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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    440601 8rh8:B (2.66) BS02 ABU N/A N/A P24046 N/A
    440602 8rh8:C (2.66) BS01 ABU N/A N/A P24046 N/A
    440603 8rh8:C (2.66) BS02 ABU N/A N/A P24046 N/A
    440604 8rh8:D (2.66) BS01 ABU N/A N/A P24046 N/A
    440605 8rh8:D (2.66) BS02 ABU N/A N/A P24046 N/A
    440606 8rh8:E (2.66) BS01 ABU N/A N/A P24046 N/A
    440607 8rh8:E (2.66) BS02 ABU N/A N/A P24046 N/A
    440608 8rh9:B (3.21) BS01 A8W N/A N/A P24046 N/A
    440609 8rhe:A (1.95) BS01 BLG 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    440610 8rhe:B (1.95) BS01 BLG 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    440611 8rhf:A (1.95) BS01 BLG 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    440612 8rhf:B (1.95) BS01 BLG 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    440613 8rhg:A (3.01) BS01 ABU N/A N/A P24046 N/A
    440614 8rhg:A (3.01) BS02 A8W N/A N/A P24046 N/A
    440615 8rhg:B (3.01) BS01 ABU N/A N/A P24046 N/A
    440616 8rhg:C (3.01) BS01 ABU N/A N/A P24046 N/A
    440617 8rhg:C (3.01) BS02 ABU N/A N/A P24046 N/A
    440618 8rhg:D (3.01) BS01 ABU N/A N/A P24046 N/A
    440619 8rhg:D (3.01) BS02 ABU N/A N/A P24046 N/A
    440620 8rhg:E (3.01) BS01 ABU N/A N/A P24046 N/A
    440621 8rhg:E (3.01) BS02 ABU N/A N/A P24046 N/A
    440622 8rhi:A (1.98) BS01 BLG 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    440623 8rhi:B (1.98) BS02 BLG 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    440624 8rhr:A (1.42) BS02 BB4 3.5.1.88 GO:0005515 ... P0A6K3 38574272
    440625 8ri0:A (1.95) BS01 SAM 2.1.1.228 N/A E4THH1 N/A
    440626 8ri0:B (1.95) BS01 SAM 2.1.1.228 N/A E4THH1 N/A
    440627 8ri2:A (2.8) BS01 A1H02 3.6.4.- N/A Q96P20 38175811
    440628 8ri2:A (2.8) BS02 ADP 3.6.4.- N/A Q96P20 38175811
    440629 8rij:A (1.96) BS06 A1H07 3.4.24.65 GO:0004222 ... P39900 38348661
    440630 8riv:A (2.78) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38487227
    440631 8riv:A (2.78) BS03 A1H01 3.6.5.- GO:0000226 ... P81947 38487227
    440632 8riv:B (2.78) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    440633 8riv:B (2.78) BS02 A1H01 ? GO:0000226 ... Q6B856 38487227
    440634 8riv:C (2.78) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38487227
    440635 8riv:D (2.78) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    440636 8riv:D (2.78) BS02 A1H01 ? GO:0000226 ... Q6B856 38487227
    440637 8riv:F (2.78) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38487227
    440638 8riw:A (2.57) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38487227
    440639 8riw:B (2.57) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    440640 8riw:B (2.57) BS02 A1H00 ? GO:0000226 ... Q6B856 38487227
    440641 8riw:C (2.57) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38487227
    440642 8riw:D (2.57) BS01 GDP ? GO:0000226 ... Q6B856 38487227
    440643 8riw:D (2.57) BS02 A1H00 ? GO:0000226 ... Q6B856 38487227
    440644 8riw:F (2.57) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38487227
