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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    439601 8qxt:G (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439602 8qxt:G (2.9) BS02 BEF N/A GO:0000287 ... P0A6F5 39169181
    439603 8qxt:H (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439604 8qxt:I (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439605 8qxt:J (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439606 8qxt:K (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439607 8qxt:L (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439608 8qxt:M (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439609 8qxt:N (2.9) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439610 8qxu:A (12.0) BS01 ATP N/A GO:0000287 ... P0A6F5 39169181
    439611 8qxu:B (12.0) BS01 ATP N/A GO:0000287 ... P0A6F5 39169181
    439612 8qxu:C (12.0) BS01 ATP N/A GO:0000287 ... P0A6F5 39169181
    439613 8qxu:D (12.0) BS01 ATP N/A GO:0000287 ... P0A6F5 39169181
    439614 8qxu:E (12.0) BS01 ATP N/A GO:0000287 ... P0A6F5 39169181
    439615 8qxu:F (12.0) BS01 ATP N/A GO:0000287 ... P0A6F5 39169181
    439616 8qxu:G (12.0) BS01 ATP N/A GO:0000287 ... P0A6F5 39169181
    439617 8qxu:H (12.0) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439618 8qxu:I (12.0) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439619 8qxu:J (12.0) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439620 8qxu:K (12.0) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439621 8qxu:L (12.0) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439622 8qxu:M (12.0) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439623 8qxu:N (12.0) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439624 8qxv:A (13.6) BS01 ATP N/A GO:0000287 ... P0A6F5 39169181
    439625 8qxv:B (13.6) BS01 ATP N/A GO:0000287 ... P0A6F5 39169181
    439626 8qxv:C (13.6) BS01 ATP N/A GO:0000287 ... P0A6F5 39169181
    439627 8qxv:D (13.6) BS01 ATP N/A GO:0000287 ... P0A6F5 39169181
    439628 8qxv:E (13.6) BS01 ATP N/A GO:0000287 ... P0A6F5 39169181
    439629 8qxv:F (13.6) BS01 ATP N/A GO:0000287 ... P0A6F5 39169181
    439630 8qxv:G (13.6) BS01 ATP N/A GO:0000287 ... P0A6F5 39169181
    439631 8qxv:H (13.6) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439632 8qxv:I (13.6) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439633 8qxv:J (13.6) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439634 8qxv:K (13.6) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439635 8qxv:L (13.6) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439636 8qxv:M (13.6) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439637 8qxv:N (13.6) BS01 ADP N/A GO:0000287 ... P0A6F5 39169181
    439638 8qxy:A (1.41) BS01 XYP N/A N/A P09850 39185686
    439639 8qxy:A (1.41) BS02 XYP N/A N/A P09850 39185686
    439640 8qxy:A (1.41) BS03 XYP N/A N/A P09850 39185686
    439641 8qxy:A (1.41) BS04 XYP N/A N/A P09850 39185686
    439642 8qxy:B (1.41) BS01 XYP N/A N/A P09850 39185686
    439643 8qxy:B (1.41) BS02 XYP N/A N/A P09850 39185686
    439644 8qxy:B (1.41) BS03 XYP N/A N/A P09850 39185686
    439645 8qxy:B (1.41) BS04 XYP N/A N/A P09850 39185686
    439646 8qxy:B (1.41) BS05 XYP N/A N/A P09850 39185686
    439647 8qxy:B (1.41) BS06 XYP N/A N/A P09850 39185686
    439648 8qy0:A (1.9) BS01 XYP N/A N/A P09850 39185686
    439649 8qy0:A (1.9) BS02 XYP N/A N/A P09850 39185686
    439650 8qy0:A (1.9) BS03 XYP N/A N/A P09850 39185686
    439651 8qy0:A (1.9) BS04 XYP N/A N/A P09850 39185686
    439652 8qy0:A (1.9) BS05 XYP N/A N/A P09850 39185686
    439653 8qy0:B (1.9) BS01 XYP N/A N/A P09850 39185686
    439654 8qy0:B (1.9) BS02 XYP N/A N/A P09850 39185686
    439655 8qy0:B (1.9) BS03 XYP N/A N/A P09850 39185686
    439656 8qy0:B (1.9) BS04 XYP N/A N/A P09850 39185686
    439657 8qy0:B (1.9) BS05 XYP N/A N/A P09850 39185686
    439658 8qy0:B (1.9) BS06 XYP N/A N/A P09850 39185686
    439659 8qy1:A (1.9) BS01 XYP N/A N/A P09850 39185686
    439660 8qy1:A (1.9) BS02 XYP N/A N/A P09850 39185686
    439661 8qy1:A (1.9) BS03 XYP N/A N/A P09850 39185686
    439662 8qy1:A (1.9) BS04 XYP N/A N/A P09850 39185686
    439663 8qy1:B (1.9) BS01 XYP N/A N/A P09850 39185686
    439664 8qy1:B (1.9) BS02 XYP N/A N/A P09850 39185686
    439665 8qy1:B (1.9) BS03 XYP N/A N/A P09850 39185686
    439666 8qy3:A (1.24) BS01 XYP N/A N/A P09850 39185686
    439667 8qy3:A (1.24) BS02 XYP N/A N/A P09850 39185686
