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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    442001 8sf7:UI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    442002 8sf7:UJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    442003 8sf7:UJ (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    442004 8sf7:UK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    442005 8sf7:UL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    442006 8sf7:UL (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    442007 8sf7:UM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    442008 8sf7:UN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    442009 8sf7:VA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    442010 8sf7:VB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    442011 8sf7:VC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    442012 8sf7:VD (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    442013 8sf7:VD (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    442014 8sf7:VE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    442015 8sf7:VF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    442016 8sf7:VG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    442017 8sf7:VH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    442018 8sf7:VI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    442019 8sf7:VJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    442020 8sf7:VK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    442021 8sf7:VL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    442022 8sf7:VM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    442023 8sf7:VN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    442024 8sf7:WA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    442025 8sf7:WB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    442026 8sf7:WC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    442027 8sf7:WD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    442028 8sf7:WE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    442029 8sf7:WF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    442030 8sf7:WG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    442031 8sf7:WH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    442032 8sf7:WI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    442033 8sf7:WJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    442034 8sf7:WK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    442035 8sf7:WL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    442036 8sf7:WM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    442037 8sf7:WN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    442038 8sf8:A (1.7) BS02 ZWG 2.7.11.11 GO:0001669 ... P00517 38330278
    442039 8sfe:A (3.36) BS01 ADP ? GO:0000242 ... P17987 37852256
    442040 8sfe:B (3.36) BS01 ADP ? GO:0002199 ... P78371 37852256
    442041 8sfe:D (3.36) BS01 ADP ? GO:0002199 ... P50991 37852256
    442042 8sfe:E (3.36) BS01 ADP ? GO:0003730 ... P48643 37852256
    442043 8sfe:G (3.36) BS01 ADP ? GO:0002199 ... P49368 37852256
    442044 8sfe:H (3.36) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442045 8sfe:Q (3.36) BS01 ADP ? GO:0002199 ... P50990 37852256
    442046 8sfe:Z (3.36) BS01 ADP ? GO:0003723 ... P40227 37852256
    442047 8sfe:a (3.36) BS01 ADP ? GO:0000242 ... P17987 37852256
    442048 8sfe:b (3.36) BS01 ADP ? GO:0002199 ... P78371 37852256
    442049 8sfe:d (3.36) BS01 ADP ? GO:0002199 ... P50991 37852256
    442050 8sfe:e (3.36) BS01 ADP ? GO:0003730 ... P48643 37852256
    442051 8sfe:g (3.36) BS01 ADP ? GO:0002199 ... P49368 37852256
    442052 8sfe:h (3.36) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442053 8sfe:q (3.36) BS01 ADP ? GO:0002199 ... P50990 37852256
    442054 8sfe:z (3.36) BS01 ADP ? GO:0003723 ... P40227 37852256
    442055 8sff:A (3.2) BS01 ADP ? GO:0000242 ... P17987 37852256
    442056 8sff:A (3.2) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442057 8sff:B (3.2) BS01 ADP ? GO:0002199 ... P78371 37852256
    442058 8sff:B (3.2) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442059 8sff:D (3.2) BS01 ADP ? GO:0002199 ... P50991 37852256
    442060 8sff:D (3.2) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442061 8sff:E (3.2) BS01 ADP ? GO:0003730 ... P48643 37852256
    442062 8sff:E (3.2) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442063 8sff:G (3.2) BS01 ADP ? GO:0002199 ... P49368 37852256
    442064 8sff:G (3.2) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442065 8sff:H (3.2) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442066 8sff:H (3.2) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442067 8sff:Q (3.2) BS01 ADP ? GO:0002199 ... P50990 37852256
    442068 8sff:Q (3.2) BS03 AF3 ? GO:0002199 ... P50990 37852256
    442069 8sff:Z (3.2) BS01 ADP ? GO:0003723 ... P40227 37852256
    442070 8sff:Z (3.2) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442071 8sff:a (3.2) BS01 ADP ? GO:0000242 ... P17987 37852256
    442072 8sff:a (3.2) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442073 8sff:b (3.2) BS01 ADP ? GO:0002199 ... P78371 37852256
    442074 8sff:b (3.2) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442075 8sff:d (3.2) BS01 ADP ? GO:0002199 ... P50991 37852256
    442076 8sff:d (3.2) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442077 8sff:e (3.2) BS01 ADP ? GO:0003730 ... P48643 37852256
    442078 8sff:e (3.2) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442079 8sff:g (3.2) BS01 ADP ? GO:0002199 ... P49368 37852256
    442080 8sff:g (3.2) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442081 8sff:h (3.2) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442082 8sff:h (3.2) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442083 8sff:q (3.2) BS01 ADP ? GO:0002199 ... P50990 37852256
    442084 8sff:q (3.2) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442085 8sff:z (3.2) BS01 ADP ? GO:0003723 ... P40227 37852256
    442086 8sff:z (3.2) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442087 8sft:A (2.75) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    442088 8sft:A (2.75) BS02 KMP ? GO:0000166 ... T1KUK4 N/A
    442089 8sft:B (2.75) BS01 KMP ? GO:0000166 ... T1KUK4 N/A
    442090 8sft:B (2.75) BS02 UDP ? GO:0000166 ... T1KUK4 N/A
    442091 8sft:C (2.75) BS01 KMP ? GO:0000166 ... T1KUK4 N/A
    442092 8sft:C (2.75) BS02 UDP ? GO:0000166 ... T1KUK4 N/A
    442093 8sft:D (2.75) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    442094 8sfu:A (1.8) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    442095 8sfu:A (1.8) BS02 ZWN ? GO:0000166 ... T1KUK4 N/A
    442096 8sfu:B (1.8) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    442097 8sfu:B (1.8) BS02 ZWN ? GO:0000166 ... T1KUK4 N/A
    442098 8sfw:A (2.75) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    442099 8sfw:A (2.75) BS02 QUE ? GO:0000166 ... T1KUK4 N/A
