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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    440201 8rbq:C (3.32) BS03 SF4 N/A GO:0005886 ... C1DMA6 38890433
    440202 8rbq:D (3.32) BS01 RBF N/A GO:0005886 ... C1DMA5 38890433
    440203 8rbq:E (3.32) BS01 FES N/A GO:0005886 ... Q9F5Y1 38890433
    440204 8rbq:G (3.32) BS01 FMN N/A GO:0005886 ... C1DMA4 38890433
    440205 8rc0:C (3.2) BS01 GTP ? GO:0000398 ... Q15029 38467877
    440206 8rc1:A (3.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38431715
    440207 8rc1:B (3.7) BS01 GDP ? GO:0000226 ... P02554 38431715
    440208 8rc1:C (3.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38431715
    440209 8rc1:D (3.7) BS01 GDP ? GO:0000226 ... P02554 38431715
    440210 8rc8:A (2.005) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    440211 8rc8:A (2.005) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    440212 8rc8:A (2.005) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    440213 8rc8:B (2.005) BS01 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    440214 8rc8:B (2.005) BS02 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    440215 8rc8:B (2.005) BS03 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    440216 8rc9:A (2.06) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    440217 8rc9:A (2.06) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    440218 8rc9:A (2.06) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    440219 8rc9:A (2.06) BS04 OXY N/A GO:0005515 ... Q72EJ1 39148770
    440220 8rc9:B (2.06) BS01 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    440221 8rc9:B (2.06) BS02 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    440222 8rc9:B (2.06) BS03 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    440223 8rca:A (1.664) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    440224 8rca:A (1.664) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    440225 8rca:A (1.664) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    440226 8rca:B (1.664) BS01 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    440227 8rca:B (1.664) BS02 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    440228 8rca:B (1.664) BS03 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    440229 8rcb:A (2.11) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    440230 8rcb:A (2.11) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    440231 8rcb:A (2.11) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    440232 8rcb:A (2.11) BS04 OXY N/A GO:0005515 ... Q72EJ1 39148770
    440233 8rcb:B (2.11) BS01 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    440234 8rcb:B (2.11) BS02 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    440235 8rcb:B (2.11) BS03 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    440236 8rcc:A (2.301) BS01 MGD N/A GO:0005515 ... Q72EJ1 39148770
    440237 8rcc:A (2.301) BS02 MGD N/A GO:0005515 ... Q72EJ1 39148770
    440238 8rcc:A (2.301) BS03 SF4 N/A GO:0005515 ... Q72EJ1 39148770
    440239 8rcc:B (2.301) BS01 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    440240 8rcc:B (2.301) BS02 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    440241 8rcc:B (2.301) BS03 SF4 N/A GO:0046872 ... Q72EJ0 39148770
    440242 8rcd:A (3.2) BS02 ATP N/A N/A Q06609 39178838
    440243 8rcd:A (3.2) BS05 ATP N/A N/A Q06609 39178838
    440244 8rcd:B (3.2) BS02 ATP N/A N/A Q06609 39178838
