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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    442201 8sg9:q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442202 8sg9:z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    442203 8sg9:z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442204 8sgb:A (2.80002) BS01 FO4 ? GO:0003677 ... P15813 N/A
    442205 8sgc:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    442206 8sgc:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442207 8sgc:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    442208 8sgc:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442209 8sgc:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    442210 8sgc:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442211 8sgc:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    442212 8sgc:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442213 8sgc:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    442214 8sgc:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442215 8sgc:H (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442216 8sgc:H (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442217 8sgc:Q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    442218 8sgc:Q (2.9) BS03 AF3 ? GO:0002199 ... P50990 37852256
    442219 8sgc:Z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    442220 8sgc:Z (2.9) BS03 AF3 ? GO:0003723 ... P40227 37852256
    442221 8sgc:a (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    442222 8sgc:a (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442223 8sgc:b (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    442224 8sgc:b (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442225 8sgc:d (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    442226 8sgc:d (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442227 8sgc:e (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    442228 8sgc:e (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442229 8sgc:g (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    442230 8sgc:g (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442231 8sgc:h (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442232 8sgc:h (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442233 8sgc:q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    442234 8sgc:q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442235 8sgc:z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    442236 8sgc:z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442237 8sgd:A (2.66) BS01 GDP ? GO:0000144 ... P25342 37315820
    442238 8sgd:A (2.66) BS02 GTP ? GO:0000144 ... P25342 37315820
    442239 8sgd:B (2.66) BS01 GDP ? GO:0005525 ... P32457 37315820
    442240 8sgd:B (2.66) BS02 GTP ? GO:0005525 ... P32457 37315820
    442241 8sgd:C (2.66) BS01 GDP ? GO:0000144 ... P25342 37315820
    442242 8sgd:C (2.66) BS02 GTP ? GO:0000144 ... P25342 37315820
    442243 8sgd:D (2.66) BS01 GDP ? GO:0005525 ... P32457 37315820
    442244 8sgd:D (2.66) BS02 GTP ? GO:0005525 ... P32457 37315820
    442245 8sge:A (1.509) BS01 ZWS ? N/A Q9Y2U9 38177675
    442246 8sge:B (1.509) BS01 ZWS ? N/A Q9Y2U9 38177675
    442247 8sgi:A (2.9) BS01 EKY ? GO:0005432 ... P32418 N/A
    442248 8sgk:A (3.7) BS01 LBV 2.7.13.3 GO:0000156 ... Q9RZA4 N/A
    442249 8sgk:B (3.7) BS01 LBV 2.7.13.3 GO:0000156 ... Q9RZA4 N/A
    442250 8sgl:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    442251 8sgl:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442252 8sgl:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    442253 8sgl:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442254 8sgl:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    442255 8sgl:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442256 8sgl:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    442257 8sgl:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442258 8sgl:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    442259 8sgl:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442260 8sgl:H (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442261 8sgl:H (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442262 8sgl:Q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    442263 8sgl:Q (2.9) BS03 AF3 ? GO:0002199 ... P50990 37852256
    442264 8sgl:Z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    442265 8sgl:Z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442266 8sgl:a (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    442267 8sgl:a (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442268 8sgl:b (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    442269 8sgl:b (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442270 8sgl:d (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    442271 8sgl:d (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442272 8sgl:e (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    442273 8sgl:e (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442274 8sgl:g (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    442275 8sgl:g (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442276 8sgl:h (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442277 8sgl:h (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442278 8sgl:q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    442279 8sgl:q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442280 8sgl:z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    442281 8sgl:z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442282 8sgm:A (2.5) BS01 A1AHF ? N/A P15813 N/A
    442283 8sgn:G (2.2) BS01 FUC ? N/A P03200 N/A
    442284 8sgo:A (2.65) BS01 ABU ? GO:0004888 ... P47870 37607940
    442285 8sgo:B (2.65) BS01 ABU ? GO:0004888 ... P14867 37607940
    442286 8sgo:C (2.65) BS01 ABU ? GO:0004888 ... P47870 37607940
    442287 8sgo:C (2.65) BS02 Q3G ? GO:0004888 ... P47870 37607940
    442288 8sgo:D (2.65) BS01 ABU ? GO:0004888 ... P14867 37607940
    442289 8sgo:E (2.65) BS01 MAN ? GO:0004888 ... P18507 37607940
    442290 8sgo:E (2.65) BS02 A8W ? GO:0004888 ... P18507 37607940
    442291 8sgp:A (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    442292 8sgp:A (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    442293 8sgp:B (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    442294 8sgp:B (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    442295 8sgp:C (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    442296 8sgp:C (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    442297 8sgp:D (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    442298 8sgp:D (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    442299 8sgq:A (3.7) BS01 ADP ? GO:0000242 ... P17987 37852256
    442300 8sgq:B (3.7) BS01 ADP ? GO:0002199 ... P78371 37852256
    442301 8sgq:D (3.7) BS01 ADP ? GO:0002199 ... P50991 37852256
    442302 8sgq:E (3.7) BS01 ADP ? GO:0003730 ... P48643 37852256
    442303 8sgq:G (3.7) BS01 ADP ? GO:0002199 ... P49368 37852256
    442304 8sgq:H (3.7) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442305 8sgq:Q (3.7) BS01 ADP ? GO:0002199 ... P50990 37852256