    440645 8riy:AAA (2.288) BS01 W0O 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    440646 8riy:AAA (2.288) BS02 W0O 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    440647 8riy:BBB (2.288) BS01 W0O 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    440648 8riy:BBB (2.288) BS02 W0O 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    440649 8rj4:A (2.11) BS01 ADP N/A GO:0000287 ... P69441 39121211
    440650 8rj4:A (2.11) BS02 ADP N/A GO:0000287 ... P69441 39121211
    440651 8rj4:B (2.11) BS01 ADP N/A GO:0000287 ... P69441 39121211
    440652 8rj4:B (2.11) BS02 ADP N/A GO:0000287 ... P69441 39121211
    440653 8rj4:C (2.11) BS01 ADP N/A GO:0000287 ... P69441 39121211
    440654 8rj4:C (2.11) BS02 ADP N/A GO:0000287 ... P69441 39121211
    440655 8rj4:D (2.11) BS01 ADP N/A GO:0000287 ... P69441 39121211
    440656 8rj4:D (2.11) BS02 ADP N/A GO:0000287 ... P69441 39121211
    440657 8rj6:A (1.9) BS01 ATP N/A GO:0000287 ... P69441 39121211
    440658 8rj6:A (1.9) BS02 ADP N/A GO:0000287 ... P69441 39121211
    440659 8rj6:A (1.9) BS03 AMP N/A GO:0000287 ... P69441 39121211
    440660 8rj6:B (1.9) BS01 ADP N/A GO:0000287 ... P69441 39121211
    440661 8rj6:B (1.9) BS02 AMP N/A GO:0000287 ... P69441 39121211
    440662 8rj9:A (1.59) BS01 ADP N/A GO:0000287 ... P69441 39121211
    440663 8rj9:A (1.59) BS02 ADP N/A GO:0000287 ... P69441 39121211
    440664 8rj9:B (1.59) BS01 ADP N/A GO:0000287 ... P69441 39121211
    440665 8rj9:B (1.59) BS02 ADP N/A GO:0000287 ... P69441 39121211
    440666 8rjf:A (3.1) BS01 ADP N/A N/A A0A0H3CDS2 39103374
    440667 8rjf:B (3.1) BS01 ADP N/A N/A A0A0H3CDS2 39103374
    440668 8rjf:C (3.1) BS01 ADP N/A N/A A0A0H3CDS2 39103374
    440669 8rjf:D (3.1) BS01 ADP N/A N/A A0A0H3CDS2 39103374
    440670 8rjf:E (3.1) BS01 ADP N/A N/A A0A0H3CDS2 39103374
    440671 8rjf:F (3.1) BS01 ADP N/A N/A A0A0H3CDS2 39103374
    440672 8rjv:A (1.91) BS01 A1H1J 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 38753594
    440673 8rjy:A (1.97) BS01 A1H1K 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 38753594
    440674 8rjz:A (1.7) BS01 A1H1I 2.7.7.50
    3.4.19.12
    3.4.22.69    		 N/A P0DTD1 38753594
    440675 8rjz:B (1.7) BS01 A1H1I 2.7.7.50
    3.4.19.12
    3.4.22.69    		 N/A P0DTD1 38753594
    440676 8rkd:A (3.8) BS01 ANP N/A N/A A0A0H3CDS2 39103374
    440677 8rkd:C (3.8) BS01 ADP N/A N/A A0A0H3CDS2 39103374
    440678 8rkd:D (3.8) BS01 ANP N/A N/A A0A0H3CDS2 39103374
    440679 8rkd:F (3.8) BS01 ADP N/A N/A A0A0H3CDS2 39103374
    440680 8rke:B (2.7) BS01 MAN ? N/A Q05996 38490181
    440681 8rke:B (2.7) BS02 MAN ? N/A Q05996 38490181
    440682 8rkh:A (1.9) BS01 MAN ? N/A P20239 38490181
    440683 8rkq:A (2.6) BS01 9SZ 1.2.1.88 GO:0003842 ... P30038 38675584
    440684 8rkq:D (2.6) BS01 9SZ 1.2.1.88 GO:0003842 ... P30038 38675584
    440685 8rkr:A (1.2) BS01 A1H1O 1.2.1.88 GO:0003842 ... P30038 38675584
    440686 8rku:D (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    440687 8rku:E (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    440688 8rku:E (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440689 8rku:F (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    440690 8rku:F (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440691 8rku:G (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    440692 8rku:G (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440693 8rku:H (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440694 8rku:H (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    440695 8rku:I (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440696 8rku:I (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    440697 8rku:J (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    440698 8rku:J (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440699 8rku:K (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    440700 8rku:K (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440701 8rku:L (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    440702 8rku:L (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440703 8rku:M (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440704 8rku:M (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    440705 8rku:N (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440706 8rku:N (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    440707 8rku:O (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440708 8rku:O (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    440709 8rku:P (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440710 8rku:P (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    440711 8rku:Q (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    440712 8rlk:A (2.0) BS01 MER N/A N/A A0A1J0J3U4 39097051
    440713 8rlk:B (2.0) BS01 MER N/A N/A A0A1J0J3U4 39097051
    440714 8rlk:C (2.0) BS01 MER N/A N/A A0A1J0J3U4 39097051
    440715 8rlk:D (2.0) BS01 MER N/A N/A A0A1J0J3U4 39097051
    440716 8rln:A (2.43) BS01 CLR N/A GO:0042597 ... P0ABE7
    P29274    		 38751633
    440717 8rln:A (2.43) BS02 CLR N/A GO:0042597 ... P0ABE7
    P29274    		 38751633
    440718 8rln:A (2.43) BS03 CLR N/A GO:0042597 ... P0ABE7
    P29274    		 38751633
    440719 8rln:A (2.43) BS04 A1H1S N/A GO:0042597 ... P0ABE7
    P29274    		 38751633
    440720 8rmj:A (2.79) BS01 MAN N/A N/A A1ZAF5 39042673
    440721 8rmj:A (2.79) BS02 GU4 N/A N/A A1ZAF5 39042673
    440722 8rmj:A (2.79) BS03 YYJ N/A N/A A1ZAF5 39042673
    440723 8rmj:A (2.79) BS04 YYJ N/A N/A A1ZAF5 39042673
    440724 8ro0:A (2.9) BS05 IHP N/A N/A P34369 38925148
    440725 8ro0:C (2.9) BS02 GTP N/A N/A Q23463 38925148
    440726 8ro0:J (2.9) BS02 IHP N/A N/A O16376 38925148
    440727 8ro1:A (3.0) BS05 IHP N/A N/A P34369 38925148
    440728 8ro1:C (3.0) BS02 GTP N/A N/A Q23463 38925148
    440729 8ro1:J (3.0) BS02 IHP N/A N/A O16376 38925148
    440730 8ro2:A (3.5) BS05 IHP N/A N/A Q6P2Q9 38925148
    440731 8ro2:C (3.5) BS01 GTP N/A N/A Q15029 38925148
    440732 8roa:A (2.4355) BS01 ADP N/A N/A Q14683 39240714
    440733 8roa:C (2.4355) BS01 ADP N/A N/A Q14683 39240714
    440734 8rob:A (2.5019) BS02 AGS N/A N/A Q14683 39240714
    440735 8roe:A (1.36) BS01 ADP N/A N/A Q14683 39240714
    440736 8rof:A (1.65) BS01 ADP N/A N/A Q14683 39240714
    440737 8rog:A (1.94) BS02 AGS N/A N/A Q14683 39240714
    440738 8roi:A (2.45) BS01 ADP N/A N/A Q9UQE7 39240714
    440739 8roj:A (3.0) BS01 ADP N/A N/A Q9UQE7 39240714
    440740 8rok:A (2.25) BS01 AGS N/A N/A Q9UQE7 39240714
    440741 8rok:A (2.25) BS02 AGS N/A N/A Q9UQE7 39240714
    440742 8rok:C (2.25) BS01 AGS N/A N/A Q9UQE7 39240714
    440743 8rok:C (2.25) BS02 AGS N/A N/A Q9UQE7 39240714
    440744 8rol:A (3.11) BS01 AGS N/A N/A Q9UQE7 39240714