    440245 8rcd:B (3.2) BS05 ATP N/A N/A Q06609 39178838
    440246 8rcd:C (3.2) BS02 ATP N/A N/A Q06609 39178838
    440247 8rcd:C (3.2) BS05 ATP N/A N/A Q06609 39178838
    440248 8rcd:D (3.2) BS02 ATP N/A N/A Q06609 39178838
    440249 8rcd:D (3.2) BS05 ATP N/A N/A Q06609 39178838
    440250 8rcd:E (3.2) BS02 ATP N/A N/A Q06609 39178838
    440251 8rcd:E (3.2) BS05 ATP N/A N/A Q06609 39178838
    440252 8rcd:F (3.2) BS02 ATP N/A N/A Q06609 39178838
    440253 8rcd:F (3.2) BS05 ATP N/A N/A Q06609 39178838
    440254 8rcd:G (3.2) BS02 ATP N/A N/A Q06609 39178838
    440255 8rcd:G (3.2) BS05 ATP N/A N/A Q06609 39178838
    440256 8rcd:H (3.2) BS02 ATP N/A N/A Q06609 39178838
    440257 8rcf:A (3.4) BS02 ATP N/A N/A Q06609 39178838
    440258 8rcf:A (3.4) BS04 ATP N/A N/A Q06609 39178838
    440259 8rcf:B (3.4) BS03 ATP N/A N/A Q06609 39178838
    440260 8rcf:B (3.4) BS05 ATP N/A N/A Q06609 39178838
    440261 8rcf:C (3.4) BS03 ATP N/A N/A Q06609 39178838
    440262 8rcf:C (3.4) BS05 ATP N/A N/A Q06609 39178838
    440263 8rcf:D (3.4) BS03 ATP N/A N/A Q06609 39178838
    440264 8rcf:D (3.4) BS05 ATP N/A N/A Q06609 39178838
    440265 8rcf:E (3.4) BS02 ATP N/A N/A Q06609 39178838
    440266 8rcf:E (3.4) BS04 ATP N/A N/A Q06609 39178838
    440267 8rcf:F (3.4) BS03 ATP N/A N/A Q06609 39178838
    440268 8rcf:F (3.4) BS05 ATP N/A N/A Q06609 39178838
    440269 8rcf:G (3.4) BS02 ATP N/A N/A Q06609 39178838
    440270 8rcf:G (3.4) BS05 ATP N/A N/A Q06609 39178838
    440271 8rcf:H (3.4) BS02 ATP N/A N/A Q06609 39178838
    440272 8rcg:A (2.005) BS01 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 38699971
    440273 8rcg:A (2.005) BS02 MGD 1.2.1.2 GO:0005515 ... Q72EJ1 38699971
    440274 8rcg:A (2.005) BS03 SF4 1.2.1.2 GO:0005515 ... Q72EJ1 38699971
    440275 8rcg:B (2.005) BS01 SF4 ? GO:0046872 ... Q72EJ0 38699971
    440276 8rcg:B (2.005) BS02 SF4 ? GO:0046872 ... Q72EJ0 38699971
    440277 8rcg:B (2.005) BS03 SF4 ? GO:0046872 ... Q72EJ0 38699971
    440278 8rch:A (4.0) BS01 ANP N/A N/A P42345 N/A
    440279 8rch:B (4.0) BS01 ANP N/A N/A P42345 N/A
    440280 8rck:B (3.4) BS01 ANP N/A N/A P42345 N/A
    440281 8rcn:B (3.1) BS01 ANP N/A N/A P42345 N/A
    440282 8rco:A (1.9) BS01 MYR N/A N/A P02768 38782206
    440283 8rco:A (1.9) BS02 MYR N/A N/A P02768 38782206
    440284 8rco:A (1.9) BS03 MYR N/A N/A P02768 38782206
    440285 8rco:A (1.9) BS04 MYR N/A N/A P02768 38782206
    440286 8rco:A (1.9) BS05 MYR N/A N/A P02768 38782206
    440287 8rco:A (1.9) BS06 MYR N/A N/A P02768 38782206
    440288 8rco:A (1.9) BS07 GOR N/A N/A P02768 38782206
    440289 8rco:A (1.9) BS08 GOR N/A N/A P02768 38782206
    440290 8rco:B (1.9) BS01 MYR N/A N/A P02768 38782206
    440291 8rco:B (1.9) BS02 MYR N/A N/A P02768 38782206
    440292 8rco:B (1.9) BS03 MYR N/A N/A P02768 38782206
    440293 8rco:B (1.9) BS04 MYR N/A N/A P02768 38782206
    440294 8rco:B (1.9) BS05 MYR N/A N/A P02768 38782206
    440295 8rco:B (1.9) BS06 GOR N/A N/A P02768 38782206
    440296 8rco:B (1.9) BS07 GOR N/A N/A P02768 38782206
    440297 8rcw:A (1.692) BS01 YQF ? N/A P9WMJ3 38548139
    440298 8rcw:B (1.692) BS01 YQF ? N/A P9WMJ3 38548139
    440299 8rd0:C (1.765) BS01 51X N/A N/A Q7Z6Z7 39048679
    440300 8rd0:D (1.765) BS01 51X N/A N/A Q7Z6Z7 39048679
    440301 8rd1:A (1.896) BS01 YP2 N/A N/A Q7Z6Z7 39048679
    440302 8rd1:C (1.896) BS01 YP2 N/A N/A Q7Z6Z7 39048679
