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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    442401 8sh3:C (2.8) BS07 CLR ? GO:0005886 ... I3L8V6 38184688
    442402 8sh3:C (2.8) BS08 LBN ? GO:0005886 ... I3L8V6 38184688
    442403 8sh3:C (2.8) BS09 LBN ? GO:0005886 ... I3L8V6 38184688
    442404 8sh3:D (2.8) BS01 LBN ? GO:0005886 ... I3L8V6 38184688
    442405 8sh3:D (2.8) BS02 AV0 ? GO:0005886 ... I3L8V6 38184688
    442406 8sh3:D (2.8) BS03 IOD ? GO:0005886 ... I3L8V6 38184688
    442407 8sh3:D (2.8) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    442408 8sh3:D (2.8) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    442409 8sh3:D (2.8) BS06 CLR ? GO:0005886 ... I3L8V6 38184688
    442410 8sh3:D (2.8) BS07 LBN ? GO:0005886 ... I3L8V6 38184688
    442411 8sh3:D (2.8) BS08 CLR ? GO:0005886 ... I3L8V6 38184688
    442412 8sh3:D (2.8) BS09 LBN ? GO:0005886 ... I3L8V6 38184688
    442413 8sh7:A (2.8) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 N/A
    442414 8sh7:B (2.8) BS01 GDP ? GO:0000226 ... P68371 N/A
    442415 8sh8:A (0.9) BS01 AR6 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 N/A
    442416 8sh9:A (2.7) BS01 ADP ? GO:0000242 ... P17987 37852256
    442417 8sh9:A (2.7) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442418 8sh9:B (2.7) BS01 ADP ? GO:0002199 ... P78371 37852256
    442419 8sh9:B (2.7) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442420 8sh9:D (2.7) BS01 ADP ? GO:0002199 ... P50991 37852256
    442421 8sh9:D (2.7) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442422 8sh9:E (2.7) BS01 ADP ? GO:0003730 ... P48643 37852256
    442423 8sh9:E (2.7) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442424 8sh9:G (2.7) BS01 ADP ? GO:0002199 ... P49368 37852256
    442425 8sh9:G (2.7) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442426 8sh9:H (2.7) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442427 8sh9:H (2.7) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442428 8sh9:Q (2.7) BS01 ADP ? GO:0002199 ... P50990 37852256
    442429 8sh9:Q (2.7) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442430 8sh9:Z (2.7) BS01 ADP ? GO:0003723 ... P40227 37852256
    442431 8sh9:Z (2.7) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442432 8sh9:a (2.7) BS01 ADP ? GO:0000242 ... P17987 37852256
    442433 8sh9:a (2.7) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442434 8sh9:b (2.7) BS01 ADP ? GO:0002199 ... P78371 37852256
    442435 8sh9:b (2.7) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442436 8sh9:d (2.7) BS01 ADP ? GO:0002199 ... P50991 37852256
    442437 8sh9:d (2.7) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442438 8sh9:e (2.7) BS01 ADP ? GO:0003730 ... P48643 37852256
    442439 8sh9:e (2.7) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442440 8sh9:g (2.7) BS01 ADP ? GO:0002199 ... P49368 37852256
    442441 8sh9:g (2.7) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442442 8sh9:h (2.7) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442443 8sh9:h (2.7) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442444 8sh9:q (2.7) BS01 ADP ? GO:0002199 ... P50990 37852256
    442445 8sh9:q (2.7) BS03 AF3 ? GO:0002199 ... P50990 37852256
    442446 8sh9:z (2.7) BS01 ADP ? GO:0003723 ... P40227 37852256
    442447 8sh9:z (2.7) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442448 8sha:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    442449 8sha:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442450 8sha:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    442451 8sha:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442452 8sha:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    442453 8sha:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442454 8sha:E (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    442455 8sha:E (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442456 8sha:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    442457 8sha:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442458 8sha:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442459 8sha:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442460 8sha:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    442461 8sha:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442462 8sha:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    442463 8sha:Z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442464 8sha:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    442465 8sha:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442466 8sha:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    442467 8sha:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442468 8sha:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    442469 8sha:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442470 8sha:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    442471 8sha:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442472 8sha:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    442473 8sha:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442474 8sha:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442475 8sha:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442476 8sha:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    442477 8sha:q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442478 8sha:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    442479 8sha:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442480 8shb:A (2.09) BS01 GV3 2.1.1.319 GO:0016274 ... O60678 N/A
    442481 8shc:C (3.0) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    442482 8shc:C (3.0) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    442483 8shc:C (3.0) BS03 LBN ? GO:0005886 ... I3L8V6 38184688
    442484 8shc:C (3.0) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    442485 8shc:C (3.0) BS05 LBN ? GO:0005886 ... I3L8V6 38184688
    442486 8shc:C (3.0) BS06 NFL ? GO:0005886 ... I3L8V6 38184688
    442487 8shc:C (3.0) BS07 NFL ? GO:0005886 ... I3L8V6 38184688
    442488 8shc:D (3.0) BS01 LBN ? GO:0005886 ... I3L8V6 38184688
    442489 8shc:D (3.0) BS02 NFL ? GO:0005886 ... I3L8V6 38184688
    442490 8shc:D (3.0) BS03 NFL ? GO:0005886 ... I3L8V6 38184688
    442491 8shc:D (3.0) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    442492 8shc:D (3.0) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    442493 8shc:D (3.0) BS06 LBN ? GO:0005886 ... I3L8V6 38184688
    442494 8shc:D (3.0) BS07 CLR ? GO:0005886 ... I3L8V6 38184688