    439668 8qyf:A (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    439669 8qyf:B (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    439670 8qyf:C (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    439671 8qyf:D (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    439672 8qyf:E (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    439673 8qyf:F (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    439674 8qyf:G (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    439675 8qyf:H (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    439676 8qyf:I (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    439677 8qyf:J (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    439678 8qyf:K (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    439679 8qyf:L (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    439680 8qyf:M (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    439681 8qyf:N (2.33) BS01 6V8 3.4.21.92 GO:0004176 ... Q5HQW0 38296985
    439682 8qyg:A (1.15) BS01 FMN ? GO:0000166 ... A0A6H0WK49 38946302
    439683 8qyg:A (1.15) BS02 FMN ? GO:0000166 ... A0A6H0WK49 38946302
    439684 8qyg:B (1.15) BS01 FMN ? GO:0000166 ... A0A6H0WK49 38946302
    439685 8qyg:B (1.15) BS02 FMN ? GO:0000166 ... A0A6H0WK49 38946302
    439686 8qyi:A (2.3) BS01 HEM N/A GO:0004497 ... Q59819 N/A
    439687 8qyi:A (2.3) BS02 4OA N/A GO:0004497 ... Q59819 N/A
    439688 8qyi:B (2.3) BS01 HEM N/A GO:0004497 ... Q59819 N/A
    439689 8qyi:B (2.3) BS02 4OA N/A GO:0004497 ... Q59819 N/A
    439690 8qyi:C (2.3) BS01 HEM N/A GO:0004497 ... Q59819 N/A
    439691 8qyi:C (2.3) BS02 4OA N/A GO:0004497 ... Q59819 N/A
    439692 8qyi:D (2.3) BS01 HEM N/A GO:0004497 ... Q59819 N/A
    439693 8qyi:D (2.3) BS02 4OA N/A GO:0004497 ... Q59819 N/A
    439694 8qyi:E (2.3) BS01 HEM N/A GO:0004497 ... Q59819 N/A
    439695 8qyi:E (2.3) BS02 4OA N/A GO:0004497 ... Q59819 N/A
    439696 8qyi:F (2.3) BS01 HEM N/A GO:0004497 ... Q59819 N/A
    439697 8qyi:F (2.3) BS02 4OA N/A GO:0004497 ... Q59819 N/A
    439698 8qyp:A (2.759) BS01 ADP ? GO:0003774 ... Q9BE39 38014327
    439699 8qyq:A (2.61) BS01 ADP ? GO:0003774 ... Q9BE39 38014327
    439700 8qyq:A (2.61) BS02 BEF ? GO:0003774 ... Q9BE39 38014327
    439701 8qyq:A (2.61) BS04 XB2 ? GO:0003774 ... Q9BE39 38014327
    439702 8qyq:B (2.61) BS01 ADP ? GO:0003774 ... Q9BE39 38014327
    439703 8qyq:B (2.61) BS02 BEF ? GO:0003774 ... Q9BE39 38014327
    439704 8qyq:B (2.61) BS03 XB2 ? GO:0003774 ... Q9BE39 38014327
    439705 8qyr:B (1.8) BS01 XB2 ? GO:0003774 ... Q9BE39 38014327
    439706 8qyr:B (1.8) BS03 ADP ? GO:0003774 ... Q9BE39 38014327
    439707 8qyr:B (1.8) BS04 BEF ? GO:0003774 ... Q9BE39 38014327
    439708 8qyt:A (1.69) BS01 FMN 1.4.3.5 GO:0004733 ... Q9NVS9 38284493
    439709 8qyt:A (1.69) BS02 PLP 1.4.3.5 GO:0004733 ... Q9NVS9 38284493
    439710 8qyu:A (1.96) BS01 ADP ? GO:0003774 ... Q9BE39 38014327
    439711 8qyu:A (1.96) BS03 2OW ? GO:0003774 ... Q9BE39 38014327
    439712 8qyu:B (1.96) BS01 ADP ? GO:0003774 ... Q9BE39 38014327
    439713 8qyu:B (1.96) BS03 2OW ? GO:0003774 ... Q9BE39 38014327
    439714 8qyw:A (2.746) BS01 PO4 1.4.3.5 GO:0004733 ... Q9NVS9 38284493
    439715 8qyw:A (2.746) BS02 FMN 1.4.3.5 GO:0004733 ... Q9NVS9 38284493
    439716 8qyw:A (2.746) BS03 PO4 1.4.3.5 GO:0004733 ... Q9NVS9 38284493
    439717 8qz4:A (3.2) BS01 Y01 ? N/A P57789 38755204
    439718 8qz4:A (3.2) BS02 Y01 ? N/A P57789 38755204
    439719 8qz4:A (3.2) BS03 Y01 ? N/A P57789 38755204
    439720 8qz4:B (3.2) BS01 Y01 ? N/A P57789 38755204
    439721 8qz4:B (3.2) BS02 Y01 ? N/A P57789 38755204
    439722 8qz4:B (3.2) BS03 Y01 ? N/A P57789 38755204
    439723 8qz8:B (3.13) BS03 G2P ? GO:0001172 ... A0A1Y9SHW4 38066000
    439724 8qzd:A (1.3) BS01 XDZ 3.1.3.76
    3.3.2.10    		 GO:0003824 ... P34913 38470246
    439725 8qze:A (1.87) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    439726 8qze:B (1.87) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    439727 8qzf:A (1.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    439728 8qzf:B (1.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    439729 8qzi:A (2.5) BS01 COA N/A GO:0005515 ... O33336 N/A
    439730 8qzi:B (2.5) BS01 COA N/A GO:0005515 ... O33336 N/A
    439731 8qzi:C (2.5) BS01 COA N/A GO:0005515 ... O33336 N/A
    439732 8qzi:D (2.5) BS01 COA N/A GO:0005515 ... O33336 N/A
    439733 8qzi:E (2.5) BS01 COA N/A N/A P96202 N/A
    439734 8qzj:A (2.0) BS01 A3P N/A GO:0005515 ... O33336 N/A
    439735 8qzj:B (2.0) BS01 A3P N/A GO:0005515 ... O33336 N/A
    439736 8qzj:C (2.0) BS01 A3P N/A GO:0005515 ... O33336 N/A
    439737 8qzj:D (2.0) BS01 A3P N/A GO:0005515 ... O33336 N/A
    439738 8qzw:A (1.68) BS01 NAD N/A GO:0005737 ... F1AQF9 38923395