    440303 8rd1:D (1.896) BS01 YP2 N/A N/A Q7Z6Z7 39048679
    440304 8rd5:A (1.5) BS01 6NT N/A N/A P23360 39261644
    440305 8rd5:B (1.5) BS01 6NT N/A N/A P23360 39261644
    440306 8rd7:D (1.31) BS01 AR6 N/A N/A Q7Z6Z7 39048679
    440307 8rda:H (2.29) BS01 A1H1A N/A N/A N/A 38799664
    440308 8rdf:H (2.74) BS01 A1H09 N/A N/A N/A 38799664
    440309 8rdj:L (2.62) BS01 SAH N/A N/A N/A 38428394
    440310 8rdk:A (2.0) BS02 YQT 2.7.11.1 GO:0004672 ... Q8TF76 39067440
    440311 8rdp:A (1.76) BS02 A1HZ7 ? GO:0046872 ... A4TVL0 38552426
    440312 8rdp:B (1.76) BS02 A1HZ7 ? GO:0046872 ... A4TVL0 38552426
    440313 8rdp:C (1.76) BS02 A1HZ7 ? GO:0046872 ... A4TVL0 38552426
    440314 8rdq:A (2.03) BS02 YQO ? GO:0046872 ... A4TVL0 38552426
    440315 8rdq:B (2.03) BS02 YQO ? GO:0046872 ... A4TVL0 38552426
    440316 8rdr:A (1.58) BS02 A1HZ3 ? GO:0046872 ... A4TVL0 38552426
    440317 8rdr:B (1.58) BS02 A1HZ3 ? GO:0046872 ... A4TVL0 38552426
    440318 8rdr:C (1.58) BS02 A1HZ3 ? GO:0046872 ... A4TVL0 38552426
    440319 8rds:A (2.0) BS02 A1HZ6 ? GO:0046872 ... A4TVL0 38552426
    440320 8rds:B (2.0) BS02 A1HZ6 ? GO:0046872 ... A4TVL0 38552426
    440321 8rdt:A (1.95) BS02 A1HZ2 ? GO:0046872 ... A4TVL0 38552426
    440322 8rdt:B (1.95) BS02 A1HZ2 ? GO:0046872 ... A4TVL0 38552426
    440323 8rdu:D (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440324 8rdu:E (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440325 8rdu:E (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    440326 8rdu:F (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    440327 8rdu:F (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440328 8rdu:G (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    440329 8rdu:G (2.3) BS04 ATP N/A N/A A0A8J0PCL3 38834066
    440330 8rdu:H (2.3) BS04 ATP N/A N/A A0A8J0PCL3 38834066
    440331 8rdu:H (2.3) BS05 ATP N/A N/A A0A8J0PCL3 38834066
    440332 8rdu:I (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440333 8rdu:I (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    440334 8rdu:J (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440335 8rdu:J (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    440336 8rdu:K (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    440337 8rdu:K (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440338 8rdu:L (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    440339 8rdu:L (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    440340 8rdu:M (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    440341 8rdu:M (2.3) BS04 ATP N/A N/A A0A8J0PCL3 38834066
    440342 8rdu:N (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    440343 8rdu:N (2.3) BS04 ATP N/A N/A A0A8J0PCL3 38834066
    440344 8rdu:O (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    440345 8rdu:O (2.3) BS04 ATP N/A N/A A0A8J0PCL3 38834066
    440346 8rdu:P (2.3) BS04 ATP N/A N/A A0A8J0PCL3 38834066
    440347 8rdu:P (2.3) BS05 ATP N/A N/A A0A8J0PCL3 38834066
    440348 8rdu:Q (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    440349 8rdw:H (2.74) BS02 GDP ? GO:0003746 ... A0A0M4U5B4 38355796
    440350 8rdx:B (3.67) BS02 A1HZ4 2.5.1.59 GO:0003824 ... P53610 38537632
    440351 8rdx:D (3.67) BS02 A1HZ4 2.5.1.59 GO:0003824 ... P53610 38537632
    440352 8rdx:F (3.67) BS02 A1HZ4 2.5.1.59 GO:0003824 ... P53610 38537632
    440353 8rdx:H (3.67) BS02 A1HZ4 2.5.1.59 GO:0003824 ... P53610 38537632
