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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    443001 8sip:H (1.94) BS01 NOS N/A N/A N/A N/A
    443002 8sip:L (1.94) BS01 NOS N/A N/A N/A N/A
    443003 8siq:N (2.5) BS01 FUC N/A N/A N/A N/A
    443004 8siv:A (1.759) BS01 ZXH 2.7.11.1 GO:0000077 ... O14757 37861679
    443005 8siw:A (1.877) BS01 ZXL 2.7.11.1 GO:0000077 ... O14757 37861679
    443006 8siw:B (1.877) BS01 ZXL 2.7.11.1 GO:0000077 ... O14757 37861679
    443007 8six:A (1.55) BS01 ZXP 2.7.11.1 GO:0000077 ... O14757 37861679
    443008 8sj0:A (2.55) BS05 DTP 2.7.7.86 N/A Q8C6L5 38740774
    443009 8sj0:C (2.55) BS05 DTP 2.7.7.86 N/A Q8C6L5 38740774
    443010 8sj1:A (2.81) BS05 3AT 2.7.7.86 N/A Q8C6L5 38740774
    443011 8sj1:C (2.81) BS04 3AT 2.7.7.86 N/A Q8C6L5 38740774
    443012 8sj2:A (2.23) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    443013 8sj2:A (2.23) BS05 DGT 2.7.7.86 N/A Q8C6L5 38740774
    443014 8sj2:C (2.23) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    443015 8sj2:C (2.23) BS05 DGT 2.7.7.86 N/A Q8C6L5 38740774
    443016 8sj8:A (2.5) BS02 OKR 2.7.7.86 N/A Q8N884 38740774
    443017 8sjk:A (2.22) BS01 CFF N/A N/A N/A 38958508
    443018 8sjx:A (2.5) BS01 HWP ? GO:0002088 ... Q6J8I9 N/A
    443019 8sjx:A (2.5) BS02 HWP ? GO:0002088 ... Q6J8I9 N/A
    443020 8sjx:A (2.5) BS03 HWP ? GO:0002088 ... Q6J8I9 N/A
    443021 8sjx:A (2.5) BS04 HWP ? GO:0002088 ... Q6J8I9 N/A
    443022 8sjx:A (2.5) BS05 HWP ? GO:0002088 ... Q6J8I9 N/A
    443023 8sjx:A (2.5) BS06 CLR ? GO:0002088 ... Q6J8I9 N/A
    443024 8sjy:A (2.35) BS01 HWP ? GO:0002088 ... Q6J8I9 39222068
    443025 8sjy:A (2.35) BS02 HWP ? GO:0002088 ... Q6J8I9 39222068
    443026 8sjy:A (2.35) BS03 HWP ? GO:0002088 ... Q6J8I9 39222068
    443027 8sjy:A (2.35) BS04 CLR ? GO:0002088 ... Q6J8I9 39222068
    443028 8sjy:A (2.35) BS05 CLR ? GO:0002088 ... Q6J8I9 39222068
    443029 8sjy:A (2.35) BS06 CLR ? GO:0002088 ... Q6J8I9 39222068
    443030 8sk0:A (1.51) BS01 NAD 4.2.1.46 GO:0000166 ... A0A1C5ADV9 37286037
    443031 8sk0:A (1.51) BS02 TYD 4.2.1.46 GO:0000166 ... A0A1C5ADV9 37286037
    443032 8sk0:B (1.51) BS01 NAD 4.2.1.46 GO:0000166 ... A0A1C5ADV9 37286037
    443033 8sk1:A (2.0) BS01 H73 N/A GO:0003848 ... A0A6L7HDR0 N/A
    443034 8sk1:A (2.0) BS02 H73 N/A GO:0003848 ... A0A6L7HDR0 N/A
    443035 8sk1:B (2.0) BS01 H73 N/A GO:0003848 ... A0A6L7HDR0 N/A
    443036 8sk1:B (2.0) BS02 H73 N/A GO:0003848 ... A0A6L7HDR0 N/A
    443037 8sk4:A (2.0) BS01 I3R 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37069799
    443038 8skb:A (2.58) BS01 NAD N/A GO:0047918 ... N/A 38224521
    443039 8skb:B (2.58) BS01 NAD N/A GO:0047918 ... N/A 38224521
    443040 8skb:C (2.58) BS01 NAD N/A GO:0047918 ... N/A 38224521
    443041 8skb:D (2.58) BS01 NAD N/A GO:0047918 ... N/A 38224521
    443042 8skf:A (1.8) BS01 NAD N/A GO:0008802 ... N/A N/A
    443043 8skf:B (1.8) BS01 NAD N/A GO:0008802 ... N/A N/A
    443044 8skh:A (1.882) BS01 A1W 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37069799
    443045 8ski:A (2.163) BS03 B7P 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    443046 8skl:A (1.55) BS01 V2O 3.1.3.48 GO:0004725 ... P18031 37500611
    443047 8skn:A (2.41) BS01 6I9 3.6.5.5 GO:0003924 ... O00429 37583827
    443048 8skn:B (2.41) BS01 6I9 3.6.5.5 GO:0003924 ... O00429 37583827
    443049 8sko:A (1.3) BS03 X8Z 3.5.2.6 GO:0008270 ... C7C422 37549809
    443050 8sko:B (1.3) BS03 X8Z 3.5.2.6 GO:0008270 ... C7C422 37549809
    443051 8skp:A (1.3) BS03 WAF 3.5.2.6 GO:0008270 ... C7C422 37549809
    443052 8skr:A (2.99) BS01 PLP 2.6.1.1
    2.6.1.7
    GO:0003723 ... P00505 37839702
    443053 8skr:C (2.99) BS01 PLP 2.6.1.1
    2.6.1.7
    GO:0003723 ... P00505 37839702
    443054 8skt:A (2.69) BS05 ATP 2.7.7.86 N/A Q8C6L5 38740774
    443055 8skt:C (2.69) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    443056 8sky:A (2.4) BS01 OXL ? GO:0003824 ... O06724 38047707
    443057 8sky:B (2.4) BS01 OXL ? GO:0003824 ... O06724 38047707
    443058 8sl7:A (2.07) BS01 BY3 4.1.99.1 GO:0003824 ... A0A845MXR5 37633277
    443059 8sl7:B (2.07) BS01 BY3 4.1.99.1 GO:0003824 ... A0A845MXR5 37633277
    443060 8sl7:C (2.07) BS01 BY3 4.1.99.1 GO:0003824 ... A0A845MXR5 37633277
    443061 8sl7:D (2.07) BS01 BY3 4.1.99.1 GO:0003824 ... A0A845MXR5 37633277
    443062 8sl9:A (1.4) BS01 H73 2.5.1.15
    2.7.6.3
    GO:0003848 ... Q5NGA7 N/A
    443063 8slf:A (2.9) BS01 AMP 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    443064 8slf:B (2.9) BS01 AMP 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    443065 8slg:A (1.95) BS01 G5A 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    443066 8slg:B (1.95) BS01 G5A 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    443067 8slh:A (3.05) BS01 AMP 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    443068 8slo:A (1.55) BS02 BYW 3.4.11.- GO:0006508 ... O96935 38976500