    439739 8qzx:A (3.01) BS01 NAD N/A GO:0005737 ... F1AQF9 38923395
    439740 8qzx:A (3.01) BS02 NAD N/A GO:0005737 ... F1AQF9 38923395
    439741 8qzx:B (3.01) BS01 NAD N/A GO:0005737 ... F1AQF9 38923395
    439742 8qzx:B (3.01) BS02 NAD N/A GO:0005737 ... F1AQF9 38923395
    439743 8qzx:C (3.01) BS01 NAD N/A GO:0005737 ... F1AQF9 38923395
    439744 8qzx:C (3.01) BS02 NAD N/A GO:0005737 ... F1AQF9 38923395
    439745 8qzx:D (3.01) BS01 NAD N/A GO:0005737 ... F1AQF9 38923395
    439746 8qzx:D (3.01) BS02 NAD N/A GO:0005737 ... F1AQF9 38923395
    439747 8qzz:A (3.35) BS02 GNP 3.6.5.3 GO:0000049 ... P41091 38547060
    439748 8r02:B (2.5) BS01 XFZ ? GO:0005515 ... Q9UBQ0 38487369
    439749 8r02:D (2.5) BS01 XFZ ? GO:0015031 ... Q96QK1 38487369
    439750 8r03:A (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    439751 8r03:B (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    439752 8r03:C (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    439753 8r03:D (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    439754 8r03:E (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    439755 8r03:F (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    439756 8r03:G (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    439757 8r03:H (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    439758 8r03:I (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    439759 8r03:J (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    439760 8r03:K (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    439761 8r03:L (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    439762 8r03:M (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    439763 8r03:N (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    439764 8r04:A (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    439765 8r04:B (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    439766 8r04:C (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    439767 8r04:D (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    439768 8r04:E (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    439769 8r04:F (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    439770 8r04:G (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    439771 8r04:H (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    439772 8r04:I (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    439773 8r04:J (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    439774 8r04:K (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    439775 8r04:L (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    439776 8r04:M (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    439777 8r04:N (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    439778 8r05:A (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    439779 8r05:B (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    439780 8r05:C (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    439781 8r05:D (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    439782 8r05:E (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    439783 8r05:F (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    439784 8r05:G (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    439785 8r05:H (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    439786 8r05:I (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    439787 8r05:J (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    439788 8r05:K (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    439789 8r05:L (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    439790 8r05:M (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    439791 8r05:N (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    439792 8r06:A (1.7) BS01 PO8 3.2.1.45 GO:0004348 ... F6BL85 28937220
    439793 8r0i:A (1.51) BS01 XG7 2.3.1.179 GO:0004315 ... G3XDA2 38665834
    439794 8r0i:B (1.51) BS01 XG7 2.3.1.179 GO:0004315 ... G3XDA2 38665834
    439795 8r0j:C (2.4) BS01 XFZ ? GO:0015031 ... Q96QK1 38487369
    439796 8r0v:A (2.48) BS01 O6K 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    439797 8r0v:B (2.48) BS01 O6K 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    439798 8r0v:C (2.48) BS01 O6K 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    439799 8r0v:D (2.48) BS01 O6K 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    439800 8r0z:A (1.2) BS02 XJF N/A N/A P31947 39172504
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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