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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    441801 8sf7:HL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441802 8sf7:HM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441803 8sf7:HN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441804 8sf7:IA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441805 8sf7:IB (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    441806 8sf7:IB (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    441807 8sf7:IC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441808 8sf7:ID (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    441809 8sf7:ID (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    441810 8sf7:IE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441811 8sf7:IF (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    441812 8sf7:IF (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    441813 8sf7:IG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441814 8sf7:IH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441815 8sf7:II (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441816 8sf7:IJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441817 8sf7:IK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441818 8sf7:IL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441819 8sf7:IM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441820 8sf7:IN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441821 8sf7:JA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441822 8sf7:JB (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    441823 8sf7:JB (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    441824 8sf7:JC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441825 8sf7:JD (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    441826 8sf7:JD (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    441827 8sf7:JE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441828 8sf7:JF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441829 8sf7:JG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441830 8sf7:JH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441831 8sf7:JI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441832 8sf7:JJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441833 8sf7:JK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441834 8sf7:JL (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    441835 8sf7:JL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    441836 8sf7:JM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441837 8sf7:JN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441838 8sf7:KA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441839 8sf7:KB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441840 8sf7:KC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441841 8sf7:KD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441842 8sf7:KE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441843 8sf7:KF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441844 8sf7:KG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441845 8sf7:KH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441846 8sf7:KI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441847 8sf7:KJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441848 8sf7:KK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441849 8sf7:KL (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    441850 8sf7:KL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    441851 8sf7:KM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441852 8sf7:KN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441853 8sf7:LA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441854 8sf7:LB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441855 8sf7:LC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441856 8sf7:LD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441857 8sf7:LE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441858 8sf7:LF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441859 8sf7:LG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441860 8sf7:LH (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    441861 8sf7:LI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441862 8sf7:LJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441863 8sf7:LK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441864 8sf7:LL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441865 8sf7:LM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441866 8sf7:LN (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    441867 8sf7:LN (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    441868 8sf7:MA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441869 8sf7:MB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441870 8sf7:MC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441871 8sf7:MD (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    441872 8sf7:MD (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    441873 8sf7:ME (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441874 8sf7:MF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441875 8sf7:MG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441876 8sf7:MH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441877 8sf7:MI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441878 8sf7:MJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441879 8sf7:MK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441880 8sf7:ML (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441881 8sf7:MM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441882 8sf7:MN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441883 8sf7:NA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441884 8sf7:NB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441885 8sf7:NC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441886 8sf7:ND (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    441887 8sf7:ND (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    441888 8sf7:NE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441889 8sf7:NF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441890 8sf7:NG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441891 8sf7:NH (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    441892 8sf7:NH (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    441893 8sf7:NI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441894 8sf7:NJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441895 8sf7:NK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441896 8sf7:NL (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    441897 8sf7:NL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    441898 8sf7:NM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441899 8sf7:NN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441900 8sf7:OA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441901 8sf7:OB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441902 8sf7:OC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441903 8sf7:OD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441904 8sf7:OE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441905 8sf7:OF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441906 8sf7:OG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441907 8sf7:OH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441908 8sf7:OI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441909 8sf7:OJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441910 8sf7:OK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441911 8sf7:OL (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    441912 8sf7:OL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    441913 8sf7:OM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441914 8sf7:ON (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441915 8sf7:PA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441916 8sf7:PA (4.1) BS02 GDP 3.6.5.- GO:0000226 ... P41351 38598282
    441917 8sf7:PB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441918 8sf7:PC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441919 8sf7:PD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441920 8sf7:PE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441921 8sf7:PF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441922 8sf7:PG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441923 8sf7:PH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441924 8sf7:PI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441925 8sf7:PJ (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    441926 8sf7:PJ (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    441927 8sf7:PK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441928 8sf7:PL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441929 8sf7:PM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441930 8sf7:PN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441931 8sf7:QA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441932 8sf7:QB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441933 8sf7:QB (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    441934 8sf7:QC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441935 8sf7:QD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441936 8sf7:QE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441937 8sf7:QF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441938 8sf7:QF (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    441939 8sf7:QG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441940 8sf7:QH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441941 8sf7:QH (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    441942 8sf7:QI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441943 8sf7:QJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441944 8sf7:QK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441945 8sf7:QL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441946 8sf7:QM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441947 8sf7:QN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441948 8sf7:RA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441949 8sf7:RB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441950 8sf7:RC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441951 8sf7:RD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441952 8sf7:RE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441953 8sf7:RF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441954 8sf7:RG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441955 8sf7:RH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441956 8sf7:RI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441957 8sf7:RJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441958 8sf7:RK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441959 8sf7:RL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441960 8sf7:RL (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    441961 8sf7:RM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441962 8sf7:RN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441963 8sf7:SA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441964 8sf7:SB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441965 8sf7:SB (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    441966 8sf7:SC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441967 8sf7:SD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441968 8sf7:SE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441969 8sf7:SF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441970 8sf7:SG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441971 8sf7:SH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441972 8sf7:SI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441973 8sf7:SJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441974 8sf7:SK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441975 8sf7:SL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441976 8sf7:SL (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    441977 8sf7:SM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441978 8sf7:SN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441979 8sf7:TA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441980 8sf7:TB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441981 8sf7:TC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441982 8sf7:TD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441983 8sf7:TE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441984 8sf7:TF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441985 8sf7:TG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441986 8sf7:TH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441987 8sf7:TI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441988 8sf7:TJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441989 8sf7:TK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441990 8sf7:TL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441991 8sf7:TM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441992 8sf7:TN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441993 8sf7:UA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441994 8sf7:UB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441995 8sf7:UC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441996 8sf7:UD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441997 8sf7:UE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    441998 8sf7:UF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    441999 8sf7:UG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    442000 8sf7:UH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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