    440354 8rdx:J (3.67) BS02 A1HZ4 2.5.1.59 GO:0003824 ... P53610 38537632
    440355 8rdx:L (3.67) BS02 A1HZ4 2.5.1.59 GO:0003824 ... P53610 38537632
    440356 8rdz:A (2.02) BS02 A1H14 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    440357 8rdz:A (2.02) BS04 A1H14 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    440358 8rdz:B (2.02) BS02 A1H14 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    440359 8rdz:B (2.02) BS04 A1H14 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    440360 8rdz:C (2.02) BS01 A1H14 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    440361 8rdz:C (2.02) BS03 A1H14 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    440362 8rdz:D (2.02) BS01 A1H14 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    440363 8rdz:D (2.02) BS02 A1H14 2.7.7.96
    3.6.1.13
    3.6.1.58    		 GO:0000287 ... Q9UKK9 38635563
    440364 8re0:A (1.56) BS04 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    440365 8re0:B (1.56) BS04 A1H0D 1.1.5.2 GO:0008876 ... P13650 38687614
    440366 8re2:A (2.2) BS01 HEM ? GO:0004601 ... Q9RZ08 38257271
    440367 8re3:A (1.51) BS01 HEM ? GO:0004601 ... Q9RZ08 38257271
    440368 8re3:B (1.51) BS01 HEM ? GO:0004601 ... Q9RZ08 38257271
    440369 8rev:A (3.1) BS03 SF4 3.6.4.12 GO:0003677 ... G0RZH0 38806694
    440370 8rev:A (3.1) BS04 ADP 3.6.4.12 GO:0003677 ... G0RZH0 38806694
    440371 8rf0:A (3.4) BS01 BGC N/A GO:0003824 ... N/A 38418509
    440372 8rf0:A (3.4) BS02 BGC N/A GO:0003824 ... N/A 38418509
    440373 8rf0:A (3.4) BS03 BGC N/A GO:0003824 ... N/A 38418509
    440374 8rf0:A (3.4) BS04 BGC N/A GO:0003824 ... N/A 38418509
    440375 8rf0:A (3.4) BS05 UPG N/A GO:0003824 ... N/A 38418509
    440376 8rf2:A (1.44) BS01 A1H0G N/A N/A P0DTD1 38841886
    440377 8rf3:A (1.23) BS01 A1H0L N/A N/A P0DTD1 38841886
    440378 8rf4:A (1.11) BS01 EQT N/A N/A P0DTD1 38841886
    440379 8rf5:A (1.1) BS01 FBB N/A N/A P0DTD1 38841886
    440380 8rf6:A (1.08) BS01 A1H0K N/A N/A P0DTD1 38841886
    440381 8rf8:A (1.12) BS01 A1H0M N/A N/A P0DTD1 38841886
    440382 8rfc:A (1.1) BS01 A1H0N N/A N/A P0DTD1 38841886
    440383 8rfd:A (1.13) BS01 A1H0J N/A N/A P0DTD1 38841886
    440384 8rfe:A (3.8) BS01 BGC N/A GO:0003824 ... N/A 38418509
    440385 8rfe:A (3.8) BS02 BGC N/A GO:0003824 ... N/A 38418509
    440386 8rfe:A (3.8) BS03 BGC N/A GO:0003824 ... N/A 38418509
    440387 8rfe:A (3.8) BS04 BGC N/A GO:0003824 ... N/A 38418509
    440388 8rfe:A (3.8) BS05 UPG N/A GO:0003824 ... N/A 38418509
    440389 8rfe:A (3.8) BS06 UPG N/A GO:0003824 ... N/A 38418509
    440390 8rff:A (1.31) BS01 ABV N/A N/A P0DTD1 38841886
    440391 8rfg:A (3.35) BS01 BGC N/A GO:0003824 ... N/A 38418509
    440392 8rfg:A (3.35) BS02 BGC N/A GO:0003824 ... N/A 38418509
    440393 8rfg:A (3.35) BS03 BGC N/A GO:0003824 ... N/A 38418509
    440394 8rfg:A (3.35) BS04 BGC N/A GO:0003824 ... N/A 38418509
    440395 8rfg:A (3.35) BS05 BGC N/A GO:0003824 ... N/A 38418509
    440396 8rfg:A (3.35) BS06 BGC N/A GO:0003824 ... N/A 38418509
    440397 8rfg:A (3.35) BS07 BGC N/A GO:0003824 ... N/A 38418509
    440398 8rfg:A (3.35) BS08 BGC N/A GO:0003824 ... N/A 38418509
    440399 8rfg:A (3.35) BS09 BGC N/A GO:0003824 ... N/A 38418509
    440400 8rfg:A (3.35) BS10 BGC N/A GO:0003824 ... N/A 38418509
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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