    442100 8sfy:A (2.35) BS01 UPG ? GO:0000166 ... T1KUK4 N/A
    442101 8sg0:A (1.25) BS01 NAD N/A GO:0047918 ... N/A 38224521
    442102 8sg0:A (1.25) BS02 GDD N/A GO:0047918 ... N/A 38224521
    442103 8sg0:A (1.25) BS03 GDC N/A GO:0047918 ... N/A 38224521
    442104 8sg0:B (1.25) BS01 NAD N/A GO:0047918 ... N/A 38224521
    442105 8sg0:B (1.25) BS02 GDD N/A GO:0047918 ... N/A 38224521
    442106 8sg0:B (1.25) BS03 GDC N/A GO:0047918 ... N/A 38224521
    442107 8sg1:R (2.94) BS02 CLR ? GO:0004930 ... Q99788 38055679
    442108 8sg5:A (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    442109 8sg5:A (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442110 8sg5:A (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442111 8sg5:A (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442112 8sg5:B (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    442113 8sg5:B (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442114 8sg5:B (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442115 8sg5:B (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442116 8sg5:C (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    442117 8sg5:C (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442118 8sg5:C (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442119 8sg5:C (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442120 8sg5:D (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    442121 8sg5:D (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442122 8sg5:D (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442123 8sg5:D (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442124 8sg5:E (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    442125 8sg5:E (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442126 8sg5:E (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442127 8sg5:E (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442128 8sg5:F (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    442129 8sg5:F (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442130 8sg5:F (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442131 8sg5:F (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442132 8sg5:G (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    442133 8sg5:G (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442134 8sg5:G (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442135 8sg5:G (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442136 8sg5:H (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    442137 8sg5:H (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442138 8sg5:H (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442139 8sg5:H (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    442140 8sg8:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    442141 8sg8:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442142 8sg8:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    442143 8sg8:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442144 8sg8:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    442145 8sg8:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442146 8sg8:E (3.0) BS02 ADP ? GO:0003730 ... P48643 37852256
    442147 8sg8:E (3.0) BS03 AF3 ? GO:0003730 ... P48643 37852256
    442148 8sg8:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    442149 8sg8:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442150 8sg8:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442151 8sg8:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442152 8sg8:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    442153 8sg8:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442154 8sg8:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    442155 8sg8:Z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442156 8sg8:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    442157 8sg8:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442158 8sg8:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    442159 8sg8:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442160 8sg8:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    442161 8sg8:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442162 8sg8:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    442163 8sg8:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442164 8sg8:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    442165 8sg8:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442166 8sg8:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442167 8sg8:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442168 8sg8:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    442169 8sg8:q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442170 8sg8:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    442171 8sg8:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    442172 8sg9:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    442173 8sg9:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442174 8sg9:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    442175 8sg9:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442176 8sg9:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    442177 8sg9:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442178 8sg9:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    442179 8sg9:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442180 8sg9:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    442181 8sg9:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442182 8sg9:H (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442183 8sg9:H (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442184 8sg9:Q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    442185 8sg9:Q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    442186 8sg9:Z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    442187 8sg9:Z (2.9) BS03 AF3 ? GO:0003723 ... P40227 37852256
    442188 8sg9:a (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    442189 8sg9:a (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    442190 8sg9:b (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    442191 8sg9:b (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    442192 8sg9:d (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    442193 8sg9:d (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    442194 8sg9:e (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    442195 8sg9:e (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    442196 8sg9:g (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    442197 8sg9:g (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    442198 8sg9:h (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    442199 8sg9:h (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    442200 8sg9:q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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