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    443201 8snb:EB (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443202 8snb:EC (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443203 8snb:ED (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443204 8snb:EE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443205 8snb:EF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443206 8snb:EG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443207 8snb:EH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443208 8snb:EI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443209 8snb:EJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443210 8snb:EK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443211 8snb:EL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443212 8snb:EM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443213 8snb:FA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443214 8snb:FB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443215 8snb:FC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443216 8snb:FD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443217 8snb:FE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443218 8snb:FF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443219 8snb:FG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443220 8snb:FH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443221 8snb:FI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443222 8snb:FJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443223 8snb:FK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443224 8snb:FL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443225 8snb:FM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443226 8snb:GA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443227 8snb:GB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443228 8snb:GC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443229 8snb:GD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443230 8snb:GD (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443231 8snb:GE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443232 8snb:GF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443233 8snb:GG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443234 8snb:GH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443235 8snb:GI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443236 8snb:GJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443237 8snb:GK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443238 8snb:GL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443239 8snb:GM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443240 8snb:HA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443241 8snb:HB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443242 8snb:HC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443243 8snb:HD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443244 8snb:HE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443245 8snb:HF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443246 8snb:HG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443247 8snb:HH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443248 8snb:HI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443249 8snb:HJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443250 8snb:HK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443251 8snb:HL (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443252 8snb:HM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443253 8snb:IA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443254 8snb:IB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443255 8snb:IC (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443256 8snb:IC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443257 8snb:ID (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443258 8snb:IE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443259 8snb:IF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443260 8snb:IG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443261 8snb:IH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443262 8snb:II (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443263 8snb:IJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443264 8snb:IJ (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443265 8snb:IK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443266 8snb:IL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443267 8snb:IM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443268 8snb:JA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443269 8snb:JB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443270 8snb:JC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443271 8snb:JD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443272 8snb:JE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443273 8snb:JF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443274 8snb:JG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443275 8snb:JH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443276 8snb:JH (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443277 8snb:JI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443278 8snb:JJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443279 8snb:JK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443280 8snb:JL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443281 8snb:JM (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443282 8snb:JM (3.3) BS03 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443283 8snb:KA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443284 8snb:KB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443285 8snb:KC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443286 8snb:KD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443287 8snb:KE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443288 8snb:KF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443289 8snb:KG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443290 8snb:KH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443291 8snb:KI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443292 8snb:KJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443293 8snb:KJ (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443294 8snb:KK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443295 8snb:KL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443296 8snb:KM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443297 8snb:LA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443298 8snb:LB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443299 8snb:LC (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443300 8snb:LC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443301 8snb:LD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443302 8snb:LE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443303 8snb:LF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443304 8snb:LG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443305 8snb:LH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443306 8snb:LI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443307 8snb:LJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443308 8snb:LK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443309 8snb:LL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443310 8snb:LM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443311 8snb:MA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443312 8snb:MB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443313 8snb:MC (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443314 8snb:MC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443315 8snb:MD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443316 8snb:ME (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443317 8snb:MF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443318 8snb:MG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443319 8snb:MH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443320 8snb:MI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443321 8snb:MJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443322 8snb:MK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443323 8snb:ML (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443324 8snb:MM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443325 8snb:NA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443326 8snb:NB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443327 8snb:NC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443328 8snb:ND (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443329 8snb:NE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443330 8snb:NF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443331 8snb:NG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443332 8snb:NH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443333 8snb:NI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443334 8snb:NJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443335 8snb:NK (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443336 8snb:NL (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443337 8snb:NM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443338 8snb:OA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443339 8snb:OB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443340 8snb:OC (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443341 8snb:OC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443342 8snb:OD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443343 8snb:OE (3.3) BS02 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443344 8snb:OF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443345 8snb:OG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443346 8snb:OH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443347 8snb:OI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443348 8snb:OJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443349 8snb:OJ (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443350 8snb:OK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443351 8snb:OL (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443352 8snb:OM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443353 8snb:PA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443354 8snb:PB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443355 8snb:PC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443356 8snb:PD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443357 8snb:PE (3.3) BS03 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443358 8snb:PF (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443359 8snb:PG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443360 8snb:PH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443361 8snb:PH (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443362 8snb:PI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443363 8snb:PJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443364 8snb:PK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443365 8snb:PL (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443366 8snb:PM (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443367 8snb:PM (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443368 8snb:QA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443369 8snb:QB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443370 8snb:QC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443371 8snb:QD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443372 8snb:QE (3.3) BS02 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443373 8snb:QF (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443374 8snb:QG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443375 8snb:QH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443376 8snb:QH (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443377 8snb:QI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443378 8snb:QJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443379 8snb:QJ (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443380 8snb:QK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443381 8snb:QL (3.3) BS02 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443382 8snb:QM (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443383 8snb:QM (3.3) BS03 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443384 8snb:RA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443385 8snb:RB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443386 8snb:RC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443387 8snb:RD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443388 8snb:RE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443389 8snb:RF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443390 8snb:RG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443391 8snb:RH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443392 8snb:RI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443393 8snb:RJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443394 8snb:RK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443395 8snb:RL (3.3) BS02 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443396 8snb:RM (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443397 8snb:SA (3.3) BS02 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443398 8snb:SB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443399 8snb:SC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443400 8snb:SD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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