    442306 8sgq:Z (3.7) BS01 ADP ? GO:0003723 ... P40227 37852256
    442307 8sgq:a (3.7) BS01 ADP ? GO:0000242 ... P17987 37852256
    442308 8sgq:b (3.7) BS01 ADP ? GO:0002199 ... P78371 37852256
    442309 8sgq:d (3.7) BS01 ADP ? GO:0002199 ... P50991 37852256
    442310 8sgq:e (3.7) BS01 ADP ? GO:0003730 ... P48643 37852256
    442311 8sgq:g (3.7) BS01 ADP ? GO:0002199 ... P49368 37852256
    442312 8sgq:h (3.7) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442313 8sgq:q (3.7) BS01 ADP ? GO:0002199 ... P50990 37852256
    442314 8sgq:z (3.7) BS01 ADP ? GO:0003723 ... P40227 37852256
    442315 8sgr:A (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    442316 8sgr:A (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    442317 8sgr:B (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    442318 8sgr:B (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    442319 8sgr:C (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    442320 8sgr:C (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    442321 8sgr:D (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    442322 8sgr:D (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    442323 8sgs:A (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    442324 8sgs:A (3.15) BS02 COA 1.3.8.1 GO:0003995 ... P16219 37839702
    442325 8sgs:A (3.15) BS03 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    442326 8sgs:B (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    442327 8sgs:B (3.15) BS02 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    442328 8sgs:B (3.15) BS03 COA 1.3.8.1 GO:0003995 ... P16219 37839702
    442329 8sgs:C (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    442330 8sgs:C (3.15) BS02 COA 1.3.8.1 GO:0003995 ... P16219 37839702
    442331 8sgs:C (3.15) BS03 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    442332 8sgs:D (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    442333 8sgs:D (3.15) BS02 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    442334 8sgs:D (3.15) BS03 COA 1.3.8.1 GO:0003995 ... P16219 37839702
    442335 8sgv:A (2.58) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 37839702
    442336 8sgv:A (2.58) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 37839702
    442337 8sgv:B (2.58) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 37839702
    442338 8sgv:B (2.58) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 37839702
    442339 8sgv:C (2.58) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 37839702
    442340 8sgv:C (2.58) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 37839702
    442341 8sgv:D (2.58) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 37839702
    442342 8sgv:D (2.58) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 37839702
    442343 8sgw:C (2.5) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    442344 8sgw:C (2.5) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    442345 8sgw:C (2.5) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    442346 8sgw:C (2.5) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    442347 8sgw:C (2.5) BS05 LBN ? GO:0005886 ... I3L8V6 38184688
    442348 8sgw:C (2.5) BS06 LBN ? GO:0005886 ... I3L8V6 38184688
    442349 8sgw:C (2.5) BS07 LBN ? GO:0005886 ... I3L8V6 38184688
    442350 8sgw:C (2.5) BS08 LBN ? GO:0005886 ... I3L8V6 38184688
    442351 8sgw:C (2.5) BS09 CL ? GO:0005886 ... I3L8V6 38184688
    442352 8sgw:C (2.5) BS10 AV0 ? GO:0005886 ... I3L8V6 38184688
    442353 8sgw:C (2.5) BS11 LBN ? GO:0005886 ... I3L8V6 38184688
    442354 8sgw:D (2.5) BS01 LBN ? GO:0005886 ... I3L8V6 38184688
    442355 8sgw:D (2.5) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    442356 8sgw:D (2.5) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    442357 8sgw:D (2.5) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    442358 8sgw:D (2.5) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    442359 8sgw:D (2.5) BS06 LBN ? GO:0005886 ... I3L8V6 38184688
    442360 8sgw:D (2.5) BS07 LBN ? GO:0005886 ... I3L8V6 38184688
    442361 8sgw:D (2.5) BS08 LBN ? GO:0005886 ... I3L8V6 38184688
    442362 8sgw:D (2.5) BS09 LBN ? GO:0005886 ... I3L8V6 38184688
    442363 8sgw:D (2.5) BS10 CL ? GO:0005886 ... I3L8V6 38184688
    442364 8sgw:D (2.5) BS11 AV0 ? GO:0005886 ... I3L8V6 38184688
    442365 8sgx:C (10.3) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    442366 8sgx:E (10.3) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    442367 8sgx:F (10.3) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    442368 8sgx:G (10.3) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    442369 8sgx:H (10.3) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    442370 8sgx:S (10.3) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    442371 8sgx:V (10.3) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    442372 8sgx:X (10.3) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    442373 8sgx:Z (10.3) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    442374 8sgy:B (8.62) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    442375 8sgy:C (8.62) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    442376 8sgy:D (8.62) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    442377 8sgy:E (8.62) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    442378 8sgy:G (8.62) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    442379 8sgy:S (8.62) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    442380 8sgy:V (8.62) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    442381 8sgy:Y (8.62) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    442382 8sgy:Z (8.62) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    442383 8sgz:B (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    442384 8sgz:C (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    442385 8sgz:D (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    442386 8sgz:E (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    442387 8sgz:F (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    442388 8sgz:G (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    442389 8sgz:H (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    442390 8sgz:S (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    442391 8sgz:V (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    442392 8sgz:X (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    442393 8sgz:Y (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    442394 8sgz:Z (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    442395 8sh3:C (2.8) BS01 AV0 ? GO:0005886 ... I3L8V6 38184688
    442396 8sh3:C (2.8) BS02 IOD ? GO:0005886 ... I3L8V6 38184688
    442397 8sh3:C (2.8) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    442398 8sh3:C (2.8) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    442399 8sh3:C (2.8) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    442400 8sh3:C (2.8) BS06 LBN ? GO:0005886 ... I3L8V6 38184688
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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