    440745 8rom:A (1.69) BS01 FAD 2.7.7.2 GO:0003824 ... Q8NFF5 38688286
    440746 8rox:A (3.3) BS01 A1H17 ? GO:0000209 ... Q66K64 38513086
    440747 8roy:A (3.1) BS01 A1H18 ? GO:0000209 ... Q66K64 38513086
    440748 8rph:A (2.96) BS01 FAD N/A N/A N/A 38874074
    440749 8rph:A (2.96) BS03 A1H2A N/A N/A N/A 38874074
    440750 8rph:B (2.96) BS01 FAD N/A N/A N/A 38874074
    440751 8rph:B (2.96) BS03 A1H2A N/A N/A N/A 38874074
    440752 8rph:C (2.96) BS01 FAD N/A N/A N/A 38874074
    440753 8rph:C (2.96) BS03 A1H2A N/A N/A N/A 38874074
    440754 8rph:C (2.96) BS04 A1H2A N/A N/A N/A 38874074
    440755 8rph:D (2.96) BS01 A1H2A N/A N/A N/A 38874074
    440756 8rph:D (2.96) BS02 FAD N/A N/A N/A 38874074
    440757 8rph:D (2.96) BS04 A1H2A N/A N/A N/A 38874074
    440758 8rph:E (2.96) BS01 FAD N/A N/A N/A 38874074
    440759 8rph:E (2.96) BS03 A1H2A N/A N/A N/A 38874074
    440760 8rph:F (2.96) BS01 FAD N/A N/A N/A 38874074
    440761 8rph:F (2.96) BS03 A1H2A N/A N/A N/A 38874074
    440762 8rpi:A (2.71) BS01 FAD N/A N/A N/A 38874074
    440763 8rpi:A (2.71) BS03 TDL N/A N/A N/A 38874074
    440764 8rpi:A (2.71) BS04 TDL N/A N/A N/A 38874074
    440765 8rpi:B (2.71) BS01 TDL N/A N/A N/A 38874074
    440766 8rpi:B (2.71) BS02 FAD N/A N/A N/A 38874074
    440767 8rpi:B (2.71) BS04 TDL N/A N/A N/A 38874074
    440768 8rpi:C (2.71) BS01 FAD N/A N/A N/A 38874074
    440769 8rpi:C (2.71) BS03 TDL N/A N/A N/A 38874074
    440770 8rpi:C (2.71) BS04 TDL N/A N/A N/A 38874074
    440771 8rpi:D (2.71) BS01 FAD N/A N/A N/A 38874074
    440772 8rpi:D (2.71) BS03 TDL N/A N/A N/A 38874074
    440773 8rpi:E (2.71) BS01 FAD N/A N/A N/A 38874074
    440774 8rpi:E (2.71) BS03 TDL N/A N/A N/A 38874074
    440775 8rpi:E (2.71) BS04 TDL N/A N/A N/A 38874074
    440776 8rpi:F (2.71) BS01 FAD N/A N/A N/A 38874074
    440777 8rpi:F (2.71) BS03 TDL N/A N/A N/A 38874074
    440778 8rpj:A (1.9) BS01 TPP N/A N/A N/A 38874074
    440779 8rpj:A (1.9) BS02 FAD N/A N/A N/A 38874074
    440780 8rpj:A (1.9) BS04 TPP N/A N/A N/A 38874074
    440781 8rpj:B (1.9) BS01 TPP N/A N/A N/A 38874074
    440782 8rpj:B (1.9) BS02 TPP N/A N/A N/A 38874074
    440783 8rpj:B (1.9) BS03 FAD N/A N/A N/A 38874074
    440784 8rpj:C (1.9) BS01 TPP N/A N/A N/A 38874074
    440785 8rpj:C (1.9) BS02 FAD N/A N/A N/A 38874074
    440786 8rpj:C (1.9) BS04 TPP N/A N/A N/A 38874074
    440787 8rpj:D (1.9) BS01 TPP N/A N/A N/A 38874074
    440788 8rpj:D (1.9) BS02 FAD N/A N/A N/A 38874074
    440789 8rpj:D (1.9) BS04 TPP N/A N/A N/A 38874074
    440790 8rpj:E (1.9) BS01 TPP N/A N/A N/A 38874074
    440791 8rpj:E (1.9) BS02 TPP N/A N/A N/A 38874074
    440792 8rpj:E (1.9) BS03 FAD N/A N/A N/A 38874074
    440793 8rpj:F (1.9) BS01 TPP N/A N/A N/A 38874074
    440794 8rpj:F (1.9) BS02 TPP N/A N/A N/A 38874074
    440795 8rpj:F (1.9) BS03 FAD N/A N/A N/A 38874074
    440796 8rpl:A (2.37) BS01 6R9 N/A GO:0003987 ... A0A535FEC2 39019872
    440797 8rpl:B (2.37) BS01 6R9 N/A GO:0003987 ... A0A535FEC2 39019872
    440798 8rpl:C (2.37) BS01 6R9 N/A GO:0003987 ... A0A535FEC2 39019872
    440799 8rpl:D (2.37) BS01 6R9 N/A GO:0003987 ... A0A535FEC2 39019872
    440800 8rpo:A (1.791) BS01 A1H2C N/A N/A Q16548 38894895
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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