    443069 8slv:A (2.32) BS01 CYS 3.2.1.20 GO:0005975 ... P13080 38428508
    443070 8slv:A (2.32) BS02 PDO 3.2.1.20 GO:0005975 ... P13080 38428508
    443071 8slx:A (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    443072 8slx:A (3.23) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    443073 8slx:B (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    443074 8slx:C (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    443075 8slx:D (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    443076 8slx:D (3.23) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    443077 8sly:A (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    443078 8sly:A (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    443079 8sly:A (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    443080 8sly:B (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    443081 8sly:B (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    443082 8sly:B (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    443083 8sly:C (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    443084 8sly:C (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    443085 8sly:C (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    443086 8sly:D (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    443087 8sly:D (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    443088 8sly:D (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    443089 8smc:C (4.02) BS01 GDP 2.7.11.1
    3.6.5.-
    GO:0004672 ... Q5S007 38127736
    443090 8smc:C (4.02) BS02 TVT 2.7.11.1
    3.6.5.-
    GO:0004672 ... Q5S007 38127736
    443091 8smd:A (2.1) BS01 OJC ? GO:0000166 ... P0DW58 37992756
    443092 8smd:A (2.1) BS02 OJC ? GO:0000166 ... P0DW58 37992756
    443093 8smd:B (2.1) BS01 OJC ? GO:0000166 ... P0DW58 37992756
    443094 8smd:B (2.1) BS02 OJC ? GO:0000166 ... P0DW58 37992756
    443095 8smf:A (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    443096 8smf:B (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    443097 8smf:C (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    443098 8smf:D (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    443099 8smf:E (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    443100 8smf:F (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    443101 8smf:G (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    443102 8smf:H (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    443103 8smg:B (2.1) BS01 MF6 ? GO:0046872 ... B6V311 37992756
    443104 8smn:A (3.2) BS01 BDP 2.4.1.212 GO:0016020 ... P13563 N/A
    443105 8smn:A (3.2) BS02 BDP 2.4.1.212 GO:0016020 ... P13563 N/A
    443106 8smn:A (3.2) BS03 BDP 2.4.1.212 GO:0016020 ... P13563 N/A
    443107 8smp:A (3.4) BS01 UDP 2.4.1.212 GO:0016020 ... P13563 N/A
    443108 8smr:C (2.7) BS01 FES 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    443109 8smr:C (2.7) BS02 U10 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    443110 8smr:D (2.7) BS01 I7Y ? GO:0005886 ... Q9HVY5 37751552
    443111 8smr:D (2.7) BS02 HEM ? GO:0005886 ... Q9HVY5 37751552
    443112 8smr:D (2.7) BS03 HEM ? GO:0005886 ... Q9HVY5 37751552
    443113 8smr:D (2.7) BS04 U10 ? GO:0005886 ... Q9HVY5 37751552
    443114 8smr:E (2.7) BS02 HEM 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    443115 8smr:E (2.7) BS03 HEM 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    443116 8smr:F (2.7) BS02 HEC ? GO:0004129 ... Q9I3G4 37751552
    443117 8smr:G (2.7) BS01 HEC ? GO:0004129 ... Q9I3G5 37751552
    443118 8smr:G (2.7) BS02 HEC ? GO:0004129 ... Q9I3G5 37751552
    443119 8smr:I (2.7) BS01 HEM ? GO:0005886 ... Q9HVY5 37751552
    443120 8smr:I (2.7) BS02 HEM ? GO:0005886 ... Q9HVY5 37751552
    443121 8smr:I (2.7) BS03 U10 ? GO:0005886 ... Q9HVY5 37751552
    443122 8smr:I (2.7) BS04 I7Y ? GO:0005886 ... Q9HVY5 37751552
    443123 8smr:J (2.7) BS02 HEC ? GO:0009055 ... Q9HVY6 37751552
    443124 8smr:K (2.7) BS02 HEC ? GO:0005506 ... P00106 37751552
    443125 8smr:K (2.7) BS03 HEC ? GO:0005506 ... P00106 37751552
    443126 8smr:M (2.7) BS02 HEC ? GO:0009055 ... Q9HVY6 37751552
    443127 8smr:N (2.7) BS02 HEC ? GO:0005506 ... P00106 37751552
    443128 8smr:N (2.7) BS03 HEC ? GO:0005506 ... P00106 37751552
    443129 8smr:Z (2.7) BS01 FES 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    443130 8smr:Z (2.7) BS02 I7Y 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    443131 8smr:Z (2.7) BS03 U10 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    443132 8sms:A (1.93) BS01 G7U 2.3.1.41 GO:0004315 ... P0A953 37829009