    442495 8shd:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    442496 8shd:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442497 8shd:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    442498 8shd:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442499 8shd:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    442500 8shd:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442501 8shd:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    442502 8shd:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442503 8shd:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    442504 8shd:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442505 8shd:H (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442506 8shd:H (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442507 8shd:Q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    442508 8shd:Q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442509 8shd:Z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    442510 8shd:Z (2.9) BS03 AF3 ? GO:0003723 ... P40227 37852256
    442511 8shd:a (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    442512 8shd:a (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442513 8shd:b (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    442514 8shd:b (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442515 8shd:d (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    442516 8shd:d (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442517 8shd:e (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    442518 8shd:e (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442519 8shd:g (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    442520 8shd:g (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442521 8shd:h (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442522 8shd:h (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442523 8shd:q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    442524 8shd:q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442525 8shd:z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    442526 8shd:z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442527 8she:A (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    442528 8she:A (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442529 8she:B (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    442530 8she:B (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442531 8she:D (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    442532 8she:D (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442533 8she:E (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    442534 8she:E (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442535 8she:G (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    442536 8she:G (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442537 8she:H (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442538 8she:H (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442539 8she:Q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    442540 8she:Q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442541 8she:Z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    442542 8she:Z (2.8) BS03 AF3 ? GO:0003723 ... P40227 37852256
    442543 8she:a (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    442544 8she:a (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442545 8she:b (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    442546 8she:b (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442547 8she:d (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    442548 8she:d (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442549 8she:e (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    442550 8she:e (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442551 8she:g (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    442552 8she:g (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442553 8she:h (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442554 8she:h (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442555 8she:q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    442556 8she:q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442557 8she:z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    442558 8she:z (2.8) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442559 8shf:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    442560 8shf:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442561 8shf:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    442562 8shf:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442563 8shf:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    442564 8shf:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442565 8shf:E (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    442566 8shf:E (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442567 8shf:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    442568 8shf:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442569 8shf:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442570 8shf:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442571 8shf:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    442572 8shf:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442573 8shf:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    442574 8shf:Z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442575 8shf:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    442576 8shf:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442577 8shf:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    442578 8shf:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442579 8shf:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    442580 8shf:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442581 8shf:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    442582 8shf:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442583 8shf:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    442584 8shf:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442585 8shf:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442586 8shf:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442587 8shf:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    442588 8shf:q (3.0) BS03 AF3 ? GO:0002199 ... P50990 37852256
    442589 8shf:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    442590 8shf:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442591 8shg:A (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    442592 8shg:A (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442593 8shg:B (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    442594 8shg:B (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442595 8shg:D (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    442596 8shg:D (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442597 8shg:E (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    442598 8shg:E (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442599 8shg:G (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    442600 8shg:G (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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