    443133 8sms:B (1.93) BS01 G7U 2.3.1.41 GO:0004315 ... P0A953 37829009
    443134 8smu:A (2.45) BS01 HEM ? GO:0006091 ... P42212
    Q6NIZ1
    37729854
    443135 8smu:B (2.45) BS01 HEM ? GO:0006091 ... P42212
    Q6NIZ1
    37729854
    443136 8smu:C (2.45) BS01 HEM ? GO:0006091 ... P42212
    Q6NIZ1
    37729854
    443137 8smu:C (2.45) BS02 HEM ? GO:0006091 ... P42212
    Q6NIZ1
    37729854
    443138 8smu:D (2.45) BS01 HEM ? GO:0006091 ... P42212
    Q6NIZ1
    37729854
    443139 8snb:AA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443140 8snb:AB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443141 8snb:AC (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443142 8snb:AC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443143 8snb:AD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443144 8snb:AE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443145 8snb:AF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443146 8snb:AG (3.3) BS02 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443147 8snb:AH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443148 8snb:AH (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443149 8snb:AI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443150 8snb:AJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443151 8snb:AK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443152 8snb:AL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443153 8snb:AM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443154 8snb:BA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443155 8snb:BB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443156 8snb:BC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443157 8snb:BD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443158 8snb:BE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443159 8snb:BF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443160 8snb:BG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443161 8snb:BH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443162 8snb:BI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443163 8snb:BJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443164 8snb:BK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443165 8snb:BL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443166 8snb:BM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443167 8snb:CA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443168 8snb:CB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443169 8snb:CC (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443170 8snb:CC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443171 8snb:CD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443172 8snb:CE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443173 8snb:CF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443174 8snb:CF (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443175 8snb:CG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443176 8snb:CH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443177 8snb:CI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443178 8snb:CJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443179 8snb:CK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443180 8snb:CL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443181 8snb:CM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443182 8snb:DA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443183 8snb:DB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443184 8snb:DC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443185 8snb:DD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443186 8snb:DD (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443187 8snb:DE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443188 8snb:DF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443189 8snb:DG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443190 8snb:DH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443191 8snb:DH (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443192 8snb:DI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443193 8snb:DJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443194 8snb:DJ (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443195 8snb:DK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443196 8snb:DL (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    443197 8snb:DL (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    443198 8snb:DM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443199 8snb:EA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    443200 8snb:EB (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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